Cla97C01G008455 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G008455
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionPentatricopeptide repeat-containing protein
LocationCla97Chr01: 8783559 .. 8786069 (+)
RNA-Seq ExpressionCla97C01G008455
SyntenyCla97C01G008455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTTGCATTATCTCAAATTTGCCATATTTCATTAGTTTTCATAAAGGTAATTGAAATCAAATATCACACCTCAATTGAAATCAAATAGCACTTTCTCATCAAACATGGCTTCCAACTCCAAGACTGGCTTATGCTTCTCCCATTGTTGCAATTTCTACCAAACCTAACCTCTCCTCTCTATTTACTCACTCTCCAACAATTCCATCATCTATAGTATCATTATAGATGGGCTCTGTAAGGATGGACAGGAATCTCAAGGAATGATTCCCAATGTTATGGTATTGCCAAAGAGTCATGTATATACCGGATTTTCTTAGATGGGCTATGTAAGAAATGGTTGTTTATTTGAAGCGACACAACTTTTTAATGAGTTAAAATCATACAACTTGAAATTGAACATTGAAATCTTTAATTGCCTAATTGATGACCTATGTAAAGTAGGAAAACTTGAAACTGCTTGAGAGTTGTTGCGTTCAAATTTTGTTTGAAAGAATTGTGAACCTAGCCTTATGTCGTGCTTATAAATTGAAAAATATTTTAGTTAAACACAAGTTTTCCTATAAAAAATCAAAGTGCAAATTTTGATAGGTTTCCTGGAGAATCCAGGGTTGAACACGAAAATTTTAAAAAAATTATATGTTAGAACCTTGTTGACTTAATGCAATTTTCTATACAAAGAAGCCTTGAATATAATACGTACAAATGAATATATACAAGTGTGAAGATGGTTGGATGAACATGGAAGATGATGTTGTGTGGAATGTGACAATGGTGAAAATTGTGAGTACAATTACAATCACAATCAAATAGCATGCATTGAGGAATGGAAAAATCAATGAAGAAAGTAGGGTTGAGGGGAGTTCACTACCATTTTCTTAGGTCATGCATAAACATGCGTTCATATTCGAAACTCTAAAGTTAAGAAATAACCTCTCAATGCTTCTAAGCCACATTTATCTTATCTCTAAGATGCATGCAGTGTTGAAAGAATAATGTCCAACCACCGATTGCAACTTCTTGATTTCAGAGGCTCTAGATAGTGGCTGTTTGAAGTATTTGCACATATGGAGGGGATGAACTCTCTCTTTTCGATAGGTAAAATTGAGCTCTCACTCAGAATTTCTCAAAGAGAAGCTCAAGGTTGAAGATGGAAATGGAGAAGGAGGACATTCGACATAACTTTCACTATATCATCTTTCAATCATCTGAAGTTGAATTCTTGCGGGTTATTTATAGGCGTCCAAAAGGTAGTTCTCATGATTGCATAACACCTTTGAATTTAATTTCATGCCCTTCTGCGCAGATTTTTTCAATTAGTCATCCACTTGCATTTTGACACGACAGTCACCGCCAACGCGTTCATCAGTTTTCTTTTTGATTCGTCTCGACGTCGAGTTCTCCGACACGAGGATCAACTGTTGGCTTGATCTAACTTTATCTGGTAGCATCTTTGATTGTCCTTGGCTATTTTTCGACTTCTTGTTATTGAAATCTTGCATCCAAAAGATATAAAAACCATAATTTCTAGGATAAAAGATTTTGTAAACAACTTGAATAGATCTTTTTATGCTATTTTCTTCTCAACTTAATGTATTTTCTTGTAAATTACTCTAATTATTCCAAATAAAGAAACTTGTATTTCTACAAGTTGTTAAGAGCTTTTCAAAAACCTATCCCAATAAGGGTTTCAACTAGATTTTGTGACTTATTCTATTATGATCCATGAGTTTTTTTAGGAGGGACAAGTAGATAACGCAAATATTTTGTTTCAAAGATGGAAAAAAAATGGTTGTACCCCCAACATAATTACTTATAATATACTTTTGCGTGGTTTATGCCAAAGTAATAAATTAGATGAGGTGGTTGAACTTCTTCATAGGATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGGTTTACTATCCAAGAGTGTCGATGTTGATAATAGAACAGTTTCCATAGACTTATTAAGAGCTATATGACTTGAAATTTTCTACTCAGCTTCAAGAAGGAACGACACATAGGTTCATGGACTCGATAGGTTTCCATTTCTTTTCCCTCTCTATTCCAACTTTTATTTTTGTAGATTGCTTGCCTTTATAGATCGTTTCATCGTGATTTCTGATATGTGTTATTGAAGATTACTTGGTTGTAGTTTTTACTCTTTCTTCATTGATCATTTTTGTTTTGCTAATTGATTTTAGGAGTTAAAAAAATTGATAAGGGACAAACACTTCTTCAACTAATGTGGTACATGAGTTAGGTTCATTGACAAATTCACCGGGACTCTTGGCCTTCTAATAAAGTTTTAATTAGTATGTAGATTGATCTGTTGATTACTTTATTTCTTTATTTTTTTATTTCAATAATTTTTCTAAACTTCTTTGTACTTGATATTTTTTTTTTTTTTTTTTTGTAGTTTGATGAAGAGTTATTCACTGCGTGCAATGTCTTGA

mRNA sequence

ATGAATATTTGCATTATCTCAAATTTGCCATATTTCATTAGTTTTCATAAAGATGGGCTCTGTAAGGATGGACAGGAATCTCAAGGAATGATTCCCAATGTTATGGTATTGCCAAAGAGTCATGAGGGACAAGTAGATAACGCAAATATTTTGTTTCAAAGATGGAAAAAAAATGGTTGTACCCCCAACATAATTACTTATAATATACTTTTGCGTGGTTTATGCCAAAGTAATAAATTAGATGAGGTGGTTGAACTTCTTCATAGGATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGTTTGATGAAGAGTTATTCACTGCGTGCAATGTCTTGA

Coding sequence (CDS)

ATGAATATTTGCATTATCTCAAATTTGCCATATTTCATTAGTTTTCATAAAGATGGGCTCTGTAAGGATGGACAGGAATCTCAAGGAATGATTCCCAATGTTATGGTATTGCCAAAGAGTCATGAGGGACAAGTAGATAACGCAAATATTTTGTTTCAAAGATGGAAAAAAAATGGTTGTACCCCCAACATAATTACTTATAATATACTTTTGCGTGGTTTATGCCAAAGTAATAAATTAGATGAGGTGGTTGAACTTCTTCATAGGATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGTTTGATGAAGAGTTATTCACTGCGTGCAATGTCTTGA

Protein sequence

MNICIISNLPYFISFHKDGLCKDGQESQGMIPNVMVLPKSHEGQVDNANILFQRWKKNGCTPNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCTKAKKYKECLDLLPSLMKSYSLRAMS
Homology
[Close]
BLAST of Cla97C01G008455 vs. NCBI nr
Match: XP_038897332.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 65/122 (53.28%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK G              +G+ PNV     M+     +GQVD ANILFQ  ++NGCT
Sbjct: 448 DGLCKVGTLETAWELFKKLSQEGLQPNVVTYNIMIHGFCRKGQVDKANILFQHMEENGCT 507

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PN+IT N LLRG C+SNK  EVVELLHRMV +DVSPD  TCT       K +KY+EC+DL
Sbjct: 508 PNVITCNTLLRGFCESNKSKEVVELLHRMVQRDVSPDVRTCTIVVDMLCKDEKYRECIDL 567

[Close]
BLAST of Cla97C01G008455 vs. NCBI nr
Match: XP_008451225.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo] >XP_016901074.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK+G+             +G+ PNV     M+     EGQVD AN+L Q+ + NGC 
Sbjct: 439 DGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVDKANVLIQKMETNGCN 498

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PNIITYN L+RG  +SNKLDEVV+LLH MV KDV PDA TC+       K +KY+ECLDL
Sbjct: 499 PNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVVDMLCKDEKYQECLDL 558

[Close]
BLAST of Cla97C01G008455 vs. NCBI nr
Match: KAA0059628.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK+G+             +G+ PNV     M+     EGQVD AN+L Q+ + NGC 
Sbjct: 439 DGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVDKANVLIQKMETNGCN 498

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PNIITYN L+RG  +SNKLDEVV+LLH MV KDV PDA TC+       K +KY+ECLDL
Sbjct: 499 PNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVVDMLCKDEKYQECLDL 558

[Close]
BLAST of Cla97C01G008455 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 65/122 (53.28%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK G+             +G+ PNV     M+     +GQVDNANILFQ  ++N CT
Sbjct: 506 DGLCKVGKLETAWELFKKLSQEGLQPNVVTYNIMIHGFCRKGQVDNANILFQHMEENDCT 565

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PN+IT N LLRG C+SNK  EVVELLHRMV +DV PD  TCT       K +KY+ECLDL
Sbjct: 566 PNVITCNTLLRGFCESNKSKEVVELLHRMVQRDVLPDVGTCTIVIDMLCKDEKYRECLDL 625

[Close]
BLAST of Cla97C01G008455 vs. NCBI nr
Match: XP_011659251.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 6.6e-23
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK G+            ++G  PNV     M+     EGQVD AN+L Q+ + NGCT
Sbjct: 337 DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 396

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITC-------TKAKKYKECLDL 117
           P+IITYN L+RG  +SNKL+EVV+LLHRM  KDVSPDAITC       +K +KY+ECL L
Sbjct: 397 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 456

[Close]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 37/105 (35.24%), Postives = 51/105 (48.57%), Query Frame = 0 

Query: 19  GLCKDGQESQG-----------MIPNVMVLPK-----SHEGQVDNANILFQRWKKNGCTP 78
           GLCK G+ + G           ++PNV+           EG++  AN L++     G +P
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 79  NIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCTKAKK 108
           NIITYN L+ G C  N+L E   +L  MV    SPD +T T   K
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376

[Close]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 32/82 (39.02%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 18  DGLCKDGQESQGMIPNVMVLPKSHEGQVDNANILFQRWKKNGCTPNIITYNILLRGLCQS 77
           DGLCKDG+  Q M                    LF+     GC PN++TY  L+ GLC+ 
Sbjct: 270 DGLCKDGRSLQAM-------------------ELFEMMMARGCRPNMVTYTTLITGLCKE 329

Query: 78  NKLDEVVELLHRMVHKDVSPDA 100
            K+ E VELL RM  + + PDA
Sbjct: 330 QKIQEAVELLDRMNLQGLKPDA 332

[Close]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 35/100 (35.00%), Postives = 46/100 (46.00%), Query Frame = 0 

Query: 18  DGLCK-----------DGQESQGMIP-----NVMVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK           D  +S+G  P     NV++     +G +     L       GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAIT 102
           PN +TYN L+ GLC   KLD+ V LL RMV     P+ +T
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

[Close]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match: Q9SV46 (Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g54980 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 0 

Query: 18  DGLCKDGQESQG-----------------MIPNVMVLPKSHEGQVDNANILFQRWKKNGC 77
           +GLCK GQ S+                  M  N ++     EG++D+A   ++    NG 
Sbjct: 556 NGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615

Query: 78  TPNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPD 99
           +PN+ITY  L+ GLC++N++D+ +E+   M +K V  D
Sbjct: 616 SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLD 653

[Close]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match: Q9CA58 (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana OX=3702 GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 57  KNGCTPNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAIT 102
           + GC PN+ T+NILL  LC+  KLDE + LL  M +K V+PDA+T
Sbjct: 524 EKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568

[Close]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK+G+             +G+ PNV     M+     EGQVD AN+L Q+ + NGC 
Sbjct: 439 DGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVDKANVLIQKMETNGCN 498

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PNIITYN L+RG  +SNKLDEVV+LLH MV KDV PDA TC+       K +KY+ECLDL
Sbjct: 499 PNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVVDMLCKDEKYQECLDL 558

[Close]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK+G+             +G+ PNV     M+     EGQVD AN+L Q+ + NGC 
Sbjct: 439 DGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVDKANVLIQKMETNGCN 498

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           PNIITYN L+RG  +SNKLDEVV+LLH MV KDV PDA TC+       K +KY+ECLDL
Sbjct: 499 PNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVVDMLCKDEKYQECLDL 558

[Close]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match: A0A0A0K730 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374720 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.2e-23
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK G+            ++G  PNV     M+     EGQVD AN+L Q+ + NGCT
Sbjct: 94  DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 153

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITC-------TKAKKYKECLDL 117
           P+IITYN L+RG  +SNKL+EVV+LLHRM  KDVSPDAITC       +K +KY+ECL L
Sbjct: 154 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 213

[Close]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match: A0A0A0K5M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.5e-23
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0 

Query: 20  LCKDGQESQGMIPNVMVLPKSHEGQVDNANILFQRWKKNGCTPNIITYNILLRGLCQSNK 79
           L ++G +S  +  N+M+      GQVD ANILF++ ++NGCTP+IITYN LL G CQSNK
Sbjct: 257 LYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNK 316

Query: 80  LDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDLLPSLM 120
            DEVV+LLH+M+ +D+SPDAI+C        K +KY+ECLDLLP  +
Sbjct: 317 SDEVVKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLLPRFL 363

[Close]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 18  DGLCKDGQ-----------ESQGMIPNV-----MVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK G+             +G+ PNV     M+      G VD ANILF++ ++NGCT
Sbjct: 439 DGLCKAGKLETAWELFEKLSQEGLQPNVVTYNIMISGFCKAGLVDKANILFEKMEENGCT 498

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCT-------KAKKYKECLDL 117
           P+IITY+ILLR  CQSNK +EVV LLH+MV +DVSPD   CT       K +KYKECLDL
Sbjct: 499 PSIITYDILLRRFCQSNKSEEVVRLLHKMVQRDVSPDVSICTIVVDMLCKDEKYKECLDL 558

[Close]
BLAST of Cla97C01G008455 vs. TAIR 10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases )

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-10
Identity = 37/105 (35.24%), Postives = 51/105 (48.57%), Query Frame = 0 

Query: 19  GLCKDGQESQG-----------MIPNVMVLPK-----SHEGQVDNANILFQRWKKNGCTP 78
           GLCK G+ + G           ++PNV+           EG++  AN L++     G +P
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 79  NIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAITCTKAKK 108
           NIITYN L+ G C  N+L E   +L  MV    SPD +T T   K
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376

[Close]
BLAST of Cla97C01G008455 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-10
Identity = 32/82 (39.02%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 18  DGLCKDGQESQGMIPNVMVLPKSHEGQVDNANILFQRWKKNGCTPNIITYNILLRGLCQS 77
           DGLCKDG+  Q M                    LF+     GC PN++TY  L+ GLC+ 
Sbjct: 270 DGLCKDGRSLQAM-------------------ELFEMMMARGCRPNMVTYTTLITGLCKE 329

Query: 78  NKLDEVVELLHRMVHKDVSPDA 100
            K+ E VELL RM  + + PDA
Sbjct: 330 QKIQEAVELLDRMNLQGLKPDA 332

[Close]
BLAST of Cla97C01G008455 vs. TAIR 10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 35/100 (35.00%), Postives = 46/100 (46.00%), Query Frame = 0 

Query: 18  DGLCK-----------DGQESQGMIP-----NVMVLPKSHEGQVDNANILFQRWKKNGCT 77
           DGLCK           D  +S+G  P     NV++     +G +     L       GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 78  PNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAIT 102
           PN +TYN L+ GLC   KLD+ V LL RMV     P+ +T
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

[Close]
BLAST of Cla97C01G008455 vs. TAIR 10
Match: AT3G54980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 0 

Query: 18  DGLCKDGQESQG-----------------MIPNVMVLPKSHEGQVDNANILFQRWKKNGC 77
           +GLCK GQ S+                  M  N ++     EG++D+A   ++    NG 
Sbjct: 556 NGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615

Query: 78  TPNIITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPD 99
           +PN+ITY  L+ GLC++N++D+ +E+   M +K V  D
Sbjct: 616 SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLD 653

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BLAST of Cla97C01G008455 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 0 

Query: 15  FHKDGLCKDGQE------SQGMIPNVMVLPK-----SHEGQVDNANILFQRWKKNGCTPN 74
           F K+G  ++ +E       +G+ P+ +           E Q+D AN +       GC PN
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 75  IITYNILLRGLCQSNKLDEVVELLHRMVHKDVSPDAIT 102
           I T+NIL+ G C++N +D+ +EL  +M  + V  D +T
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVT 424

The following BLAST results are available for this feature:
BLAST of Cla97C01G008455 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897332.11.7e-2353.28pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benin... [more]
XP_008451225.12.3e-2352.46PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
KAA0059628.12.3e-2352.46pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161... [more]
XP_038896203.15.1e-2353.28pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida][more]
XP_011659251.16.6e-2352.46pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 ... [more]
BLAST of Cla97C01G008455 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C7Q73.3e-0935.24Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS... [more]
Q9FNL21.3e-0839.02Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
O494362.1e-0835.00Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX... [more]
Q9SV461.8e-0731.63Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidop... [more]
Q9CA582.4e-0753.33Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis th... [more]
BLAST of Cla97C01G008455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DYL61.1e-2352.46pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A5D3C8J01.1e-2352.46Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0K7303.2e-2352.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374720 PE=4 SV=1[more]
A0A0A0K5M05.5e-2353.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387770 PE=4 SV=1[more]
A0A5A7UUW82.1e-2251.64Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Cla97C01G008455 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G12700.12.4e-1035.24ATP binding;nucleic acid binding;helicases [more]
AT5G46100.18.9e-1039.02Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G20090.11.5e-0935.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G54980.11.3e-0831.63Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12620.11.7e-0830.61Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 58..91
e-value: 9.5E-12
score: 44.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 65..99
e-value: 2.6E-10
score: 37.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..97
score: 12.769972
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 19..127
e-value: 3.4E-18
score: 68.1
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 18..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G008455.1Cla97C01G008455.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050794 regulation of cellular process
molecular_function GO:0005515 protein binding