Cla97C02G026210 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G026210
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosome hibernation promotion factor
Location	Cla97Chr02: 11661 .. 15848 (+)
RNA-Seq Expression	Cla97C02G026210
Synteny	Cla97C02G026210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGGTATTTCATTTAGCTTCATCTTTGCTATTGTTTCTCATGCAATGCGACTTCTTCTTTTCACTATCTTGAATTGTTAATTCTTCCCATGTTTGATTCAGTAATTACTATCAAATGAATCCACATAACCTCTAACTTTTTCATACCCCATTCTCTATGCTATTTCAATCACCATATCCCTTTACTCAAACCCTACCCTTGTATTTGCTGACTTCTCCATTTCCACTACATTTAGTTTACAAACCCTAAACTCTGCCTCATTTCTTTAAATATTTTCCGTATCAACATTCGTGGCCCTTCTCCATTCTTCTTTTTACTCTGCACACCTCTTTGAAGTGAACGCATCGCATAAGGAATTCACTATCATTTTCAAAAACTCCTCCCTCCATCTCCTAATCTCTCAGCGAATTTTGATATTGATATTCTATATCTTCGCTTATTGCAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGTGCATTCACTCTCTTCAATATCAGCATCTAAACCAAATTTATTCTTCTCTACATTCTCATCAAACACAACCATTTTTCCTTCATAATCATTCCATTCCAGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACGCATCAAAAGCAGTCAACACATGTAATAAAAGACTGCTGCCTCGTTATGGAAATATTAGAGTTATTAGTATGGTTATTAGAAGGGCATATTAGTAATTAGTTAGTAAGTTTGTTAGAGCTTTTAGTTATAAATAGAGAGAGTTGGTTGGGAGCAAGGTGTGGATCATTTTGGTAGTAATTTCCTTTGTGGGAATTTAAGTGGGTGTAACCCTCTCGAAAGGAAAGGCTATGATATTGTAGTTTCTTCATTCATCTTGCAATATAATTCTATCTTTTTGTGTTTGTTGTTCTTCAATGTTCATGCTAGCTGATAACCCAACTACACCCTAATCTAGATGATACGGATTTGACACCAAATATTAGGAATAAGCTCTTCAAAGAAATAAAAGCAGGAGAAATATACTGTTAAAAACATGCTGGAAATGATAACAAAGTTTAATAAGGTGGTCATCATACTGAACTTACCTACTAGATGCAGATAAAGAAATTACCTACTAACACTTATAAACAAGCTACCTTAGTTGTAGAAACTCTGCTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAACATGTACTTCTAGAAGTTGTCCGAGTTTCAGTTACCCAATTTATGGTATCTCAATGTTTCAAATGTCAAACATTGAGTGGATTGAGGGTTTTGACTTTAGTTTGGGAGAAGGGATGTTCGTGTTTGGAGTCCTAACCCATTGGAGGGTTTCTCTTGTACGTCGTTCTTTAGGATTTTATTAGATCCTTCTCTTGTTGTTGAGTCGGTCTTTGATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCCTAGCAAGTTTTGCTTGGTCGTGTGAATACGATGGATACGATTTTGAGAAAGATGTCTTCGTTAATGGGTCTATTTTGTTGTATTTTTTGTCGGAAGATGGAGGAAACCTAGATCACCTTCTTGGAGTGTCAGTTTGCGAGATCTGTTTGGAACGGTTTCTTGCAAGAGTTTGATTTTAATCTTGCTCACCGGTTGATAATTGGGGAGTTCCTTCTCCATCCGTCTTTCAAAGAGAAAGGTCATTTTCTTTGATTTGTGGGGGTGTGTGTTTTGTGGGATCTTTGGGAGGAGAGAAACAATAGAGTGTTTCGGGTTGTGGAGGGACCCTAGCAAGGTTTGGTCTTTATTGAGGTTTCATGTTTCTCTTTGGGCTTCGGTTTTGAAGGCTTTTTGTTATCACTCTCTAGTCAATATCTTACCTAGATGGAAACACTTTCTTTAGTTGGAGATTTTTTTTTGTGTGAGTTTTCTTTTTTTGTATGCCCTTGCATTCTTTCCTTTTTTTTCCTCAATGAAATAGTTGTTTCTGTATTTTTTTTAAAAAAATACAATAATACAAAAAGAAAAAAATACAAAAATAAAAATAAAATAAAATAAAGAAAAAACATTGAGTTGATTTATGTTTAATTGTGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTACTCTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAACCCTCATTCGTTTCCAAAAACATTTGTGTTTATATAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCTTCCAACCTTTGGGTTTTTACTTTGAGTTCATTTAAGGTGATATTAGCTTATAAAAGCTCATGTATGCCATGCCTTATGCCATGCCTGTTAATTATTTTCTACATGTCGAAGCTTATTATGAAACTTACTAAACCACATCTTTCCTCACTTAGTTATTGAAAACATTGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATCAATTAGTAGTGGGAAAACTCCAGATGCAGTACTCAGATTAGTTGAACCATGTGCAATAAGTTACTCCTCGCATAGGTGGGAAGAACGGAAAGAAATGCATTCTCAATCTTGATTACCCCCCTCTGATGTGCTATTCTCAACTGAGTTCAGCTCAAAGTCCTATTTTTATTTACATTATAGGATTAATAAGTCAGTTCTTTTATTTCACAACATGACATCTTAGATAAACATGAAAAAATCGGAAGTTGGACCTGACAACTGTAAGATAGAGGGCCTCCATAGTTTGTAGGAGTCTGTTATCTGTTATTTCTCACAGAGCTAACATTGTGTTGACTGTTATTTTATTGATCCTTTGCTCCTCATGAGTGTTTTGTGGTCCATTCCAATGTACTTGATCGTTATAGCTTTTGATTTACTTGCTGCTTATTTTGTTTACATTCAATTTTGGTTGGAAGGACTTATGATATTCGTCCTTTTTAGATAACGATCATGTATTATACATATTCTGGAAGCTCGTGAATGATATGTACACATGATTAAAATATTAATTTTTCCTTTTCATGCTAGCAATTTTTTATTTTGGTATCTCATTGCTCATTTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTATGATGATCTTGCTTTGTTGGGATTCTTTGCTGTTTATATCGTAGCTTATTGTCTGAATCTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

mRNA sequence

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Coding sequence (CDS)

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Protein sequence

MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE

Homology

[Close]

BLAST of Cla97C02G026210 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 535.0 bits (1377), Expect = 4.3e-148
Identity = 285/318 (89.62%), Postives = 297/318 (93.40%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL        S    SSS++S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSL--------SPPFHSSSTVSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVT+EA REPSLAE
Sbjct: 301 EKLEPVTIEATREPSLAE 310

[Close]

BLAST of Cla97C02G026210 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa])

HSP 1 Score: 534.3 bits (1375), Expect = 7.4e-148
Identity = 285/318 (89.62%), Postives = 296/318 (93.08%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSL--------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVTVEAAREPSLAE
Sbjct: 301 EKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Cla97C02G026210 vs. NCBI nr
Match: XP_038900446.1 (ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 519.2 bits (1336), Expect = 2.5e-143
Identity = 285/320 (89.06%), Postives = 293/320 (91.56%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHAL--SSN 62
           MA LTSSM  +LL  HSL       SSSSSSSSS+ISFFPASFSLHFSALKVHAL  SS 
Sbjct: 1   MAALTSSMHTSLLPDHSL-------SSSSSSSSSTISFFPASFSLHFSALKVHALSCSST 60

Query: 63  TSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVE 122
            SAFFNSCKSF T ET SR+RHASNSFNVRMSWDG LSSVKLIVQ KNLELTEAVKKHVE
Sbjct: 61  ASAFFNSCKSFRTFETASRNRHASNSFNVRMSWDGPLSSVKLIVQAKNLELTEAVKKHVE 120

Query: 123 EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA 182
           EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA
Sbjct: 121 EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA 180

Query: 183 SIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVID 242
           SIDLVSSIIQRKLRKIKEKDSD GRHMKGFDR KVREPAPIVV DEDEEVF+ED GEVID
Sbjct: 181 SIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEDEEVFEED-GEVID 240

Query: 243 EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG 302
           EIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG
Sbjct: 241 EIVRRKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG 300

Query: 303 KAEKLEPVTVEAAREPSLAE 321
           +AEKLE VT++AAREPSLAE
Sbjct: 301 RAEKLESVTIDAAREPSLAE 312

[Close]

BLAST of Cla97C02G026210 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 493.4 bits (1269), Expect = 1.4e-135
Identity = 273/323 (84.52%), Postives = 288/323 (89.16%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALS 62
           MA LTSSMQ NLLS HSL  + SSSSSSSSSSSS++S FP SFSL    + + LK HALS
Sbjct: 1   MAALTSSMQTNLLSAHSL--TPSSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALS 60

Query: 63  SNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKK 122
           S+ SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLELTEAVKK
Sbjct: 61  SHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKK 120

Query: 123 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 182
           HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 121 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 180

Query: 183 VYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGE 242
           VYASIDLVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+R+PAPIVV DE+EEV QEDGGE
Sbjct: 181 VYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGE 240

Query: 243 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 302
            IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Sbjct: 241 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300

Query: 303 ENGKAEKLEPVTVEAAREPSLAE 321
           E+G AEK+E VTVE ARE SLAE
Sbjct: 301 EDGNAEKIETVTVEVAREASLAE 321

[Close]

BLAST of Cla97C02G026210 vs. NCBI nr
Match: KAG6576623.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 490.0 bits (1260), Expect = 1.6e-134
Identity = 272/323 (84.21%), Postives = 286/323 (88.54%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASF----SLHFSALKVHALS 62
           MA LTSSMQ NLLS HSL  + SSSSSSSSSSSS++S FP SF    S + + LK HALS
Sbjct: 1   MAALTSSMQTNLLSTHSL--TPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALS 60

Query: 63  SNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKK 122
           S+ SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLELTEAVKK
Sbjct: 61  SHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKK 120

Query: 123 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 182
           HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 121 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 180

Query: 183 VYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGE 242
           VYASIDLVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVV DE+EEV QEDGGE
Sbjct: 181 VYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGE 240

Query: 243 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 302
            IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Sbjct: 241 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300

Query: 303 ENGKAEKLEPVTVEAAREPSLAE 321
           E+G AEK+E VTV  ARE SLAE
Sbjct: 301 EDGNAEKIETVTVGVAREASLAE 321

[Close]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 323.6 bits (828), Expect = 2.6e-87
Identity = 192/330 (58.18%), Postives = 241/330 (73.03%), Query Frame = 0


Query: 3   MATL-TSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNT 62
           MATL TS++  N    +SLS+S + SS+ ++                        LSS  
Sbjct: 1   MATLCTSAINMNPNLTNSLSNSINLSSTPTN------------------------LSSLR 60

Query: 63  SAFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKH 122
           S F NSC S G    +++   SR+  N   V MSWDG LSSVKLI+QG+NLE+++ V+ H
Sbjct: 61  STFTNSC-SLGLNVAVKSVQISRNKPNV--VCMSWDGPLSSVKLILQGRNLEVSDNVRSH 120

Query: 123 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 182
           VE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++
Sbjct: 121 VEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESL 180

Query: 183 YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDED--EEV------ 242
           Y+SIDLVSSIIQRKLRKIK+K SDHGRHMKGF+R KVR+P P+ +  E+  EEV      
Sbjct: 181 YSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAP 240

Query: 243 FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGG 302
              +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GG
Sbjct: 241 VSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGG 300

Query: 303 YGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           YGLIIPK+ GK EKLE + V+  ++PS AE
Sbjct: 301 YGLIIPKD-GKTEKLESLPVQTDKQPSFAE 302

[Close]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-34
Identity = 86/204 (42.16%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 159
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 160 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--DSDHGRHMKGFDRLK 219
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG         +
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG----NVKTSE 120

Query: 220 VREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 279
           + E  P+     +E +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 280 EETGEINILYKRKDGGYGLIIPKE 299
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 9.1e-32
Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 159
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 160 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHM-KGFDRLKVREP 219
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+     H+ +    +   +P
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDP 120

Query: 220 APIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 279
            P       + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 VP-------DNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 280 EINILYKRKDGGYGLIIPK 298
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

[Close]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-20
Identity = 70/199 (35.18%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 104 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 163
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 164 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVR-EPAPIV 223
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK   R + R EP P  
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLP-- 125

Query: 224 VGDEDEEVFQEDGGEVID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNE 283
            G  + EV  +  G  +D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ 
Sbjct: 126 -GPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDL 185

Query: 284 ETGEINILYKRKDGGYGLI 295
           + G+  ++Y+R+DG YGLI
Sbjct: 186 Q-GQTGVVYRRRDGHYGLI 188

[Close]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot
Match: Q4L4H7 (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=hpf PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-19
Identity = 69/199 (34.67%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 159
           ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQ----NSTTKIEV 61

Query: 160 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKDSDHGRHMKGFDRLKV 219
           T+   K+  +RAEE  + +YA IDLV+S ++R++RK K     K   HG   + F   +V
Sbjct: 62  TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHG-EPEAF-VAEV 121

Query: 220 REPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNE 279
           +E  P  V D + E    +  E+  EI+R+K F + P+  EEA+ Q++ + HDFY F + 
Sbjct: 122 QEAPPENVDDVNAE--PTNDSEI--EIIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTDR 181

Query: 280 ETGEINILYKRKDGGYGLI 295
           ET   +I+YKRKDG YGLI
Sbjct: 182 ETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.6e-148
Identity = 285/318 (89.62%), Postives = 296/318 (93.08%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSL--------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVTVEAAREPSLAE
Sbjct: 301 EKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.6e-148
Identity = 285/318 (89.62%), Postives = 296/318 (93.08%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSL--------PPPHPSSSTVSYFPAPFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVTVEAAREPSLAE
Sbjct: 301 EKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 1.0e-134
Identity = 270/323 (83.59%), Postives = 284/323 (87.93%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALS 62
           MA LTSSMQ NLLS HSL      + SSSSSSSS++S FP SFSL    + + LK HALS
Sbjct: 1   MAALTSSMQTNLLSAHSL------TPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALS 60

Query: 63  SNTSAFFNSCK-SFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKK 122
           S+ SAFFNSC   F TI    R RHA+ SF++RMSWDG LSSVKLIVQGKNLELTEAVKK
Sbjct: 61  SHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKK 120

Query: 123 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 182
           HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 121 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 180

Query: 183 VYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGE 242
           VYASIDLVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVV DE+EEV QEDGGE
Sbjct: 181 VYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGE 240

Query: 243 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 302
            IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Sbjct: 241 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300

Query: 303 ENGKAEKLEPVTVEAAREPSLAE 321
           E+G AEK+E VTVE ARE SLAE
Sbjct: 301 EDGNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.3e-134
Identity = 270/324 (83.33%), Postives = 281/324 (86.73%), Query Frame = 0


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSL----HFSALKVHALS 62
           MATLTSSM  NLL              S+ SSSS+ S FPASFSL    + SALK+H LS
Sbjct: 1   MATLTSSMHTNLL--------------SAPSSSSTFSTFPASFSLLTSTNSSALKIHPLS 60

Query: 63  SNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKH 122
           S+TS FFNSC  F TI+   R+RHA+NSF +RMSWDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SHTSPFFNSCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 123 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 182
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETV 180

Query: 183 YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGD--EDEEVFQEDGG 242
           YASIDLVSSIIQRKLRKIKEKDSD GRHMKGFDRLKVREPAPIVV D  E+EEV  ED G
Sbjct: 181 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSG 240

Query: 243 EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 302
           EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP
Sbjct: 241 EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 300

Query: 303 KENGKAEKLEPVTVEAAREPSLAE 321
           KENG+AEKLEPVTVE AREPSLAE
Sbjct: 301 KENGRAEKLEPVTVEPAREPSLAE 310

[Close]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.6e-132
Identity = 259/300 (86.33%), Postives = 272/300 (90.67%), Query Frame = 0


Query: 26  SSSSSSSSSSSSISFFPASFSL----HFSALKVHALSSNTSAFFNSCK-SFGTIETPSRS 85
           SSSSSSSSSSS++S FP SFSL    + + LK+HALSS+ SAFFNSC   F TI    R 
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 86  RHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 145
           RHA+ SF++RMSWDG LSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 143

Query: 146 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD 205
           LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKD
Sbjct: 144 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 203

Query: 206 SDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIE 265
           SDHGRHMKGFDR K+REPAPIVV DE+EEV QEDGGE IDEIVRTKYFDMPPLTVEEAIE
Sbjct: 204 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 263

Query: 266 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG AEK+E VTVE ARE SLAE
Sbjct: 264 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Cla97C02G026210 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 357.8 bits (917), Expect = 8.8e-99
Identity = 184/248 (74.19%), Postives = 211/248 (85.08%), Query Frame = 0


Query: 79  RSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 138
           R  +  +S  V+MSWDG L+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 139 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 198
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 199 KDSDHGRHMKGFDRLKVREPA--PIVVGDEDEEVF----QEDGGEVIDEIVRTKYFDMPP 258
           KDSDHGRHMKGF+RLKVREP   P+V   ED        +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 259 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEA 318
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++GKAEK+EP+  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 319 AREPSLAE 321
             E S AE
Sbjct: 301 LNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Cla97C02G026210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147328.1	4.3e-148	89.62	ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp...	[more]
XP_008460813.1	7.4e-148	89.62	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023...	[more]
XP_038900446.1	2.5e-143	89.06	ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]	[more]
KAG7014676.1	1.4e-135	84.52	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG6576623.1	1.6e-134	84.21	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of Cla97C02G026210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	2.6e-87	58.18	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	1.1e-34	42.16	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	9.1e-32	39.70	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	2.1e-20	35.18	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q4L4H7	1.4e-19	34.67	Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS...	[more]

BLAST of Cla97C02G026210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQR1	3.6e-148	89.62	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	3.6e-148	89.62	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1E3S3	1.0e-134	83.59	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CJG5	1.3e-134	83.33	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1J523	3.6e-132	86.33	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Cla97C02G026210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	8.8e-99	74.19	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 103..199 e-value: 1.6E-22 score: 80.1
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 101..204 e-value: 6.3E-19 score: 66.3
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 101..199 e-value: 2.69047E-24 score: 92.5781
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 240..293 e-value: 4.7E-26 score: 90.2
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 101..204 e-value: 5.3E-22 score: 79.9
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 101..206
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 252..304 e-value: 2.0E-21 score: 77.2
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 85..300
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 85..300
IPR034694	Ribosome hibernation promoting factor, long/plastid	HAMAP	MF_00839	HPF	coord: 100..297 score: 20.27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G026210.1	Cla97C02G026210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0043024	ribosomal small subunit binding
molecular_function	GO:0043022	ribosome binding