Cla97C01G017660 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G017660
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	protein SKIP34
Location	Cla97Chr01: 31134681 .. 31135467 (-)
RNA-Seq Expression	Cla97C01G017660
Synteny	Cla97C01G017660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCCTTGCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTGTAATTTTAGCGGTACCATCCAAAAATCGTTTTCCTTACTTGCATCTTCGTTCTTCTTATTCTCAGTCCTCGTTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTCACTTGTGAGTGGAATCGTGGAATTGATACCATTAACTCGTTCAATCGAAGGAGATTTTGAGTTTGTTGAATGAGAGCGAATTGCGAATCGCTGAAAAGAGCGTTTTGTTGTTTCTTGATGGAATTTATGGCAGTTTTCTATAATATAATTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGTTTCCAAAATTCTTTGGATGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGAAGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCAATCGCAGGAGAGTTGAGTATGCCGAATGAGAGAGAATCCATGAGAAGAATGTTTTGTTAG

mRNA sequence

ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCCTTGCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCGTTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTCACTTTTTTCTATAATATAATTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGTTTCCAAAATTCTTTGGATGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGAAGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCAATCGCAGGAGAGTTGAGTATGCCGAATGAGAGAGAATCCATGAGAAGAATGTTTTGTTAG

Coding sequence (CDS)

ATGTGTAACGGCCACCACCGATCTTTGTTCAGAGGTAGCCTTGCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCGTTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTCACTTTTTTCTATAATATAATTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGTTTCCAAAATTCTTTGGATGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGAAGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCAATCGCAGGAGAGTTGAGTATGCCGAATGAGAGAGAATCCATGAGAAGAATGTTTTGTTAG

Protein sequence

MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSSLIVFAIKSMDIFALDFTFFYNIISHFVSISQSNTGFQNSLDETLRKSSISSTEAISLGNGIVELIPLARPIAGELSMPNERESMRRMFC

Homology

[Close]

BLAST of Cla97C01G017660 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-36
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGSL PYQTSVPENG  SVVDNLRGRLEETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]

BLAST of Cla97C01G017660 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 7.5e-36
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]

BLAST of Cla97C01G017660 vs. NCBI nr
Match: XP_022978829.1 (protein SKIP34 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 8.2e-35
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHRSLFRGS++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLS 94

[Close]

BLAST of Cla97C01G017660 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-34
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHRSLFRG+++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSRLLEE
Sbjct: 1  MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLV VMEILENYLKR+Y  RQEYVVRLL+P S
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVS 94

[Close]

BLAST of Cla97C01G017660 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-34
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLE 60
          MCNGHHRSLFRGS++P QTSVPEN GDASVVDNLRGRL ETESRLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          EMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVS 95

[Close]

BLAST of Cla97C01G017660 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MC GH++SL   S +  +    +  D SVVD+LR RL ETE+RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSL--SSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKR VSVMEI+E +L+R++  +++ + RL SP S
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVS 92

[Close]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGSL PYQTSVPENG  SVVDNLRGRLEETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.6e-36
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.6e-36
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS  PYQTSVPENG ASVVDNLRGRLEETE RLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVS 94

[Close]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.0e-35
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MCNGHHRSLFRGS++P QTSVPENGDASVVDNLRGRL ETESRLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLS 94

[Close]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREAELSRLLE 60
          MCNGHHRSLFRGS++P QTSVPEN GDASVVDNLRGRL ETESRLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          EMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVS 95

[Close]

BLAST of Cla97C01G017660 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-17
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MCNGHHRSLFRGSLAPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREAELSRLLEE 60
          MC GH++SL   S +  +    +  D SVVD+LR RL ETE+RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSL--SSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS 95
          MKR VSVMEI+E +L+R++  +++ + RL SP S
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVS 92

The following BLAST results are available for this feature:

BLAST of Cla97C01G017660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657944.1	3.3e-36	91.49	protein SKIP34 [Cucumis sativus]	[more]
XP_008440533.1	7.5e-36	91.49	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]
XP_022978829.1	8.2e-35	87.23	protein SKIP34 [Cucurbita maxima]	[more]
XP_023544310.1	1.4e-34	87.23	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]
XP_022950522.1	3.1e-34	88.42	protein SKIP34 [Cucurbita moschata]	[more]

BLAST of Cla97C01G017660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	1.2e-15	52.13	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of Cla97C01G017660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR5	1.6e-36	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A5D3CN14	3.6e-36	91.49	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	3.6e-36	91.49	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A6J1IV54	4.0e-35	87.23	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]
A0A6J1GF20	1.5e-34	88.42	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]

BLAST of Cla97C01G017660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	8.3e-17	52.13	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G017660.2	Cla97C01G017660.2	mRNA