Cla97C01G011965 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G011965
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase
Location	Cla97Chr01: 24752937 .. 24754053 (+)
RNA-Seq Expression	Cla97C01G011965
Synteny	Cla97C01G011965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGCTGAATTCGACTTCCAGTTTGAACATAGACCAGGTAAGGTCAACCAAGCAACAAACGCCCTCAGTCGAAAAAGTGAACATGTGGCCCTGTGCTTGTTTGCTCACCTGAAAGCCAATAGCCTGAATGGAACAGTCTGGGAAACCATCAAAACCCACCTACACAATGACACGGCTGCCCAAGCATTAATTTAGTTAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAGCACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGGTAGACAGAACGCTTCAACAGTATGCTCGAGGAGTATCTCCGACACTTTATTGAAGCGAGATAGAAAAATTGGGTCCAGATGTTGGATGTAGCTTAGTTCAGCTTTAACAGCCAGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

mRNA sequence

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGCTGAATTCGACTTCCAGTTTGAACATAGACCAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAGCACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

Coding sequence (CDS)

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGCTGAATTCGACTTCCAGTTTGAACATAGACCAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAGCACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

Protein sequence

MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRPAREGKTRQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALLKLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDGRVLPSVRHLLRLYVADNHSCRTSLTTPMRVRARKHTTSPKSGKNPQR

Homology

[Close]

BLAST of Cla97C01G011965 vs. NCBI nr
Match: KAA0050676.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 6.3e-95
Identity = 180/295 (61.02%), Postives = 205/295 (69.49%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
           MLA VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 130 MLATVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 189

Query: 61  ------------------------------------------------------AREGKT 120
                                                                 A+ GKT
Sbjct: 190 QSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 249

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------K 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL        K
Sbjct: 250 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKDKVEKVK 309

Query: 181 LAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMT 234
           +AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILVI+DRFSKYATF+ A K CS E T
Sbjct: 310 VAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETT 369

[Close]

BLAST of Cla97C01G011965 vs. NCBI nr
Match: KAA0059106.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 7.7e-93
Identity = 180/319 (56.43%), Postives = 205/319 (64.26%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVED+L  TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 235
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1039

[Close]

BLAST of Cla97C01G011965 vs. NCBI nr
Match: KAA0039608.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 7.7e-93
Identity = 181/318 (56.92%), Postives = 207/318 (65.09%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 935  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 994

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 995  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHVAQNVMNLAKAGKT 1054

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1055 RQFWVEEDLLVTKGNRLYVPKAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1114

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1115 RDEVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITYLPKVGDFEAILV 1174

[Close]

BLAST of Cla97C01G011965 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.7e-92
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 984  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1043

Query: 61   ------------------------------------------------------AREGKT 120
                                                                   + GKT
Sbjct: 1044 GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 1103

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1104 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1163

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1164 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1223

[Close]

BLAST of Cla97C01G011965 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-92
Identity = 180/318 (56.60%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 1001 MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1060

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 1061 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1120

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1121 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1180

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1240

[Close]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 118  KLAGLLEPLPVPSRPWESVSLDFITRLPKV-GEFEAILVIVDRFSKYATFVSAPKLCSVE 177
            +L GLL+PLP+    W  +S+DF+T LP        ILV+VDRFSK A F++  K     
Sbjct: 1180 RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDAT 1239

Query: 178  MTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---R 237
                L F++I    G P +I SDR+ R T   + EL + LG    +SS+ HPQTDG   R
Sbjct: 1240 QLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSER 1299

Query: 238  VLPSVRHLLRLYVADN 250
             + ++  LLR YV+ N
Sbjct: 1300 TIQTLNRLLRAYVSTN 1315

[Close]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-21
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 0


Query: 118  KLAGLLEPLPVPSRPWESVSLDFITRLPKV-GEFEAILVIVDRFSKYATFVSAPKLCSVE 177
            +L GLL+PLP+    W  +S+DF+T LP        ILV+VDRFSK A F++  K     
Sbjct: 1154 RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDAT 1213

Query: 178  MTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---R 237
                L F++I    G P +I SDR+ R T   + EL + LG    +SS+ HPQTDG   R
Sbjct: 1214 QLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSER 1273

Query: 238  VLPSVRHLLRLYVADN 250
             + ++  LLR Y + N
Sbjct: 1274 TIQTLNRLLRAYASTN 1289

[Close]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL
Match: A0A5A7U921 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001590 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.1e-95
Identity = 180/295 (61.02%), Postives = 205/295 (69.49%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
           MLA VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 130 MLATVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 189

Query: 61  ------------------------------------------------------AREGKT 120
                                                                 A+ GKT
Sbjct: 190 QSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 249

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------K 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL        K
Sbjct: 250 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKDKVEKVK 309

Query: 181 LAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSAPKLCSVEMT 234
           +AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILVI+DRFSKYATF+ A K CS E T
Sbjct: 310 VAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETT 369

[Close]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL
Match: A0A5A7UY33 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00110 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.8e-93
Identity = 180/319 (56.43%), Postives = 205/319 (64.26%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVED+L  TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 235
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1039

[Close]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL
Match: A0A5A7T9P9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00860 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.8e-93
Identity = 181/318 (56.92%), Postives = 207/318 (65.09%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 935  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 994

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 995  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHVAQNVMNLAKAGKT 1054

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1055 RQFWVEEDLLVTKGNRLYVPKAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1114

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1115 RDEVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITYLPKVGDFEAILV 1174

[Close]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 8.4e-93
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 984  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1043

Query: 61   ------------------------------------------------------AREGKT 120
                                                                   + GKT
Sbjct: 1044 GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 1103

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1104 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1163

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1164 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1223

[Close]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.4e-92
Identity = 180/318 (56.60%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLAEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LAEFDF+FEH+ 
Sbjct: 1005 MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1064

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

The following BLAST results are available for this feature:

BLAST of Cla97C01G011965 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050676.1	6.3e-95	61.02	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059106.1	7.7e-93	56.43	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039608.1	7.7e-93	56.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	1.7e-92	56.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	2.9e-92	56.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C01G011965 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	1.3e-21	41.18	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	3.7e-21	40.44	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.1e-20	39.68	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.1e-20	39.68	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.1e-20	39.68	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U921	3.1e-95	61.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7UY33	3.8e-93	56.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7T9P9	3.8e-93	56.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]
A0A5D3BQE4	8.4e-93	56.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C4R1	1.4e-92	56.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cla97C01G011965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 123..277 e-value: 4.2E-24 score: 86.9
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 1..52 e-value: 6.8E-10 score: 39.2
None	No IPR available	GENE3D	1.10.340.70		coord: 55..120 e-value: 2.0E-6 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..279
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 123..251
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 128..279 score: 15.147984
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 125..247
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011965.1	Cla97C01G011965.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0019538	protein metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity