Cla97C02G031860 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G031860
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	protein RADIALIS-like 3
Location	Cla97Chr02: 4820664 .. 4822479 (+)
RNA-Seq Expression	Cla97C02G031860
Synteny	Cla97C02G031860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGTTAGTGAAGATGATGAAAAATAGGAAACAATTATTGGATAATAACTCAAAGTTTATAAGTACTTTAATAACTATTAAATACAATACAAAAGTGTGTTTTTGTAAATTCTCTTTAAACTACACTATGGGAGTCTCTTTCAATAATTTTTCTACATTGGCTTCTTATATTACTATTACTTTTCTTCTTTTTTTCTTTTTTCAATTGGAAATCTTATCTTAAATTTTTCTAGTGATATTTTTTTATGCATATTTTTTAGGGTTCTTTTTAAATATAGCAAAAGGAACCAAAATATTTATAAATATAGCAAAATTTCACTATCTATTTGTGATAGACCGCGATAGATTGCGATAGATGATGTATTTTGCTATTAGTTGTAATATTTTCAACAGTTTTGTCATTTAAGATAATTTTTCTATTTTTTAAGATTATTAATTTTTTACCCCAATTATAATTTTCGTTTAGTTCAGCTTGTTGAAGGAAGAGATTCAAACTTCTCTCTTGGTTAAAAATATATATTCTTATCAATTGAGTACTCTATTCTAATTTTTGGCTTCCATGATATTAATTTCTAAAATCTATCTCAACATATAGCTTTTAGAAAAGGATTAAGAATATTTCAAACTATTGTAGCTGATGATGAGTATTATATATATATATATATATTGGCACTATTTCCTTTTTATCAAGTTGAATATTCTTTAGTTTTGGATTTGGAGATTTTTGTGTTCCAGGTTTAGGTGATTTCTATGTGCTTAGTTTTGTGATTAGGTTTAGATTTTCTATATGGTTGGTGAATATTTGTGACACTTTGAATATTTTGTTGGTTGAGTTTATTATAATTTATTGGCTAGTTTGGTGGCTACAATCTAATTATGGTTTTCAATATGTAATAATTATATATATATATATATATATTTAAAAATATTTACAAGGCAAGAGAGATCAGTAGGTAGATTGAAACCCTTTAACACCCTAATCACACCCCAGGACCAAAAAATGCATTGATATAATAGTTGAGTACAAAAGCGAGCTAGAGAGACATTCGACAGGGAGGAATACAATTATAGAAAGGCCTCTCAATTTAAAGCAATATCTAGGAATTATATTTAAGTCTAAGATTTAATGAGATAGAAATTAAAGTTTTAGGTAAAATTGATTCAAGAATTCAAGTGTGAAACCAACCCAATGACTCTTTTTCCTACAATTTTTAATCCAAAAAATTAAACATTTTAACTTGAATAAGTCTAAAATTATTAATATAAAAAAGATCTTCTATTTCAATATGGGATCTCCTACATTGATGGGTGATTTAACCGTCACTTTTTTTTTTTTTCTCTCTTTTTCTCTTTTAAGTTGTAGGGTTAATTTTAATGAAATTTCATTTGACTTTGCTGAGTTAAATATCATTATCGAAAATGAATAATTTTTTTTCAACAGTGAAATTTTGTTGAATTAGCTAAAATTGGGGTTGTTGAATTATTTTGTTTTGATGTGTTCTTCACTTAACATTTGCTTTTTTGGTAGGCTGCTGAAGTATCTTAAGCTTCAATGA

mRNA sequence

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA

Coding sequence (CDS)

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGCTGCTGAAGTATCTTAAGCTTCAATGA

Protein sequence

MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ

Homology

[Close]

BLAST of Cla97C02G031860 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIAMAVG KS DEVKRHYEVL
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 89/96 (92.71%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIAMAVG KSADEVKRHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. NCBI nr
Match: XP_008447023.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 9.0e-41
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. NCBI nr
Match: XP_004151090.1 (protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 3.4e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIAMAVG KSADEVKRHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-24
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY++L
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y       +  G  D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
           MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VG K+ +EVKRHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR  GG   G   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-22
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S+       +WT K+NKLFE+ALA YD++TP+RW N+A AVG KSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGN 83
          + D+  IESGR P PNYR  GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+          D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-21
Identity = 45/83 (54.22%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPI 74
          W+AK+NK FE+ALA+YDK+TP+RW N+A AV  ++ +EVK+HYE+L+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR-GGGNRDEELRLLKYLKLQ 97
          PNYR  GGN   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.4e-41
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDLRRIESGRVPIPNYR   NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIAMAVG KSADEVKRHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDL+RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 88/96 (91.67%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIAMAVG KSADEVKRHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 97
          LEDL RIESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-39
Identity = 87/100 (87.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
           MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWQNIA AVG KSADEVKRHY++L
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ 97
           LEDLRRIESGRVPIPNYR      GN DEELRLLKYLKL+
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of Cla97C02G031860 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-25
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY++L
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNY-------RGGGNRDEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y       +  G  D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cla97C02G031860 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
           MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VG K+ +EVKRHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYR--GG---GNRDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR  GG   G   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Cla97C02G031860 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-23
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR-----GGGNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+          D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cla97C02G031860 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-22
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Cla97C02G031860 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA AVG KS +EVKRHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          L D+  IESGR P P YR
Sbjct: 61 LRDVNDIESGRYPQPRYR 74

The following BLAST results are available for this feature:

BLAST of Cla97C02G031860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888995.1	5.1e-44	96.88	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]
XP_023554816.1	2.4e-41	92.71	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_008447023.1	9.0e-41	90.63	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
XP_004151090.1	2.6e-40	90.63	protein RADIALIS-like 3 [Cucumis sativus]	[more]
XP_022975322.1	3.4e-40	90.63	protein RADIALIS-like 3 [Cucurbita maxima]	[more]

BLAST of Cla97C02G031860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	3.6e-24	53.40	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.1e-22	53.47	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	2.6e-22	59.76	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	1.3e-21	52.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q58FS3	2.8e-21	54.22	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Cla97C02G031860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHB0	4.4e-41	90.63	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A0A0K2A2	1.3e-40	90.63	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A6J1ICR6	1.7e-40	90.63	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A6J1GKW1	1.7e-40	91.67	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1C2H2	3.1e-39	87.00	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]

BLAST of Cla97C02G031860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	2.5e-25	53.40	RAD-like 5	[more]
AT4G39250.1	8.2e-24	53.47	RAD-like 1	[more]
AT1G75250.2	9.0e-23	52.00	RAD-like 6	[more]
AT1G75250.1	2.0e-22	60.26	RAD-like 6	[more]
AT2G18328.1	4.2e-20	60.26	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 6.6E-7 score: 38.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.306941
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 4.27934E-5 score: 35.629
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 7.3E-22 score: 78.9
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G031860.1	Cla97C02G031860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding