Cla97C01G008680 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G008680
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr01: 9228884 .. 9229078 (-)
RNA-Seq Expression	Cla97C01G008680
Synteny	Cla97C01G008680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTGGTTTCGCTGTGGCGGAGGAGGACGGAGATGGTTCGAGGGTCGAGGCGGAGATTGATGGTATTAAGGACGGCACCAACCATCGGAACGGCGAAGTGGAGTTCGTACATGGCCGGAGTGTTGGGAGCGATAACGGAGACGACGTGGCCTCTTTGGATGCCAATGGAAGAGAGGGAAGAGGCGAGTTGA

mRNA sequence

ATGAGTTTGGTTTCGCTGTGGCGGAGGAGGACGGAGATGGTTCGAGGGTCGAGGCGGAGATTGATGGTATTAAGGACGGCACCAACCATCGGAACGGCGAAGTGGAGTTCGTACATGGCCGGAGTGTTGGGAGCGATAACGGAGACGACGTGGCCTCTTTGGATGCCAATGGAAGAGAGGGAAGAGGCGAGTTGA

Coding sequence (CDS)

ATGAGTTTGGTTTCGCTGTGGCGGAGGAGGACGGAGATGGTTCGAGGGTCGAGGCGGAGATTGATGGTATTAAGGACGGCACCAACCATCGGAACGGCGAAGTGGAGTTCGTACATGGCCGGAGTGTTGGGAGCGATAACGGAGACGACGTGGCCTCTTTGGATGCCAATGGAAGAGAGGGAAGAGGCGAGTTGA

Protein sequence

MSLVSLWRRRTEMVRGSRRRLMVLRTAPTIGTAKWSSYMAGVLGAITETTWPLWMPMEEREEAS

Homology

[Close]

BLAST of Cla97C01G008680 vs. NCBI nr
Match: RHN56789.1 (hypothetical protein MtrunA17_Chr5g0433251 [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 2   SLVSLWRRRTEMVRGSRRRLMVLRTAPTIGTAKWSSYMAGVLGAITETTWPLWMPMEERE 61
           SL S WRR  EM+R SRR LM+LR AP  GTAKWSSYMAG+LGA+TETT P  +P E   
Sbjct: 51  SLDSQWRRMLEMIRASRRVLMLLRIAPVKGTAKWSSYMAGMLGAMTETTLPRRIPKEVMA 110

Query: 62  EAS 65
           EAS
Sbjct: 111 EAS 113

[Close]

BLAST of Cla97C01G008680 vs. ExPASy TrEMBL
Match: A0A396HTY8 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr5g0433251 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 2   SLVSLWRRRTEMVRGSRRRLMVLRTAPTIGTAKWSSYMAGVLGAITETTWPLWMPMEERE 61
           SL S WRR  EM+R SRR LM+LR AP  GTAKWSSYMAG+LGA+TETT P  +P E   
Sbjct: 51  SLDSQWRRMLEMIRASRRVLMLLRIAPVKGTAKWSSYMAGMLGAMTETTLPRRIPKEVMA 110

Query: 62  EAS 65
           EAS
Sbjct: 111 EAS 113

The following BLAST results are available for this feature:

BLAST of Cla97C01G008680 vs. NCBI nr


Match Name	E-value	Identity	Description
RHN56789.1	2.9e-11	66.67	hypothetical protein MtrunA17_Chr5g0433251 [Medicago truncatula]	[more]

BLAST of Cla97C01G008680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C01G008680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A396HTY8	1.4e-11	66.67	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr5g0433251 ...	[more]

BLAST of Cla97C01G008680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G008680.1	Cla97C01G008680.1	mRNA