Cla97C01G001830 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G001830
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	30S ribosomal protein S6 alpha, chloroplastic
Location	Cla97Chr01: 1652550 .. 1655527 (-)
RNA-Seq Expression	Cla97C01G001830
Synteny	Cla97C01G001830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGATCGGAGTTGCTCCTGTGAACTCACTGGAGTTGGTGCGTGGTTTCACCGAAGTTGGTCATGTTGGAGAAGCTGTGTTCGTGTTGGAGAAGAAGGAAAAGAGAAGAAAGAAGAAAGAAATTGAAGGAAAGAGAAGAGGAAAAATAGAGATGTGATGAGGGTGTTATGGTTGTGTTAACCTAGTTGAGATAGTCAGGTGCATCTGCTGATTCCAAGTGTTAGCTCTTATTATTAATAGTTTCTTTGTAATTCAAGCATGTCTATTTTCATTCTACCAATGAGAAGTGTTGTTTCCGTTAAAAAAAATAAAGAAAGAAAAAAAGAAAGACGAGAAAAAAATAAATAAGGGCAACTTCTAAAATTGCTTGATGATAATGTAAGATGTCAAAACTCTTAAGTTTGAAAATAGGTCTTTTTAATCAATTATCTCCTATTTGGGTGGTGGGTTTTTACACTTTTACCGAAAATCAACGTAGTGTTTCCTTCCCTCTTGAATGTTTTATCATCCTGCACCAAGGTGTATACCCTCTTATCCATATCTACTTCCTTTCAACGATTCCACTATGCTATCTCCTTGTTGCCACTGAATTCCGAGCCTGCCCCAATAGCAGAACTCATTCGAATTAACATGGCCTTCACTTCCACCCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAACCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCATTCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAACTGAGGATGAACCGCCAGCCCCTCCAGGAACAGGATTCGCCGCCGCCCTCGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTCTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCCTTCACCGAGAAATACGAAGAGGTAGTATCATCTCTGAAATGTTGCTACTGTACTGTTGCCTTTTCCCCCTTCTGTTATTTCTCTTTGGTTTCTGAGGAAAAGAGAGACCAAAGGACGACCGAAATTTGTTTAAACTAGTTACGTATCTGAGAGAGAGCATTCAGTTTGTTATTCTGTTTAAATTGGGTTTAGGATCACATACTCCCTGTGGCCTTCCTGAGAAACCACTTGCGAAGTAATGAGGTGGTAGATTGTCATTGTCTGAATTAGAACACATTATTCAAGTAATGGATAGCTCATGAAAACTTAGGCTGCAGTTTGTGCAAACCAGTAGCTTTTAAAAGTTAGAGTATGAGTTTTCCTGTATGCTCTGTTTGAGTGTTTGGTTCCCAAGAAGAGAGAACCTTTTGTCGTGTCAACCTTCTAAGTCCTCTGGAGACAATAGTGTTAAGAATTTCACATTGGAAGGATGGAAAAGATACATGAGCCACTCTTCCTGTTGCTAATGGACTTTGTGATACTCTATGTTTATCTAATATGGTATCCGAAGTCCAATCGAGTATTTGGTATAAAAGAAAAGATATGACCCAAGAACGAGTGAACCCAAAGAAGCACTATCTTAAAGGGACACATTGAGGATTACACGCTGGAAAGATAGGGAGATATATGCGTTACTTTTCTCATTGGCAATTTTGTTTTGAGATGTAACTTCATGTTCATCTAATAGGTAGTTAGGGATGAGATGGATTCTTTTATTTCTGTGAGGAAAGAGATCTTCAATTGAACTTTACGAATGTTTGACTATCAATAAACGCGAGTTTATGAACTCTAAGTTAGAAAGGCTGGGTTTGTATAACCTATATTTGATCTCGTATTACACAAATTAATCCATGAACCAACTTTTAGTGCTTGAAAAAATATAGTGGAATGTTAAACAACTTTGATGTGGAGGGGCACTAGCTGATCTGTTGTGAAGAGGACGGTGGCGGCATTGAGACCATTTTTTTTTTTTTTTTTTAAATCATTGAGACCATATTTATGAGAGAACATTCAAGAAAGGCAGGAAAGAGAGGAAAAATTACCATGCATTTTTTAAGGAAAAGTTGCCTGAATGGGCAATTTATTTCTTATAGGAACTGTTTGCTTGTTATATTCGCTACAAGTATGCACTCTTATCATGAAAACATTGAATGGAACACAGATTTTTTTTCCCTTTTGCTCCTTTTGCTTTTTCGACGTGTATGTATTGTCAATTGTGAGAAATTCTCCCCTTCCTTGATATAAGTCAAATTCTGGTTGTGTTGTAAAGTTTCGGACTGGGGATTTATATGCTGTAAGCATCAACTGATGATCTTAGTTGATCGAATGACTTTGGTCTTGACTAAAGTGTGACTTTTTCTTTGTCATTTATTAAGTGGTAATTTAGCTTTATATAAGCATATGATTCTTAGGTAAAGGGACAATCAAGTTAGTTTGGTTTTCTTTCAACATAGTGTTTGATAAGAATGGCCTGTTTTGCAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCTGAATCAATGGGAATTCTCGAGGCAACACTTCAAACAGATGATGATGTCGTTCGATCAATGAGTTTCAAGGTAAGAAAACGAAAATACTAAGTATGCCTTAGCCTAAATATCTTGGTCTTTCACATCATCTTTTGGACATTTTATTCAAAGCAATGGAAAAGATGTGTAGTTGCAATTTGTGCTTTTCCTTTTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGCCATTAAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTTCATCACAGCCTTCCAATGGAAGTGCTATTTGA

mRNA sequence

ATGGAGATGATCGGAGTTGCTCCTGTGAACTCACTGGAGTTGGTGCGTGGTTTCACCGAAGTTGGTCATGTGTATACCCTCTTATCCATATCTACTTCCTTTCAACGATTCCACTATGCTATCTCCTTGTTGCCACTGAATTCCGAGCCTGCCCCAATAGCAGAACTCATTCGAATTAACATGGCCTTCACTTCCACCCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAACCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCATTCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAACTGAGGATGAACCGCCAGCCCCTCCAGGAACAGGATTCGCCGCCGCCCTCGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTCTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCCTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCTGAATCAATGGGAATTCTCGAGGCAACACTTCAAACAGATGATGATGTCGTTCGATCAATGAGTTTCAAGCCTTCCAATGGAAGTGCTATTTGA

Coding sequence (CDS)

ATGGAGATGATCGGAGTTGCTCCTGTGAACTCACTGGAGTTGGTGCGTGGTTTCACCGAAGTTGGTCATGTGTATACCCTCTTATCCATATCTACTTCCTTTCAACGATTCCACTATGCTATCTCCTTGTTGCCACTGAATTCCGAGCCTGCCCCAATAGCAGAACTCATTCGAATTAACATGGCCTTCACTTCCACCCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAACCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAAACCATTCAAATCCCTCTTTTCTCCCGACGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAACTGAGGATGAACCGCCAGCCCCTCCAGGAACAGGATTCGCCGCCGCCCTCGAAGATAAGGAGGAGCCTCAGTGTCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTCTGAGGCCTGACATGTCTGAAGACGAGAGACTCGCCTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCCATGTATGTTGAAGTATTCCACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCTGAATCAATGGGAATTCTCGAGGCAACACTTCAAACAGATGATGATGTCGTTCGATCAATGAGTTTCAAGCCTTCCAATGGAAGTGCTATTTGA

Protein sequence

MEMIGVAPVNSLELVRGFTEVGHVYTLLSISTSFQRFHYAISLLPLNSEPAPIAELIRINMAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKAQTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMGILEATLQTDDDVVRSMSFKPSNGSAI

Homology

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BLAST of Cla97C01G001830 vs. NCBI nr
Match: XP_038906485.1 (30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida])

HSP 1 Score: 400.6 bits (1028), Expect = 1.1e-107
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSKPLSLPPFTHQ+SFPFTLKPFKSLFSPDGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQVSFPFTLKPFKSLFSPDGIGPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESMGILEATLQ DD+VVRSMSFK
Sbjct: 181 PESMGILEATLQADDNVVRSMSFK 204

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BLAST of Cla97C01G001830 vs. NCBI nr
Match: XP_016898885.1 (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042673.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa] >TYK06076.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 4.1e-99
Identity = 189/204 (92.65%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK  K LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESM +LEATLQ DDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

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BLAST of Cla97C01G001830 vs. NCBI nr
Match: XP_023534494.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 6.6e-97
Identity = 183/204 (89.71%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+  KSLFSPDGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFF+GG GTEDEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESMG+LEA LQ DDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. NCBI nr
Match: XP_022958683.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucurbita moschata])

HSP 1 Score: 362.1 bits (928), Expect = 4.3e-96
Identity = 182/204 (89.22%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+  KSLFSPDGI PALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFF+GG GTEDEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESMG+LEA LQ DDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. NCBI nr
Match: XP_031741227.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 4.3e-96
Identity = 185/204 (90.69%), Postives = 192/204 (94.12%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK  K LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESM +LEATLQ DDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot
Match: Q8VY91 (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.1e-61
Identity = 127/206 (61.65%), Postives = 152/206 (73.79%), Query Frame = 0


Query: 64  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKPFKSLFSP--DGIGPALGLGLSV 123
           +S   + S+  PL   SS+PL        +SF  +L+PF S   P    I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 124 KAQTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 183
           K+Q L+FSG+FFEGG G++D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 184 EDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYF 243
           EDERL  T+KYEELLVAGG MYVEVF++G+IPLAYSI+KKNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

Query: 244 TKPESMGILEATLQTDDDVVRSMSFK 265
           TKPES+  LE  L  DDD++RS SFK
Sbjct: 183 TKPESIVPLETVLTADDDIIRSSSFK 200

[Close]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot
Match: P82403 (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-59
Identity = 131/205 (63.90%), Postives = 149/205 (72.68%), Query Frame = 0


Query: 62  AFTSTLTATSSTSPLSSKPL-SLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 121
           + TSTL ++S T+ L S P   L P T  I+F   L PF     P         G  VKA
Sbjct: 5   SLTSTLPSSSPTTSLHSIPKPKLKPST--INFTHNLNPFNPNLKPSRHHYLSNYGPYVKA 64

Query: 122 QTLEFSGSFFEGGLGTEDE-PPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSE 181
             L+FSGSFFEGG G  DE PP+ P  G   A+E+K EPQCPPGLR+YETM VLRPDM+E
Sbjct: 65  IALDFSGSFFEGGFGGLDEDPPSTPPAGL--AVEEKPEPQCPPGLRQYETMAVLRPDMTE 124

Query: 182 DERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFT 241
           DERL  T+KYEELLVAGGAMYVEVF++G+IPLAYSIK+KNKAGETN YLDGI LLFTYFT
Sbjct: 125 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 184

Query: 242 KPESMGILEATLQTDDDVVRSMSFK 265
           KPES+  LEA L TDDDV+RS SFK
Sbjct: 185 KPESISPLEAALVTDDDVIRSSSFK 205

[Close]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot
Match: Q10XV0 (30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rpsF PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 167 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNT 226
           YETM +LRPDM+E++      KY+ +L   GA  +++ H+G + LAY         E N 
Sbjct: 6   YETMYILRPDMTEEKVEQAITKYKSMLEEQGAYDIKIQHRGKLRLAY---------EINN 65

Query: 227 YLDGINLLFTYFTKPESMGILEATLQTDDDVVRSMSFK 265
             +GI +   Y   P  + ILE  ++  ++V+R ++ K
Sbjct: 66  QREGIYIQMNYQGPPTQIAILERAMRLSEEVIRYLTVK 94

[Close]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot
Match: Q3MBE2 (30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsF PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.9e-08
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 167 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNT 226
           YET+ +LRPD+++++      KY+ LL   GA  +EV ++G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 64

Query: 227 YLDGINLLFTYFTKPESMGILEATLQTDDDVVRSMSFK 265
             DG  + F Y    +++ ILE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

[Close]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot
Match: Q8YMX2 (30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsF PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 167 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNT 226
           YET+ +LRPD+++++      KY+ LL   GA  +EV ++G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 64

Query: 227 YLDGINLLFTYFTKPESMGILEATLQTDDDVVRSMSFK 265
             DG  + F Y    +++ ILE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

[Close]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL
Match: A0A5D3C6V7 (30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001770 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 2.0e-99
Identity = 189/204 (92.65%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK  K LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESM +LEATLQ DDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL
Match: A0A1S4DT54 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990347 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 2.0e-99
Identity = 189/204 (92.65%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK  K LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESM +LEATLQ DDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL
Match: A0A0A0KK24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 2.1e-96
Identity = 185/204 (90.69%), Postives = 192/204 (94.12%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK  K LFSP GIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESM +LEATLQ DDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL
Match: A0A6J1H3R6 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459837 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 2.1e-96
Identity = 182/204 (89.22%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+  KSLFSPDGI PALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFF+GG GTEDEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESMG+LEA LQ DDDVVRSMSFK
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL
Match: A0A6J1K3V4 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491447 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 6.0e-96
Identity = 182/204 (89.22%), Postives = 189/204 (92.65%), Query Frame = 0


Query: 61  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPFKSLFSPDGIGPALGLGLSVKA 120
           MAFTSTLTATSS SPLSSKP SLP FT  ISFPFTL+  KSLFSPDGIGPALGLGLSVKA
Sbjct: 1   MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 121 QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 180
           QTLEFSGSFF+GG GTEDEPP  PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 181 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 240
           ERLA T+KYEELLVAGG MYVEVFHKG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 241 PESMGILEATLQTDDDVVRSMSFK 265
           PESMGILEATLQ DDDVVRSMSFK
Sbjct: 181 PESMGILEATLQADDDVVRSMSFK 204

[Close]

BLAST of Cla97C01G001830 vs. TAIR 10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-62
Identity = 127/206 (61.65%), Postives = 152/206 (73.79%), Query Frame = 0


Query: 64  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKPFKSLFSP--DGIGPALGLGLSV 123
           +S   + S+  PL   SS+PL        +SF  +L+PF S   P    I    G    V
Sbjct: 3   SSLCVSNSTICPLPNVSSQPL--------LSFSHSLRPFISKSKPMCASIQKRDGSQFVV 62

Query: 124 KAQTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMS 183
           K+Q L+FSG+FFEGG G++D+P +P G+G + ALEDK EPQCPPGLR+YETM VLRPDMS
Sbjct: 63  KSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 122

Query: 184 EDERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYF 243
           EDERL  T+KYEELLVAGG MYVEVF++G+IPLAYSI+KKNKAGETNTYLDGI LLFTYF
Sbjct: 123 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 182

Query: 244 TKPESMGILEATLQTDDDVVRSMSFK 265
           TKPES+  LE  L  DDD++RS SFK
Sbjct: 183 TKPESIVPLETVLTADDDIIRSSSFK 200

The following BLAST results are available for this feature:

BLAST of Cla97C01G001830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906485.1	1.1e-107	98.53	30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]	[more]
XP_016898885.1	4.1e-99	92.65	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042...	[more]
XP_023534494.1	6.6e-97	89.71	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958683.1	4.3e-96	89.22	30S ribosomal protein S6 alpha, chloroplastic [Cucurbita moschata]	[more]
XP_031741227.1	4.3e-96	90.69	30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]	[more]

BLAST of Cla97C01G001830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY91	2.1e-61	61.65	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
P82403	1.1e-59	63.90	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q10XV0	3.5e-08	32.65	30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 G...	[more]
Q3MBE2	5.9e-08	32.65	30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YMX2	1.0e-07	32.65	30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of Cla97C01G001830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6V7	2.0e-99	92.65	30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DT54	2.0e-99	92.65	30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KK24	2.1e-96	90.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1	[more]
A0A6J1H3R6	2.1e-96	89.22	30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K3V4	6.0e-96	89.22	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Cla97C01G001830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64510.1	1.5e-62	61.65	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 166..264 e-value: 2.9E-15 score: 56.3
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 84..264
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 164..269 e-value: 3.2E-15 score: 57.8
None	No IPR available	PANTHER	PTHR21011:SF15	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 84..264
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 164..264 e-value: 1.31676E-34 score: 118.465
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 164..267 score: 13.511889
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 164..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G001830.2	Cla97C01G001830.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome