Cla97C01G000135 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G000135
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionnipped-B-like protein B isoform X3
LocationCla97Chr01: 92770 .. 93251 (-)
RNA-Seq ExpressionCla97C01G000135
SyntenyCla97C01G000135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCACGGCCGCTGCTCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGAGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGATGAGGTAGGGCTTTCCTCATTTTTAAGGGTTTCTTGCATTGCCTTCTTTTTTTGTTTCTGCACAAATCGGGATACATGGAAAGCAACGTACCTGTAGCTCCTGACTTCTCTTTTTCTATCTCTTGCCTTGGGCAGTTGGGCTTATATTTCACATAACGAATTATACAAGGAGAGGAACGCGCCTCTTGCTTATCTTAATATCTTATCTTATTGCTGGTTCTGTTAATTATTCTTACTGATAATATATATATTCTTCTTTGTTGCCTCGCATATCATCATAGTTTTTCTTTCGTGTTTTGAATTTACCTTATTGTCTGGTCTGGAAGTAGCACACTAGTTATGCGTCTTGTCTTGCTTCCTGCTTGGTAA

mRNA sequence

ATGGAAGCCACGGCCGCTGCTCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGAGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGATGAGGTAGGGCTTTCCTCATTTTTAAGGGTTTCTTGCATTGCCTTCTTTTTTTGTTTCTGCACAAATCGGGATACATGGAAAGCAACTAGCACACTAGTTATGCGTCTTGTCTTGCTTCCTGCTTGGTAA

Coding sequence (CDS)

ATGGAAGCCACGGCCGCTGCTCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGAGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGATGAGGTAGGGCTTTCCTCATTTTTAAGGGTTTCTTGCATTGCCTTCTTTTTTTGTTTCTGCACAAATCGGGATACATGGAAAGCAACTAGCACACTAGTTATGCGTCTTGTCTTGCTTCCTGCTTGGTAA

Protein sequence

MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADEVGLSSFLRVSCIAFFFCFCTNRDTWKATSTLVMRLVLLPAW
Homology
[Close]
BLAST of Cla97C01G000135 vs. NCBI nr
Match: XP_011654569.1 (uncharacterized protein LOC101218478 isoform X1 [Cucumis sativus] >KAE8647792.1 hypothetical protein Csa_000261 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. NCBI nr
Match: XP_011654570.1 (uncharacterized protein LOC101218478 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. NCBI nr
Match: XP_011654571.1 (uncharacterized protein LOC101218478 isoform X3 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. NCBI nr
Match: XP_038874311.1 (uncharacterized protein LOC120067016 isoform X4 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 8.1e-11
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATA ARGASLTMHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATATARGASLTMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. NCBI nr
Match: XP_023550405.1 (nipped-B-like protein B isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 8.1e-11
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASL+MHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match: A0A0A0KLR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138460 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match: A0A1S4DSX0 (uncharacterized protein LOC103483009 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483009 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASLTMHSPQLSRQEWRAVADNHSARD ADE
Sbjct: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDTADE 39

[Close]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match: A0A6J1I9Z7 (nipped-B-like protein B isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472963 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASL+MHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match: A0A6J1IB18 (nipped-B-like protein B isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472963 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASL+MHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADE 39

[Close]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match: A0A6J1IFW6 (nipped-B-like protein B isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472963 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 1  MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADE 40
          MEATAAARGASL+MHSPQLSRQEWRAVADNHSARDAADE
Sbjct: 1  MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADE 39

The following BLAST results are available for this feature:
BLAST of Cla97C01G000135 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654569.12.8e-11100.00uncharacterized protein LOC101218478 isoform X1 [Cucumis sativus] >KAE8647792.1 ... [more]
XP_011654570.12.8e-11100.00uncharacterized protein LOC101218478 isoform X2 [Cucumis sativus][more]
XP_011654571.12.8e-11100.00uncharacterized protein LOC101218478 isoform X3 [Cucumis sativus][more]
XP_038874311.18.1e-1197.44uncharacterized protein LOC120067016 isoform X4 [Benincasa hispida][more]
XP_023550405.18.1e-1197.44nipped-B-like protein B isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C01G000135 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLR31.3e-11100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138460 PE=4 SV=1[more]
A0A1S4DSX03.9e-1197.44uncharacterized protein LOC103483009 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1I9Z73.9e-1197.44nipped-B-like protein B isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472963 P... [more]
A0A6J1IB183.9e-1197.44nipped-B-like protein B isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472963 P... [more]
A0A6J1IFW63.9e-1197.44nipped-B-like protein B isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472963 P... [more]
BLAST of Cla97C01G000135 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G000135.1Cla97C01G000135.1mRNA