ClCG11G018780 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G018780
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	High mobility group B protein 2
Location	CG_Chr11: 31936968 .. 31941090 (+)
RNA-Seq Expression	ClCG11G018780
Synteny	ClCG11G018780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCGAACTAATGTAAGTTTAAGAAAATATGGCGAATAAAACACAATATATTATAAAACAACCTAAATCGTGCATGAACGATTCTGCTGGTTGAATGTATTAGACAATACATCATAGTATATATAAAATATATAAGCAATACAATTAGCAACATTCGATTTACATATATTAAAATAATGTAAAATTATGCAACAAATATAGCACAAGAATTTGACGAACAAAACCAACCACAAATCGAAGCAATTGAAAAACTAAATAAAAAATGGAGATGAAAAACTTGTATGTTGGTGAACAAAAAATAACCCATCATCTGATGCAAAAAACCCAAAAAGAAATTAAATTACGAACATCACAAATGGAAACCTTAATCGTAACCACTACAGCAACCATATTAGTTGATGAATACCATAAGAAAAATGCAATATTAATTATGATATATATTATAATTAATGATTATTAAAAAAAACTATAAATAACTAATATTAAATTGGTTTGATTTTTTATTAATGTTAAATGATAGACAAAATTGAAAATTTAATACGGGAGAGAATGTATGATAAAGTCAAAATAGTTTCAAATTTGAAATGTAGTCATAGAATATAATTAAGTTTAGATCATCTATAAAATATTGGCAGTAAATTAGGTTAAATATATAAGGGATAACAACATAAAATGCCCCAAGAAAGGTATTATATTTTAATTATGTCTAGTTTTACATTTTTTTTCAAAAATGTCTACATGAACTTATTTATTACACAAAAGTTAGAGTATAATTACTATTTAGTCCCATCCCACAATTAATTACGAATTTTTTTAGAACACCAAATCGAAGTTTTTTTTTTAGTGGGAACTCAAACGTTTCTTTAATTCATGTGCAAAATTAATAATTATTTTTTTTCCATAACAATCACTCTCTCCTTTAGACTTCGACGATTTCACACCTCCTACCCACCTTAATTTCTCCCTATCTCCCTCCGCACCATTTCATACCCCTTTGCCGCCGCCACTCGCCCATCGAAACTGGTTGCTCGTCCACCATCGTCCAAAGCAACGCGCCGTTGGTCTGTTGGAATCGGTCGCACACCGTTCGTAGTTTCATCAACGTTCATCCGTCAGAATCGGTCATGCATCATTCATCCTCGTTCAGCCAGCCATTTTCCATAATTGTCGACTTTCGCACGCCATCGATCACCCAAGGTAAGCCACCAGTCGCCTTCTCATTATTTCCTCTCTCCTATTTGCAGATTGCCTCTCTTTGTTCATGTCGTCGCACCAAGATCCAACCTCCCATTCAGATCCGTGTAGATCAAATCAAATCCGTTGCCCCCAGTCCACATCCGTGGATATCTGGCATCCCAATCTCCGACAACCCGATATGTACTATAGTATTAATATTTATGATAGAATTTAGGTTTATAATTGTGAATGTGAGATTTCGAATATAAACATGCTTTGTAATTGACGGTTTATTTTGAAAATGGTGAATTTGTATATAATATATACTGTGGTATATTGTATATATTTTCAATGACGTGGAATTTCTGCAAAATTATTAGCATCTAATATATGATATATAGAGTGAGTTATCTAAAATAATATTCATATATTGTACTTTTACATTAATACAAAATTCGAATTGTACAACCAGTTATTTGAGTATATTTCAAATATATTTACCTCTATATTTTATATATTGGTTAGGATATTTGCAAAATCTAATACAATGTTCGAAGGTATATTTAAAAATAACTATGAATACGCTAGAAAATTCAACAACTTGCGTGAAAAATTGTGGTATTTGAGTACATATCAAACATATTTATCATAATATATCATATATTGGGTAGAACATTACAAACATATAATATAATACAATGTCTTACAGTACATTCAATATACTTAAATATATTACAGTCATGTGGATACTGTTATTGTCATGTGGATACTGTTATTGTTTTTTGTTGAGTGAGTGAAGCAAGAAGTTGTAATTTTGTTAAAAATGGATGAAAAAATTCTTACAATAAATCACCAAATTTAAAGTCAATAAATGTAAACTAATTAAAGAAATAAAACAAAAAATCGATAAAATATTATATTAATAATATACAATATTATAATGGTCGAAATTTCTATATAAATATTTATTGCACCATTTATATGTTTTGAAGGCTTAAATGAAAGGCCCAATATTGGAAAAGACACCTCCAATTTGGGCTTACTGGATTTCAAATTGGGTTTATTTTTCATATTTGGATGTTATTATAAAGGCCCAAATTTGAAGAGACGGGCTTTGGAAGATGCTGTTTCCCCCGCGGGGGACGGGAATCGCACCGCGAAGCCAACGAATGTTAGGAGAGAAAACACAAAGAGGCGGAGAGATGGGGAAGGAGGGAATTATGTAATGACGTGGACCAATGAAATAGTAGTGCGCAGATTATTGAGCTGGCAATAAATTTAGAATCCCGCCTAAATCCCTGCTTTCATTTCGTGCGCAATTGAATTTCAATTTGCCCTCCTTAGACGAGACTTAATTAATTATCCCTTTTTACTCTCACAGCTCCTTCTCCTCCTACCCCTTCCTTCTTTCTCTCTCACACGCACCTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTAACCCAACCTCCTCCCGTCGGTACGTTTCATCGATCTCCTCCGTCTTTTCGACTAATTTCTCGCAATTTTGCGTCTTTTGTTTGTTTCCCCTCCAAATTGTTGCTGATCCGATCGTATACTGCAGGATTCGAAATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTTTTTTTCTTTTTTGTTTCTTCCGTGTTTTTTCTGTCGTATATGTTTATTTATTTATTTATTTATGGTTTTGATCGGCCCTAGATCTAAGAAGTTTCATTGTTTTGAATTACCTGTCAAAAAGTTAGGCGTTGACCTTTTTTTTTCCCTATCTTATTGATCGCTTTTGGTGAATTTTTCTTTTTTAAATTGTAGGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGTAATTTTTTTAATCTTTTGATTTGACGATCTGAATTATTCTTAGTTGTCTGCAAATTACGGGAGTTGGATGGTTGTAGAGTTGAGCAAAATGTATGCAAGTACAGAATAACGATATCCAAATTCATTAGAAATGCCTTTGGGAATTATAAGTGAAAGTTAAAACCGCTTGGCTTTCTACAAAAGAGATTCCTTTTGTTTTGTTGTGTCTATTTGGCTTATAGACCCCTGGTTTTTGCAGTAGTTTTCTTTATGTAAGCCGATTATCATCTAACTTCATTGTTGTTACGTTGTTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGTAAGCTATTTAGCTTCTTCCAAGTTGCTCTTTTAGTTTTTGTTTCCATTTCAATTTATATGACTCCTTTGAGGAAATGAGCGAAGTTATTGACTTACAAATTGATGCGATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGTACGTGATAGATATCATAGTATTTCTTATACTTCTCCTGGTATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGTACATACTCTTGGTAAAGTTCCTCTAGCATTTCAATTGCAGCTCTATTTTCTTATTTGAATTGAATTCTCATTCACTGTGTGAGTTCAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTTCAGGAGTTTAGTTAAACTAGTCATTAGAGAGCTAATGTTGTAGCTGTACGCTCATTTCATTTTCTTCCTTCTGATTTTGCAGGAGGACGATGACGAGTGA

mRNA sequence

ATGTACCGAACTAATACTTCGACGATTTCACACCTCCTACCCACCTTAATTTCTCCCTATCTCCCTCCGCACCATTTCATACCCCTTTGCCGCCGCCACTCGCCCATCGAAACTGGTTGCTCGTCCACCATCGTCCAAAGCAACGCGCCGTTGGTCTGTTGGAATCGGTCGCACACCGTTCGTAGTTTCATCAACGTTCATCCGTCAGAATCGGTCATGCATCATTCATCCTCGTTCAGCCAGCCATTTTCCATAATTGTCGACTTTCGCACGCCATCGATCACCCAAGGCCCAAATTTGAAGAGACGGGCTTTGGAAGATGCTGTTTCCCCCGCGGGGGACGGGAATCGCACCGCGAAGCCAACGAATGTTAGGAGAGAAAACACAAAGAGGCGGAGAGATGGGGAAGGAGGGAATTATGTAATGACCTCCTTCTCCTCCTACCCCTTCCTTCTTTCTCTCTCACACGCACCTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTAACCCAACCTCCTCCCGTCGGATTCGAAATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Coding sequence (CDS)

ATGTACCGAACTAATACTTCGACGATTTCACACCTCCTACCCACCTTAATTTCTCCCTATCTCCCTCCGCACCATTTCATACCCCTTTGCCGCCGCCACTCGCCCATCGAAACTGGTTGCTCGTCCACCATCGTCCAAAGCAACGCGCCGTTGGTCTGTTGGAATCGGTCGCACACCGTTCGTAGTTTCATCAACGTTCATCCGTCAGAATCGGTCATGCATCATTCATCCTCGTTCAGCCAGCCATTTTCCATAATTGTCGACTTTCGCACGCCATCGATCACCCAAGGCCCAAATTTGAAGAGACGGGCTTTGGAAGATGCTGTTTCCCCCGCGGGGGACGGGAATCGCACCGCGAAGCCAACGAATGTTAGGAGAGAAAACACAAAGAGGCGGAGAGATGGGGAAGGAGGGAATTATGTAATGACCTCCTTCTCCTCCTACCCCTTCCTTCTTTCTCTCTCACACGCACCTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTAACCCAACCTCCTCCCGTCGGATTCGAAATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Protein sequence

MYRTNTSTISHLLPTLISPYLPPHHFIPLCRRHSPIETGCSSTIVQSNAPLVCWNRSHTVRSFINVHPSESVMHHSSSFSQPFSIIVDFRTPSITQGPNLKRRALEDAVSPAGDGNRTAKPTNVRRENTKRRRDGEGGNYVMTSFSSYPFLLSLSHAPPLLPPSSNPKPNLTQPPPVGFEMKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE

Homology

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BLAST of ClCG11G018780 vs. NCBI nr
Match: KAG6591217.1 (DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 1.4e-64
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 172 TQPPPVGFEMKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVF 231
           TQ    GFEMKGGKSK+ESKKADTKLAVKKGAANAGKKGSKKA KDPNKPKRPASAFFVF
Sbjct: 217 TQLSSFGFEMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVF 276

Query: 232 MEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNK 291
           MEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNK
Sbjct: 277 MEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNK 336

Query: 292 KQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           KQASGANAAEEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 337 KQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE 374

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BLAST of ClCG11G018780 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-64
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK++SKKAD KLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 149

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BLAST of ClCG11G018780 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 3.4e-63
Identity = 145/149 (97.32%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

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BLAST of ClCG11G018780 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-62
Identity = 141/149 (94.63%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

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BLAST of ClCG11G018780 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-62
Identity = 140/149 (93.96%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

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BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.2e-48
Identity = 114/152 (75.00%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 240
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 241 KFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 300
            FN+E+P NKAVSAVGKAAG KWK+MSDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 301 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.6e-39
Identity = 98/149 (65.77%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSK E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EE+P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-38
Identity = 97/149 (65.10%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSKTE++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           +ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-37
Identity = 97/149 (65.10%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK    K+D KLAVKK AA+   K +KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADT--KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           E++PNNK+V+ VGKA G KWK ++ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EE+ES+KS SEVNDD++  +GS E+D ++
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-34
Identity = 96/158 (60.76%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 240
           MKG KSK  + KAD KLAVK   A    KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 241 NEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 300
            E+NP NK+V+AVGKAAG +WKS+S+++KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 301 A--------EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           A        +E+ES+KS SEVN DED +EGSEE++DD+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

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BLAST of ClCG11G018780 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 145/149 (97.32%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of ClCG11G018780 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.2e-63
Identity = 141/149 (94.63%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of ClCG11G018780 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 140/149 (93.96%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKADTKLAVKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

[Close]

BLAST of ClCG11G018780 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 139/149 (93.29%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKSK+ESKKAD KL+VKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           EEDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of ClCG11G018780 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 137/149 (91.95%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKGGKS         KLAVKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKS---------KLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 138

[Close]

BLAST of ClCG11G018780 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-40
Identity = 98/148 (66.22%), Postives = 121/148 (81.76%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSKTE++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           +ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDD 329
           E++ES+KS+SEVND++D ++GSEEEDDD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of ClCG11G018780 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-40
Identity = 98/149 (65.77%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSK E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EE+P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of ClCG11G018780 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 161.8 bits (408), Expect = 9.6e-40
Identity = 97/149 (65.10%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSKTE++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           +ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 330
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of ClCG11G018780 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-39
Identity = 96/147 (65.31%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSKTE++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           +ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEEEDD 328
           E++ES+KS+SEVND++D ++GSEE+DD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of ClCG11G018780 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-39
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 181 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 240
           MKG KSK E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 241 EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 300
           EE+P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 301 EEDESEKSMSEVNDDEDGDEGSEE 325
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

The following BLAST results are available for this feature:

BLAST of ClCG11G018780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591217.1	1.4e-64	92.41	DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_038896795.1	3.1e-64	95.97	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_008452973.1	3.4e-63	97.32	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_022936925.1	1.3e-62	94.63	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	2.9e-62	93.96	HMG1/2-like protein [Cucurbita maxima]	[more]

BLAST of ClCG11G018780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	3.2e-48	75.00	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	4.6e-39	65.77	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	1.3e-38	65.10	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40619	1.5e-37	65.10	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	5.9e-34	60.76	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of ClCG11G018780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW96	1.6e-63	97.32	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1FF34	6.2e-63	94.63	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1IF57	1.4e-62	93.96	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1CNM1	2.6e-61	93.29	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A5A7VCD7	5.1e-57	91.95	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of ClCG11G018780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.3	2.5e-40	66.22	high mobility group B2	[more]
AT1G20696.1	3.3e-40	65.77	high mobility group B3	[more]
AT1G20693.1	9.6e-40	65.10	high mobility group B2	[more]
AT1G20693.2	1.2e-39	65.31	high mobility group B2	[more]
AT1G20696.3	2.1e-39	65.97	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 272..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..140
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 181..328
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 221..287 e-value: 4.53826E-22 score: 86.1425
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 220..291 e-value: 2.9E-26 score: 103.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 221..290 e-value: 3.4E-23 score: 81.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 221..290 score: 20.588604
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 204..307 e-value: 7.4E-26 score: 92.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 208..294
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 181..328

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G018780.2	ClCG11G018780.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin