Cla97C01G011600 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G011600
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Photosystem II CP43 reaction center protein
Location	Cla97Chr01: 21292946 .. 21294492 (-)
RNA-Seq Expression	Cla97C01G011600
Synteny	Cla97C01G011600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGGTATTTGACCTAGCTGAATTTATGAACAACCTGTGAAGGATTGACTTATCAATGATGGTTATATCAAATGGACACAAATATATCTACAGTGAGGAGAGTGCAACTACGGGCTTTAATGGAGTGTCCCGTTAGTTAACGAATGTTGGTTAACTAGGTTAAAGAGTTTGGCCGGTTAATCTTGGATCGTTGGAGCTCATGATCTGTAGGTCCATTAAGTCCCTCTACTAGCTCATAAATGGACTAAAATCTTAGATAATGTGGTGAATAAGTTTGAATCGTTCAAATCTTGGCTTAAGGAATGAAAGTTAGATATATACGATATATCGGCGTTTAATTACGAATTAAACGTACAAATAAAGTTAATTATAATATTTAAATATAATTTAAATATTAATCATATAAATAGGGATTCATATCGATTTTTTTTAGAAAAATCGGGACAAGTGGGAAAAATAATATTATTTTATTATTTAATATTAAAATAATAATATTTAATTAATTAAATATTAAATTATTTTTTATTTAATTATTTAATTATCTTTTTGAAATTAAAAATCAATTTTAATTCAATTTTGGAAATTCATTAAAAATTGATTTTAAAATTGATTTTTGAAGATTGGATTTTCCCACTAATTAAGCTAGGAGCTTGGTTGTCTTCTTCACAATTAACCAACAAATTAACCATTTTGTGTTGTCAAATTTTGATGCAATTGGATTGCATGTTATTCTTTAATAAATAGAGATGATTTTGACATAAAAATGGTTAAGAATTTTGTGAAATTAAGGGTTAATTTTGCAAAATTCCATCCATTGTTCATCTTCTTCCCAACCTTCATTCTTTCTCAAATTCACCACAATTTTGGATCCCACCATCTAATCTAAGCCTAGAGAATAGTAGAGAAGACTCTTGTGTTGGTCTACAACCAAGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGGTAAGTGTTCTTGAAACTTTGGTTTTTCTTCTTAATTGCATGTTTAATCCTCTAAATTGAGCATCTTAGAGTGAAAATTGATCAAATTAACTTCTGCTGCATGCTCATTAATCCATCATATCTTAACTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

mRNA sequence

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

Coding sequence (CDS)

ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCAACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAGCTGAGGAAGATAGCACATTTTAGGTGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA

Protein sequence

MALKEKKCNSEVNRGAGIHQELKKNLELQGLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGEKLRKIAHFRCYHIWRSLASSKDSMPSGKTPTNT

Homology

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: QUB01664.1 (photosystem II CP43 chlorophyll apoprotein [Amischotolype hispida])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: ATL60345.1 (photosystem II 44 kDa protein [Cubanola domingensis])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: YP_009917162.1 (photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva] >QDP70464.1 photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: YP_009771820.1 (photosystem II CP43 chlorophyll apoprotein [Baphia racemosa] >QIT02605.1 photosystem II CP43 chlorophyll apoprotein [Baphia racemosa])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. NCBI nr
Match: YP_010048332.1 (photosystem II CP43 chlorophyll apoprotein [Pentasachme caudatum] >QPK76686.1 photosystem II CP43 chlorophyll apoprotein [Pentasachme caudatum])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot
Match: Q7YJX6 (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot
Match: B1A931 (Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot
Match: A6MMB8 (Photosystem II CP43 reaction center protein OS=Chloranthus spicatus OX=13006 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot
Match: A6MMK3 (Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL
Match: A0A0G3FF74 (Photosystem II CP43 reaction center protein OS=Podococcus barteri OX=101629 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL
Match: A0A2Z5WMV9 (Photosystem II CP43 reaction center protein OS=Dendrobium shixingense OX=1269200 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL
Match: F5BZX2 (Photosystem II CP43 reaction center protein OS=Asclepias syriaca OX=48545 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 264 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 323

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 324 GLGKYLMRSPTGEVIFGGETMR 345

[Close]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL
Match: A0A0F6NZS4 (Photosystem II CP43 reaction center protein OS=Fagopyrum tataricum OX=62330 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

[Close]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL
Match: A0A1Y0AIC1 (Photosystem II CP43 reaction center protein OS=Andropogon fastigiatus OX=330559 GN=psbC PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 290 LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 349

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 350 GLGKYLMRSPTGEVIFGGETMR 371

[Close]

BLAST of Cla97C01G011600 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-41
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 31  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 90
           L ALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 91  GLGKYLMRSPTGEVIFGGEKLR 113
           GLGKYLMRSPTGEVIFGGE +R
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMR 357

The following BLAST results are available for this feature:

BLAST of Cla97C01G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
QUB01664.1	5.6e-39	97.56	photosystem II CP43 chlorophyll apoprotein [Amischotolype hispida]	[more]
ATL60345.1	5.6e-39	97.56	photosystem II 44 kDa protein [Cubanola domingensis]	[more]
YP_009917162.1	5.6e-39	97.56	photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva] >QDP70464.1 photos...	[more]
YP_009771820.1	5.6e-39	97.56	photosystem II CP43 chlorophyll apoprotein [Baphia racemosa] >QIT02605.1 photosy...	[more]
YP_010048332.1	5.6e-39	97.56	photosystem II CP43 chlorophyll apoprotein [Pentasachme caudatum] >QPK76686.1 ph...	[more]

BLAST of Cla97C01G011600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM32	7.3e-42	97.56	Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
Q7YJX6	7.3e-42	97.56	Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus...	[more]
B1A931	7.3e-42	97.56	Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=...	[more]
A6MMB8	7.3e-42	97.56	Photosystem II CP43 reaction center protein OS=Chloranthus spicatus OX=13006 GN=...	[more]
A6MMK3	7.3e-42	97.56	Photosystem II CP43 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]

BLAST of Cla97C01G011600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0G3FF74	2.7e-39	97.56	Photosystem II CP43 reaction center protein OS=Podococcus barteri OX=101629 GN=p...	[more]
A0A2Z5WMV9	2.7e-39	97.56	Photosystem II CP43 reaction center protein OS=Dendrobium shixingense OX=1269200...	[more]
F5BZX2	2.7e-39	97.56	Photosystem II CP43 reaction center protein OS=Asclepias syriaca OX=48545 GN=psb...	[more]
A0A0F6NZS4	2.7e-39	97.56	Photosystem II CP43 reaction center protein OS=Fagopyrum tataricum OX=62330 GN=p...	[more]
A0A1Y0AIC1	2.7e-39	97.56	Photosystem II CP43 reaction center protein OS=Andropogon fastigiatus OX=330559 ...	[more]

BLAST of Cla97C01G011600 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	2.2e-41	95.12	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 30..115 e-value: 1.8E-23 score: 83.0
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 30..113
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 59..120 e-value: 4.3E-27 score: 95.6
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 30..113
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 30..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011600.1	Cla97C01G011600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding