Cla97C01G016480 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G016480
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Late embryogenesis abundant protein
Location	Cla97Chr01: 30183818 .. 30184087 (-)
RNA-Seq Expression	Cla97C01G016480
Synteny	Cla97C01G016480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

mRNA sequence

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

Coding sequence (CDS)

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

Protein sequence

MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVASSVINRQGVP

Homology

[Close]

BLAST of Cla97C01G016480 vs. NCBI nr
Match: XP_038883215.1 (uncharacterized protein LOC120074234 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          MDKRE DQ QRQQEERKS RE+ERSEGIPL+SSPYVNYKDLEDYK+QAYGTQGHLQPKPG
Sbjct: 1  MDKRETDQLQRQQEERKSGREEERSEGIPLESSPYVNYKDLEDYKDQAYGTQGHLQPKPG 60

Query: 61 RGGGGGPTDAPTLSGDAVASSVINRQGVP 90
          RG GGGPTDAPTLSGDA ASSVINRQGVP
Sbjct: 61 RGDGGGPTDAPTLSGDAAASSVINRQGVP 89

[Close]

BLAST of Cla97C01G016480 vs. NCBI nr
Match: XP_016899224.1 (PREDICTED: uncharacterized protein LOC107990449 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          M+KREADQ Q Q EERKSEREKERSEG+PL+SSPYVNYKDLEDYK+QAYGTQGHLQPKPG
Sbjct: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGGPTDAPTLSGDA ASSV NRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. NCBI nr
Match: TYK12837.1 (Late embryogenesis abundant protein, LEA-18 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          M+KR+ADQ Q Q EE KSEREKERSEG+PL+SSPYVNYKDLEDYK+QAYGTQGHLQPKPG
Sbjct: 1  MEKRQADQSQGQNEEGKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGGPTDAPTLSGDA ASSV NRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. NCBI nr
Match: XP_023518886.1 (uncharacterized protein LOC111782271 [Cucurbita pepo subsp. pepo] >KAG7026953.1 hypothetical protein SDJN02_10961, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          MDKREADQP+RQQ ERKS  E+ER EGIPL++SPYVNYKDLEDYKNQAYG QGHL+PKP 
Sbjct: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLEPKPS 60

Query: 61 RGGGGGPTDAPTLSGDAVASSVINRQGVP 90
          RGGGGG TDAPTLSGDAV SSVINRQGVP
Sbjct: 61 RGGGGGSTDAPTLSGDAV-SSVINRQGVP 88

[Close]

BLAST of Cla97C01G016480 vs. NCBI nr
Match: XP_023003117.1 (uncharacterized protein LOC111496824 [Cucurbita maxima])

HSP 1 Score: 137.1 bits (344), Expect = 7.3e-29
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          MDKREADQP+RQQ ERKSE ++ER EGIPL++SPYVNYKDLEDYKNQAYG QGHL+PKP 
Sbjct: 2  MDKREADQPKRQQPERKSESKEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLEPKPS 61

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGG TDAPTLSGDA+ SSVINRQGVP
Sbjct: 62 RGGGGGGSTDAPTLSGDAL-SSVINRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL
Match: A0A1S4DTA9 (uncharacterized protein LOC107990449 OS=Cucumis melo OX=3656 GN=LOC107990449 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          M+KREADQ Q Q EERKSEREKERSEG+PL+SSPYVNYKDLEDYK+QAYGTQGHLQPKPG
Sbjct: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGGPTDAPTLSGDA ASSV NRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL
Match: A0A5D3CLL7 (Late embryogenesis abundant protein, LEA-18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004290 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 78/90 (86.67%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          M+KR+ADQ Q Q EE KSEREKERSEG+PL+SSPYVNYKDLEDYK+QAYGTQGHLQPKPG
Sbjct: 1  MEKRQADQSQGQNEEGKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGGPTDAPTLSGDA ASSV NRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL
Match: A0A6J1KLI9 (uncharacterized protein LOC111496824 OS=Cucurbita maxima OX=3661 GN=LOC111496824 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          MDKREADQP+RQQ ERKSE ++ER EGIPL++SPYVNYKDLEDYKNQAYG QGHL+PKP 
Sbjct: 2  MDKREADQPKRQQPERKSESKEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLEPKPS 61

Query: 61 R-GGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGGG TDAPTLSGDA+ SSVINRQGVP
Sbjct: 62 RGGGGGGSTDAPTLSGDAL-SSVINRQGVP 90

[Close]

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL
Match: A0A6J1HDU8 (uncharacterized protein LOC111463078 OS=Cucurbita moschata OX=3662 GN=LOC111463078 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          MDKREADQP+RQQ ERKS  E+ER EGIPL++SPYVNYKDLEDYKNQAYG QGHL+ KP 
Sbjct: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60

Query: 61 RGGGGGPTDAPTLSGDAVASSVINRQGVP 90
          R GGGG TDAPTLSGDAV SSVINRQGVP
Sbjct: 61 RRGGGGSTDAPTLSGDAV-SSVINRQGVP 88

[Close]

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL
Match: A0A0A0KGG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MDKREADQPQRQQEE-RKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+KREADQ Q Q +E RKSEREKERSE IPL+SSPYVNY+DLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAVAS 81
          GRGGGGGPTDAPTLSGDA A+
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of Cla97C01G016480 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-13
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 21 EKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVAS 80
          + E  + +PL++SPY  Y+D+EDYK  AYGT GH   KPG   GGG TDAPT SGDA  S
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAAPS 62

Query: 81 SV 83
          ++
Sbjct: 63 AI 62

[Close]

BLAST of Cla97C01G016480 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 8  QPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGP 67
          + Q++    + E ++ +++ +    +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 68 TDAPTLSG-----------DAVASSVINRQGVP 90
          TDAPT SG           D  ++  INRQGVP
Sbjct: 62 TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of Cla97C01G016480 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 8  QPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGP 67
          + Q++    + E ++ +++ +    +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 68 TDAPTLSG-----------DAVASSVINRQGVP 90
          TDAPT SG           D  ++  INRQGVP
Sbjct: 62 TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of Cla97C01G016480 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 53.5 bits (127), Expect = 9.9e-08
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 15 ERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLS 74
          E+K+E+ K+    +P   SPY+    LEDYK +AYG +GH +P PG GGG   TDAPT S
Sbjct: 15 EKKTEQVKDND--LP-TDSPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGS--TDAPTPS 74

Query: 75 GDAVASS 82
          GDA A++
Sbjct: 75 GDAPAAT 76

The following BLAST results are available for this feature:

BLAST of Cla97C01G016480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883215.1	4.4e-34	91.01	uncharacterized protein LOC120074234 [Benincasa hispida]	[more]
XP_016899224.1	1.4e-32	88.89	PREDICTED: uncharacterized protein LOC107990449 [Cucumis melo]	[more]
TYK12837.1	2.1e-31	86.67	Late embryogenesis abundant protein, LEA-18 [Cucumis melo var. makuwa]	[more]
XP_023518886.1	3.0e-30	85.39	uncharacterized protein LOC111782271 [Cucurbita pepo subsp. pepo] >KAG7026953.1 ...	[more]
XP_023003117.1	7.3e-29	83.33	uncharacterized protein LOC111496824 [Cucurbita maxima]	[more]

BLAST of Cla97C01G016480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C01G016480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTA9	6.9e-33	88.89	uncharacterized protein LOC107990449 OS=Cucumis melo OX=3656 GN=LOC107990449 PE=...	[more]
A0A5D3CLL7	1.0e-31	86.67	Late embryogenesis abundant protein, LEA-18 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1KLI9	3.5e-29	83.33	uncharacterized protein LOC111496824 OS=Cucurbita maxima OX=3661 GN=LOC111496824...	[more]
A0A6J1HDU8	1.0e-28	83.15	uncharacterized protein LOC111463078 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A0A0KGG1	5.7e-27	86.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493910 PE=4 SV=1	[more]

BLAST of Cla97C01G016480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33690.1	7.8e-13	54.84	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	1.2e-08	38.71	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.2	1.2e-08	38.71	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	9.9e-08	50.75	Late embryogenesis abundant protein, group 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 22..89 e-value: 8.6E-27 score: 93.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33922:SF9	EMBRYOGENESIS ABUNDANT PROTEIN GROUP 8 PROTEIN, PUTATIVE-RELATED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G016480.1	Cla97C01G016480.1	mRNA