Cla97C01G005220 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G005220
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr01: 4938636 .. 4941063 (+)
RNA-Seq ExpressionCla97C01G005220
SyntenyCla97C01G005220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAACACAAAATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGTACATTTCCCATGAACTTTTTTTTTTTTTTTTTCCTTCTTCTTTTTTTTTTTGCTAACCAATATCAATATGAAAAGTTTGTAAGTTCAAGCTTTTTCAGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGAGATGATATTATGAACTATTTTTTTTTTTTTTTTTCTTTTAGTATCTTTCTTTTAAGACAACTTGAAGGTAGCGCAAAGTTATTATTAAAGTTCTATATCAAACTTCATTTTTTAAGTATGCCAGTAATTTGAAACAAGAAAAAAGTATATATATATATATATATATATATATATATTTAAGATGGTTGATTAGTTCTTGTTTGTTATGAAATCATGTTAATCTCAATTTAGGCTCAAAAGAATTATGTTGTTGGTAGAACTAAATATTAAAAAAAAAAAAAAAGTGTAAACCCAAGTGCATAAGCAAGTTTAAATATAGTGAAAATTACCAAGGTTGTTGATCTCTAGATTGATTGGATTTCTAGTAGTTCATCTAAGTGTTGGAAATACTAGCATTTGATTTTATACCCAAGTGCATGAGTCAAATCTTAATATAGTGAAAGTAAATTACAAATGTTGTTTTCCTATGGATTGGGTTTATAGCTCATCTAAAGCACAACAAATACAAAGATTTGTGTTGGTAGAATTAATTAAAATTAATATAAATGAATAAAATCAGTGATCGAAAATCTGTAATATTGAATTTTTTAATTTAATTAAATTGAATGTAGTAATAAGTTTATCTAAGGTCATAACTATCTCTCCAAGCACAAATAATTTTCTTGAAAATTAAGAAACTAATATCCCTATCTAGTTTCATTAACATGCAAGGCCTTAAATCTATTTTTATATATATTTTTTAATAACTATGTAGGCAGCCTTAAATCAATCAATCTTAGATGAATGAAAATAAAAGCACTACAACACATATTGAATTAATGAAACCATAAAAATTCAAAGGTATATAAATCCCTAAAAACAAGAATATAATTAGCTACGAATCAATAAAATAGTGACAATGCCTCATCCTAAAATCCATCACGAAAGAACAACAAATGGTTTGGCATGTCAATCCCTTGTTCTTGGAACAATCTCCACAATGTTTTTCATTTTCATTCAAGCCCAAGCTTTTCCTCCTAAAAAAAGGGCTCTCGAATGCAATTCTTTATGGTAGGAGTGGAGGTAGCATCTCGATGCTGCCCAAATACACATAGTGTTGCATTTCAGTGTGGTTGGACAACGTCTCACCATTGTCCCTCGAAGTATTTTTTTCTTTTTTAATTGATTCGATTTTCCTCAAATTACATCAATTACTCAATTTTGTACCATATGCTTAATTTTTATAAAACAAACAAATATGTGCATGATAACAACCAATTAAACATCAAAACAAAACAATAAATAAATCTCAGAATTAGAGGAGTCCTATCTATCGTACAATATTAATTTCAAATATGCCCTCAAATTTAACAAATTGTTTTACAAATTATATAATTAATCCAATCCTCTAATATATATATTAAAAAAGAAATGATTGGTCATTTGCCACATTCTTGGGCTAAAGAGTAGAGCATGCCTATGAGAAAATAATTTGTCAAAGACTAACATTTCAATAGGACAATTTTAGAAGCAACTCTAGCCAAAGGCATTTCCTAGTGTGAAATTTGAAGGGTTGATAATTTCCTCCATTTATATTATGTCATGAAAATCATGTCACACCCCAACATCAATTCTTTTAAAACTTTCTTCCTTAACAAGCTGCCCCAACAATTAAGCCACCATGCAGGAAAATATTTTTTCCAGCACCTACGCATGAGAACCATGGGTCTTGAGTTCAATAAGATATGTGATGAGAGGATTCGAACTTTTAACCTCTTGGATGATTGCATGTGTTTTTAACTAGTTGAGTTATGTTTACTAATAAATGGCATATTTATGCCACTTTTAGCCTCGAGTTTTTTTTAGTTATTGTATGGATAGTTGAGTTTTCATGGGTTATTTGTTTGAATCTCAGGTTTTGAGGCTTTAGAGCACAATAGAAGAATTTACGGATAAATTGGAGCTTTTCGGATATTAAAGTGGATTAAATAAGGAGTTCCAACAGTAAGAAGAAGAGGCAGAGCAGCGCCACGACGTTTTAGCACAAAAGCTAGAAACCTGACAAAGGGTGATGGCACTGCAATGCTACAATGTTTGCCAAAAAGAAGAGTCATTCGTGCTACCTTTAATTTTCAG

mRNA sequence

GATGAACACAAAATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGTTCAAGCTTTTTCAGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTTTTGAGGCTTTAGAGCACAATAGAAGAATTTACGGATAAATTGGAGCTTTTCGGATATTAAAGTGGATTAAATAAGGAGTTCCAACAGTAAGAAGAAGAGGCAGAGCAGCGCCACGACGTTTTAGCACAAAAGCTAGAAACCTGACAAAGGGTGATGGCACTGCAATGCTACAATGTTTGCCAAAAAGAAGAGTCATTCGTGCTACCTTTAATTTTCAG

Coding sequence (CDS)

ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGTTCAAGCTTTTTCAGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTTTTGAGGCTTTAGAGCACAATAGAAGAATTTACGGATAA

Protein sequence

MASNKKHLTILAIVLYLMLFLISTYGAARILNPNVQAFSGNMKALKIKVIVVGRIVRRDLAHGGNYGFEALEHNRRIYG
Homology
[Close]
BLAST of Cla97C01G005220 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_000417 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNVQAFSGNMKALKIKVIVVG-RIVRRD 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ N     G+MK  +IKVIVVG RIVRRD
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLN-----GSMKVREIKVIVVGRRIVRRD 63

Query: 61 LAHGGNYG 68
          LAHGGNYG
Sbjct: 64 LAHGGNYG 65

[Close]
BLAST of Cla97C01G005220 vs. NCBI nr
Match: KAG6605659.1 (hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNVQAFSGNMKALKIKVIVVGRIVRRDL 60
          M SNKKHL  L IVLYLMLFL S+YGAAR+  PN     G+M A ++K I +GRI+RRDL
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFL-SSYGAARVFIPN-----GHMNAFEMKPITLGRIMRRDL 60

Query: 61 AHGGNY 67
          A+GGNY
Sbjct: 61 AYGGNY 60

[Close]
BLAST of Cla97C01G005220 vs. NCBI nr
Match: KAG7035570.1 (hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNVQAFSGNMKALKIKVIVVGRIVRRDL 60
          M SNKKHL  L IVLYLMLFL S+YGAAR+  PN     G+M A ++K I +GRI+RRDL
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFL-SSYGAARVFIPN-----GHMNAFEMKPITLGRIMRRDL 60

Query: 61 AHGGNY 67
          A+GGNY
Sbjct: 61 AYGGNY 60

[Close]
BLAST of Cla97C01G005220 vs. ExPASy TrEMBL
Match: A0A0A0KL54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.2e-13
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNVQAFSGNMKALKIKVIVVG-RIVRRD 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ N     G+MK  +IKVIVVG RIVRRD
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLN-----GSMKVREIKVIVVGRRIVRRD 63

Query: 61 LAHGGNYG 68
          LAHGGNYG
Sbjct: 64 LAHGGNYG 65

The following BLAST results are available for this feature:
BLAST of Cla97C01G005220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50358.11.9e-1275.00hypothetical protein Csa_000417 [Cucumis sativus][more]
KAG6605659.14.0e-1063.64hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035570.14.0e-1063.64hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cla97C01G005220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C01G005220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL549.2e-1375.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of Cla97C01G005220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G005220.2Cla97C01G005220.2mRNA