Cla97C01G001088 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G001088
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
LocationCla97Chr01: 826288 .. 829161 (+)
RNA-Seq ExpressionCla97C01G001088
SyntenyCla97C01G001088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGAGTTTAGAAGGGTTTTTGCCAAAACAAAGAGTTTTGCAAAAGGGAGAGGAAATGTATACCTTTTTAAAGGTTTAATTTAAATATTAAGTTATTTTGAAAAAAAAAAATAGTTGATTTAATAACCACTCAAAATTGAATTTAAAAGTTAATAGTGTATTTTAAACTGAATTGTTTAAATAAAAATGAATTTTTTAAAAATATTTATTTTTTAAATTAATCCAAACAAACTTTTAGACAGTAAAAATGTGTTTTTGGGTATGATGGTTTTGTGCGGATACTCAAATTGTGGGAAAAAAATGAGATATGTTTTGTTCTTTTTCTTACATATACCTTTTGCTAAGTGAAATTATTAAAAGAGAACTCTGGTGCACTTTTGGATTGGCTCTCTTACTCTCTTGTCTTTCTTTTCATACATAGCTCTCCTCTTTCCTTTTGTTTTCTAGTGCTTGATCTCGCTCTTTATGTTGGGTCTCGCTCTGCAATACAACAAAAAAGAAGGAGAGAAGAAGTCAAACAAAGAAGAAACACGTTGACTCATCAGAGCTGGTCATCTCGTAGAAGCTCGTCGCATGGTCTTGCCCGAGAAGAAAACCAAAACGAGAGGGAAAGTGAGAAAAGAAGAAGGAAGGAAAGAGGAAGAAATTGCAAGGAAGAGGGAAAAACTAAGGGTAATTTTATAAAGTTGCTTGACTAAAATGTAAGCAAAATGTCAAAACTATTAAGTTTTAAAAAATGGGGTTGTACATATCCTAACAATTTTCTAATAAATAAATAAATAAGTAAGAATTGTTATGGTTAAGTTAAGTCACTTTATCAAGAAAAAAGAATTATATATTTAGATTGTTGTATCCTTGAAAACTTCAAACTAATAATTAGATCCATAAAAGTTAAAATGAAACTAGCTCAGTGATAATAGTATGTAGAGATGTCAATTTAAAACTTTTAAAGTTCAAGGAAAAAGGTCATGTTAAATATCGTTGAGCTAAGTTCACTTTGACTAAAAATTACTTCTTTAAACATATAATAGGGAAAACAAATCATTGTAGTTGGTTGAAATTATTATTTAAAAATAATGAAAAATAATTACACGAAACCCATTCCCTACGAATATTTCATGGGAAAATATTTGCTTCTCCCTCCAAATTTAAATGAGGAATTTCATGGAGACGAAGGTTTAAATGGGGACGAGGAGTAGAATGTCGTTCACTGACCCCATGCTATCCAATGAACATCTCTAATTGCATTTACTCCTTTTCTCGAGATTGTATGTTCACATCGCCACTACCTCATTTGTTGTACTCCAGAGAGATATGCAAAAAACAATACATGAAATGCATAAATCGTACTAACTTCAAATTCTAAATTTTGAATCAATTTAGACTTTCCATTAAGGTTCCATTTTAAAATCGTTAATGCACAATTTTCACATGTACATGACTTCTTCAAGTGTAACGAAGATGGAAATTGACGATTAGCTAATGTCCATAAATTGTAATCATTATTTATGAATATTTTCACAATAACTAATGTGTAAATGTTTGTTATGTAAATGAATTTAAGATGTCTTTTGAGGTTAAATAAATGGTAACAACAATTTTAATCTTTTATCAATGTATTTGGATGGACTTTTCAAATGTTTAATTTTGAAAAACGAGTCATTTTAGCAAAATTTGTAATGTTTGGCAACCACTAACTTTTAAAGTCTGAGTATGAAATTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGAAACACTTGATATTAAATTTTCCCTTTAAAATTTTCACATATATGAGAAGGACTAAAATACTCTTACACTATCCCTCCCAAGTTTCTCCACCTTGACATTCACCATGACTACTGTTTGGCGACCACCATCACCCATCAAAGACCATCGACTTCACTCCACTAGCGTCTTTGTCGACCACTAGTAAGAAGAGAATATGAAAGAAAATACTTACTTGAAGACACATACGGTGTTTATTAATAGTCAATTTTTTAGAGTGATTTGACGTTTGTAGAAACATTTTGAGAGTAGAACGAATCAAACAAAATCATATATAAAAATACTTTTAAAGAAAATATAATCAAATACAACAGCGTTTTAACCTTAAAAAACTTTTATAAAAACAAAAGGTTTGAAAGAAAATGCATTCTTTAAACATTTGTTTAGGCATATTCAAGGATAACCTATATTGTTGTATAAGTAGAATGACATAGTCAACTTTCATCATTTACTTTTATACATATATTTTTAAAAAGTAGTAATAAATATGTGCTACGCGCATCAAATATTGAGGTTTAAATTTGATGTGTAAATGTAGTATTTAATTTAATGAAAGTTTTATGTATGTAATAAATATAATTTTTAAACTTAGTTTTACACTCTTATCATTGTAAACTTTTAAAAATAGTTAAACAAATTATTAAAATAACTTAAAAGTATAATTAATTTAATGTCTTTATATTTACTTTTAGTTCGTTTATCTTAAATTTTTATGTCTCATAGTTCTAACTTTTTCCTTTACAAGAAAATGTCTTTAACTTTTTACTCTATAAAATTTGCTCCTAATTGTTATTTCGATTCTTTTATATTCTCTCAACATTTTTAGCTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

mRNA sequence

ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

Coding sequence (CDS)

ATGGCGGTGAAGGAGAGAGAAACGACAAGAAACGACGGCGAGAAACGGCGGCGAGCGGTGGCGACGACGACAGAGGTAGCTCTGGGAATGGAAAGAGGCGGCATGAACGCTGGCGTGATGAGAGACGAGACTAGTTTTGGCATGTTGGGAAATATCATTATTGTCGAACCCAATGTCTACATCGCATTTGCAAGTAAAAGAGTAATTAAACAAACATTGTATAAGACAATCCCTTAA

Protein sequence

MAVKERETTRNDGEKRRRAVATTTEVALGMERGGMNAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP
Homology
[Close]
BLAST of Cla97C01G001088 vs. NCBI nr
Match: KAG4152134.1 (hypothetical protein ERO13_D04G104048v2 [Gossypium hirsutum])

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 44 TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          TSFGMLG+III EPN YIAFASKRVI+QTL KTIP
Sbjct: 33 TSFGMLGDIIIAEPNAYIAFASKRVIEQTLNKTIP 67

[Close]
BLAST of Cla97C01G001088 vs. NCBI nr
Match: PNT36821.1 (hypothetical protein POPTR_005G150200 [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 44 TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          TSFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 61 TSFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 95

[Close]
BLAST of Cla97C01G001088 vs. NCBI nr
Match: KMS93670.1 (hypothetical protein BVRB_029130, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 44  TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           TSFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 122 TSFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 156

[Close]
BLAST of Cla97C01G001088 vs. NCBI nr
Match: KYP48951.1 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Cajanus cajan])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 36 NAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          N GV    TSFGMLG+III EPN YIAFA KRVIKQTL K +P
Sbjct: 28 NGGV---TTSFGMLGDIIIAEPNAYIAFAGKRVIKQTLNKAVP 67

[Close]
BLAST of Cla97C01G001088 vs. NCBI nr
Match: YP_009669661.1 (acetyl-CoA carboxylase subunit beta [Qualea grandiflora] >QCW94945.1 acetyl-CoA carboxylase subunit beta [Qualea grandiflora])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 413 SFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 446

[Close]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match: A0ZZ44 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=accD PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 418 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTIP 451

[Close]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match: Q2L915 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=accD PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 418 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTIP 451

[Close]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match: A6MMV3 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Illicium oligandrum OX=145286 GN=accD PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KTIP
Sbjct: 400 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLKKTIP 433

[Close]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match: Q8S8W7 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Atropa belladonna OX=33113 GN=accD PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-08
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 406 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 439

[Close]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match: A6MM45 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=accD PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-08
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 410 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 443

[Close]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match: A0A2K2AH08 (CoA carboxyltransferase N-terminal domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G150200 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 44 TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          TSFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 61 TSFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 95

[Close]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match: A0A0J8DSG0 (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_029130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.3e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 44  TSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           TSFGMLG+III EPN YIAFA KRVI+QTL KT+P
Sbjct: 122 TSFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVP 156

[Close]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match: A0A151S2B0 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cajanus cajan OX=3821 GN=KK1_029353 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.2e-06
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 36 NAGVMRDETSFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
          N GV    TSFGMLG+III EPN YIAFA KRVIKQTL K +P
Sbjct: 28 NGGV---TTSFGMLGDIIIAEPNAYIAFAGKRVIKQTLNKAVP 67

[Close]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match: A0A186L6T0 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Spathiphyllum kochii OX=1662495 GN=accD PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+IIIVEPN YIAFA KRVI+QTL KT+P
Sbjct: 413 SFGMLGDIIIVEPNAYIAFAGKRVIEQTLNKTVP 446

[Close]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match: A0A4Y5RU03 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cornus officinalis OX=16906 GN=accD PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EPN YIAFA KRVI+QTL+KT+P
Sbjct: 427 SFGMLGDIIIAEPNAYIAFAGKRVIEQTLHKTVP 460

[Close]
BLAST of Cla97C01G001088 vs. TAIR 10
Match: ATCG00500.1 (acetyl-CoA carboxylase carboxyl transferase subunit beta )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 45  SFGMLGNIIIVEPNVYIAFASKRVIKQTLYKTIP 79
           SFGMLG+III EP  YIAFA KRVI+QTL K +P
Sbjct: 412 SFGMLGDIIIAEPYAYIAFAGKRVIEQTLKKAVP 445

The following BLAST results are available for this feature:
BLAST of Cla97C01G001088 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG4152134.13.4e-0685.71hypothetical protein ERO13_D04G104048v2 [Gossypium hirsutum][more]
PNT36821.14.5e-0682.86hypothetical protein POPTR_005G150200 [Populus trichocarpa][more]
KMS93670.11.3e-0580.00hypothetical protein BVRB_029130, partial [Beta vulgaris subsp. vulgaris][more]
KYP48951.11.7e-0572.09Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Cajanus cajan][more]
YP_009669661.12.2e-0582.35acetyl-CoA carboxylase subunit beta [Qualea grandiflora] >QCW94945.1 acetyl-CoA ... [more]
BLAST of Cla97C01G001088 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0ZZ446.5e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q2L9156.5e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A6MMV36.5e-0882.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q8S8W78.5e-0879.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A6MM458.5e-0879.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
BLAST of Cla97C01G001088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2K2AH082.2e-0682.86CoA carboxyltransferase N-terminal domain-containing protein OS=Populus trichoca... [more]
A0A0J8DSG06.3e-0680.00CoA carboxyltransferase N-terminal domain-containing protein (Fragment) OS=Beta ... [more]
A0A151S2B08.2e-0672.09Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Cajanus cajan... [more]
A0A186L6T01.1e-0582.35Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A4Y5RU031.1e-0579.41Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
BLAST of Cla97C01G001088 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00500.11.9e-0773.53acetyl-CoA carboxylase carboxyl transferase subunit beta [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.226.10coord: 23..78
e-value: 4.0E-6
score: 28.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G001088.1Cla97C01G001088.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:2001295 malonyl-CoA biosynthetic process
cellular_component GO:0009317 acetyl-CoA carboxylase complex
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003989 acetyl-CoA carboxylase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016743 carboxyl- or carbamoyltransferase activity
molecular_function GO:0008270 zinc ion binding