Cla97C01G006753 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G006753
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr01: 6799465 .. 6799845 (+)
RNA-Seq ExpressionCla97C01G006753
SyntenyCla97C01G006753
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCAAAAAAACGCTCCTATTTACTCAAGCCTTTCCCCAAGCACTTTGTCAGGGAAAAGACTTCTTTTATTAACTCGTGGTCTCTGATTGTGAACTTGGATTTGCTCGAGAATTGTTGTGTTAAAGTTCAAGTTCCTAGGCTTTCAAAAAAGTCAGTTTCCTCCCCCTCGGATCAATCCTCCTTTTCCTTTTCAGACTTTACAATTCCAGGCTGTAAAGTAAATTTTGTTAGAGGTTTTCCGGAAAGACTTTCAAGCAAAATGCACCACAAACAACAAGTTTTAGAAAAGGATTCAGATGAAGTCTCTATGGTAAGTGCTAGTAGCGAAGAATTAGAAAATCTTGTTTTGGAGGAGCCCCACGAGGAAAAGATTTAG

mRNA sequence

ATGAAGGCAAAAAAACGCTCCTATTTACTCAAGCCTTTCCCCAAGCACTTTGTCAGGGAAAAGACTTCTTTTATTAACTCGTGGTCTCTGATTGTGAACTTGGATTTGCTCGAGAATTGTTGTGTTAAAGTTCAAGTTCCTAGGCTTTCAAAAAAGTCAGTTTCCTCCCCCTCGGATCAATCCTCCTTTTCCTTTTCAGACTTTACAATTCCAGGCTGTAAAGTAAATTTTGTTAGAGGTTTTCCGGAAAGACTTTCAAGCAAAATGCACCACAAACAACAAGTTTTAGAAAAGGATTCAGATGAAGTCTCTATGGTAAGTGCTAGTAGCGAAGAATTAGAAAATCTTGTTTTGGAGGAGCCCCACGAGGAAAAGATTTAG

Coding sequence (CDS)

ATGAAGGCAAAAAAACGCTCCTATTTACTCAAGCCTTTCCCCAAGCACTTTGTCAGGGAAAAGACTTCTTTTATTAACTCGTGGTCTCTGATTGTGAACTTGGATTTGCTCGAGAATTGTTGTGTTAAAGTTCAAGTTCCTAGGCTTTCAAAAAAGTCAGTTTCCTCCCCCTCGGATCAATCCTCCTTTTCCTTTTCAGACTTTACAATTCCAGGCTGTAAAGTAAATTTTGTTAGAGGTTTTCCGGAAAGACTTTCAAGCAAAATGCACCACAAACAACAAGTTTTAGAAAAGGATTCAGATGAAGTCTCTATGGTAAGTGCTAGTAGCGAAGAATTAGAAAATCTTGTTTTGGAGGAGCCCCACGAGGAAAAGATTTAG

Protein sequence

MKAKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKDSDEVSMVSASSEELENLVLEEPHEEKI
Homology
BLAST of Cla97C01G006753 vs. NCBI nr
Match: XP_038887514.1 (RNA-binding protein 39-like isoform X1 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 8.3e-10
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 3   AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP 48
           +KK S LLKPFP+HF+R+KTSF NSW+ + N DLLE CCVKVQ+P
Sbjct: 293 SKKHSRLLKPFPEHFIRKKTSFFNSWTTLANSDLLEECCVKVQIP 337

BLAST of Cla97C01G006753 vs. NCBI nr
Match: KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 2   KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSD 61
           K  KR+Y L KPF K F R++TSF NSW+ I N DLLE  CVK+QVP +   KSV S S 
Sbjct: 183 KVPKRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIVQNKSVISSSS 242

Query: 62  QSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKDSDEVSMVSASSEELE 115
            +  + S  +     V+ VRG               +  DS+E S+VS SSE+LE
Sbjct: 243 LNHINHSSGSSQAHHVSLVRG-------------TRIPLDSEEESVVSVSSEDLE 284

BLAST of Cla97C01G006753 vs. NCBI nr
Match: XP_038876689.1 (uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_038876690.1 uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-08
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 5   KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP-RLSKKSVSSPSDQSSF 64
           + S+LLKPFPK+F R K+S + +WSL+ N +LLE+CC +VQ+P   +++SV  P+  SS 
Sbjct: 172 RSSHLLKPFPKYFERRKSSIVKTWSLLANSNLLEDCCARVQIPIDKAERSVIPPNFPSS- 231

Query: 65  SFSDFTIPGCKVN------FVRGFPERLSSKMHHKQQVLEKDSDEVSMVSASSEELE 115
                T P    N      +V+G P  +        + L ++ DE S+ S SSE+L+
Sbjct: 232 -----TTPQLGKNLDLSFIYVQGSPISVFG-----SKKLPQEYDEASIASVSSEDLD 277

BLAST of Cla97C01G006753 vs. NCBI nr
Match: XP_038886519.1 (uncharacterized protein LOC120076693 isoform X2 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 2   KAKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSKKS 54
           K   + +L +P+ KHF+R+KTSF N W+ ++N DLLE+CC+KVQ+P  S  S
Sbjct: 228 KLTSKPHLPRPYQKHFIRKKTSFRNIWTTMMNADLLEDCCIKVQIPICSTTS 279

BLAST of Cla97C01G006753 vs. NCBI nr
Match: XP_038876692.1 (uncharacterized protein LOC120069082 isoform X2 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-06
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 5   KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP 48
           + S+LLKPFPK+F R K+S + +WSL+ N +LLE+CC +VQ+P
Sbjct: 172 RSSHLLKPFPKYFERRKSSIVKTWSLLANSNLLEDCCARVQIP 214

BLAST of Cla97C01G006753 vs. ExPASy TrEMBL
Match: A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 0

Query: 2   KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSD 61
           K  KR+Y L KPF K F R++TSF NSW+ I N DLLE  CVK+QVP +   KSV S S 
Sbjct: 183 KVPKRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIVQNKSVISSSS 242

Query: 62  QSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKDSDEVSMVSASSEELE 115
            +  + S  +     V+ VRG               +  DS+E S+VS SSE+LE
Sbjct: 243 LNHINHSSGSSQAHHVSLVRG-------------TRIPLDSEEESVVSVSSEDLE 284

BLAST of Cla97C01G006753 vs. ExPASy TrEMBL
Match: A0A0A0KHK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 3   AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSK-KSVSSP 58
           +++ S L K F KHF R+KTSF NSW+ I N D+LE  CVK+QVP L + +S S P
Sbjct: 126 SQRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASLP 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887514.18.3e-1068.89RNA-binding protein 39-like isoform X1 [Benincasa hispida][more]
KAA0057401.11.6e-0843.48hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301... [more]
XP_038876689.15.9e-0837.61uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_03887669... [more]
XP_038886519.13.2e-0650.00uncharacterized protein LOC120076693 isoform X2 [Benincasa hispida][more]
XP_038876692.14.2e-0655.81uncharacterized protein LOC120069082 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UV767.5e-0943.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KHK41.0e-0553.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G006753.1Cla97C01G006753.1mRNA