Cla97C01G018755 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G018755
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
LocationCla97Chr01: 31920565 .. 31921313 (-)
RNA-Seq ExpressionCla97C01G018755
SyntenyCla97C01G018755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTGGTGGACTCACGTGGAGTCGAAAAGGAAGTGATGTAGGAGAGTGTGACTCTGGTAATACGGAAATATTCGGGAAAATTTTGGACGTTTTCGTGGGGAAGTCCGTACGGTGGGTCCCACGTAATCGCCGAATGGGAGACACGACTTGTCGTTCGCTCAAAATCATTTTAGTGATCGTAAATATAAACGTGACAATATGTTTATATTTTTCTATTTTGAATTAGTTTATAATTGTCTATCTTTGCTCTTAGGGGAATGGGATAGCAGTGCAATGAATTGAATCAAGAGTCAACCACCACTTGTAATTGAATCAGTAAGCGCAGGTATTCAAGATAGAGGGAACTAACTTTGAGATTCTAGAAATTCTTTTATTTAAAATTGAATTGCATTTTTTTATTTATTTAAATAATATACATAAATTTACACCATATAAAAGATCTTTTAGAAGCACATATTCTGTCCGGAGACGATTGGAATGCGACATAAAGGTCTTTGTGACACAATCAATAATTTGCTTTATTTTCAGTTAGGTCTTGCTTTAGCCTCTTTAGGAGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTATTCAAGCTGCGTTATATACCCATAACCAATACATGAAATGGCACTTGGATCAGAGGCTGAGGAAATATGTAATTTCTGTTAGAAAACGAAAAGTCAGAAGAGGTATTGAATGTTGA

mRNA sequence

ATGGTGATTGGTGGACTCACGTGGAGTCGAAAAGGAAGTGATGTAGGAGAGTGTGACTCTGGTAATACGGAAATATTCGGGAAAATTTTGGACGTTTTCGTGGGGAAGTCCTTAGGTCTTGCTTTAGCCTCTTTAGGAGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTATTCAAGCTGCGTTATATACCCATAACCAATACATGAAATGGCACTTGGATCAGAGGCTGAGGAAATATGTAATTTCTGTTAGAAAACGAAAAGTCAGAAGAGGTATTGAATGTTGA

Coding sequence (CDS)

ATGGTGATTGGTGGACTCACGTGGAGTCGAAAAGGAAGTGATGTAGGAGAGTGTGACTCTGGTAATACGGAAATATTCGGGAAAATTTTGGACGTTTTCGTGGGGAAGTCCTTAGGTCTTGCTTTAGCCTCTTTAGGAGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGACTTTACTATTCAAGCTGCGTTATATACCCATAACCAATACATGAAATGGCACTTGGATCAGAGGCTGAGGAAATATGTAATTTCTGTTAGAAAACGAAAAGTCAGAAGAGGTATTGAATGTTGA

Protein sequence

MVIGGLTWSRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYMKWHLDQRLRKYVISVRKRKVRRGIEC
Homology
[Close]
BLAST of Cla97C01G018755 vs. NCBI nr
Match: QTJ25520.1 (PsaB [Impatiens chlorosepala] >QUV73935.1 PsaB [Impatiens monticola])

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-13
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 313 GRLGRGHTGLYDTI-NNSINFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 372

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 373 YTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. NCBI nr
Match: KAF8042378.1 (hypothetical protein BT93_A0873 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-13
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QYM
Sbjct: 145 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYM 189

[Close]
BLAST of Cla97C01G018755 vs. NCBI nr
Match: DAD49723.1 (TPA_asm: hypothetical protein HUJ06_000153 [Nelumbo nucifera])

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-13
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0 

Query: 7   TWSRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIA 66
           T+S  G  +G    G  +     +       LGLALASLGVITSLVAQHMYSLPAYAFIA
Sbjct: 295 TYSSSGGRLGRGHKGLYDTINNSIHF----QLGLALASLGVITSLVAQHMYSLPAYAFIA 354

Query: 67  QDFTIQAALYTHNQYM 83
           QDFT QAALYTH+QY+
Sbjct: 355 QDFTTQAALYTHHQYI 366

[Close]
BLAST of Cla97C01G018755 vs. NCBI nr
Match: YP_009828929.1 (PsaB [Impatiens hawkeri] >QJC59237.1 PsaB [Impatiens hawkeri])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 313 GRLGRGHTGLYDTI-NNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 372

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 373 YTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. NCBI nr
Match: QTJ26054.1 (PsaB [Impatiens walleriana])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 313 GRLGRGHTGLYDTI-NNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 372

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 373 YTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match: A4QJB4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=434059 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match: A4QJJ8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=72657 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match: A4QK17 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Arabis hirsuta OX=78191 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match: A0A411L685 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Corbichonia decumbens OX=115631 GN=psaB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-13
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 313 GRLGRGHTGLYDTI-NNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 372

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 373 YTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match: A0A6M3QGU6 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Impatiens hawkeri OX=127127 GN=psaB PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-13
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 313 GRLGRGHTGLYDTI-NNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 372

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 373 YTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match: B2LBF7 (Photosystem I (Fragment) OS=Cleistes uliginosa OX=511786 GN=psaB PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.4e-13
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 16  GECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAAL 75
           G    G+T ++  I +  +   LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAAL
Sbjct: 283 GRLGRGHTGLYDSI-NNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAAL 342

Query: 76  YTHNQYM 83
           YTH+QY+
Sbjct: 343 YTHHQYI 348

[Close]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match: A0A0A6Z868 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Macrozamia mountperriensis OX=707766 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match: A0A1P8J737 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Juglans mandshurica OX=91218 GN=psaB PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 38  LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTIQAALYTHNQYM 83
           LGLALASLGVITSLVAQHMYSLPAYAFIAQDFT QAALYTH+QY+
Sbjct: 334 LGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYI 378

[Close]
BLAST of Cla97C01G018755 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0 

Query: 9   SRKGSDVGECDSGNTEIFGKILDVFVGKSLGLALASLGVITSLVAQHMYSLPAYAFIAQD 68
           + KG   G+   G  E    IL       L L LA LG +T +VA HMYS+P Y ++A D
Sbjct: 325 AHKGPFTGQGHKGLYE----ILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATD 384

Query: 69  FTIQAALYTHNQYM 83
           +  Q +L+TH+ ++
Sbjct: 385 YATQLSLFTHHMWI 394

The following BLAST results are available for this feature:
BLAST of Cla97C01G018755 vs. NCBI nr
Match NameE-valueIdentityDescription
QTJ25520.16.8e-1368.66PsaB [Impatiens chlorosepala] >QUV73935.1 PsaB [Impatiens monticola][more]
KAF8042378.18.9e-1395.56hypothetical protein BT93_A0873 [Corymbia citriodora subsp. variegata][more]
DAD49723.18.9e-1361.84TPA_asm: hypothetical protein HUJ06_000153 [Nelumbo nucifera][more]
YP_009828929.11.2e-1268.66PsaB [Impatiens hawkeri] >QJC59237.1 PsaB [Impatiens hawkeri][more]
QTJ26054.11.2e-1268.66PsaB [Impatiens walleriana][more]
BLAST of Cla97C01G018755 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4QJB43.4e-1593.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=4340... [more]
A4QJJ83.4e-1593.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=726... [more]
A1EA073.4e-1593.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ... [more]
Q333323.4e-1593.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p... [more]
A4QK173.4e-1593.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Arabis hirsuta OX=78191 GN=psa... [more]
BLAST of Cla97C01G018755 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A411L6855.6e-1368.66Photosystem I P700 chlorophyll a apoprotein A2 OS=Corbichonia decumbens OX=11563... [more]
A0A6M3QGU65.6e-1368.66Photosystem I P700 chlorophyll a apoprotein A2 OS=Impatiens hawkeri OX=127127 GN... [more]
B2LBF77.4e-1368.66Photosystem I (Fragment) OS=Cleistes uliginosa OX=511786 GN=psaB PE=3 SV=1[more]
A0A0A6Z8681.3e-1293.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Macrozamia mountperriensis OX=... [more]
A0A1P8J7371.3e-1293.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Juglans mandshurica OX=91218 G... [more]
BLAST of Cla97C01G018755 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00340.12.4e-1693.33Photosystem I, PsaA/PsaB protein [more]
ATCG00350.13.0e-0637.84Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 32..83
e-value: 6.6E-17
score: 61.0
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 10..90
e-value: 7.8E-19
score: 68.9
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 37..82
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 38..82
NoneNo IPR availablePANTHERPTHR30128:SF63PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2coord: 38..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G018755.1Cla97C01G018755.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding