ClCG11G017320 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G017320
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTransmembrane protein
LocationCG_Chr11: 30578005 .. 30580681 (-)
RNA-Seq ExpressionClCG11G017320
SyntenyClCG11G017320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAATTAAACTAAATCAATATTAAAATTAAAATGTTTTATTACCAATTTCCGTGAGTCAAAAACCTATTCCGAAGTTTTCATGTTCATCCTGAAAATAAGAACGTCGTTTTTTCCCCTAATTTTGCGAAGTTGAAATTTCTAAAATTTTGACCTTTCCATTTTCCTATACACAAAGATCGCTGGGTTACGGCGAACGGCTGAAGGAAGAAGCTAATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGCTCTCCGTTTCCTCTATTTCGCCAGCGCCGGATGTAATTTCTTCGATTCATCTCTTTCATTCTCTGTCTTCGATTCCGTGTTCTCCTATTCATTAATCATTCGATTCGTTTATGTTGATCAGTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAACGCAATTCGCTGTTGAAACAACAGCAGAAGCAGCGGTCGAATCATCAATTATCGGAAGCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGATTACAGGTTAGTTTGTTATATTCTGGAATTTCTCAGGTTAGATCGCCATTTCGATGTTAGGATAATGGTGTTGGATTCATAATTTATCATCCTGTGATTATAACTATGGGGTGAGGTCTGTCTCTTCCCTACGGATCACAACTCTGCTCATTTTCTGTAGCGATAATGGAAGGGGAAACCCCTTCTGAGGATGTAGCTTTATCAACTATCACCTATAAGAAGAGAAAAGTGTAGTGATTACACTAATTGATTGCAAACATATTGAAAGTGTCGTTGATGACTGTGAGGGGAAAACAAGGGGAAAACAAAGGGACCCCTTTGAGATTAGAATTGTAAAGAAAAAGTAAGTGGGGCGTAACCAAAATAGAATGGATAAAAATGGTTACTTATCTAGTTATTTGACTTCTGTCTTATGCATTGTGATTGAGGTGTGCAACATGTGTTGTCTTTTGTGATACAATAGAGAGAAGGGAAACCCCAACATCTTGAGAAAGAGAATAAGCTCACACCCTTGCACGCTGAGGACTAATATTTCATATATATAGCTAGGTTGAAGTGGTTGCAAGAGAGTTGTACATAAAGACTACAGAAATAAATAATAAACCAAATACAGAACATTGAAACAGAAAATAACAAGGGCTTAATTGATAATGTAGTCTGGCTAACATATTTACAATATGCCATGCATATTGGCACCTTGAATTGTGGGATTCTGGCCCCTATAACGAGTGGTTCGGGATTGTATCTGTTGTTGACTTAAAAATGCTGTTGTAATTACACAACCAAGGGCAGTGCAGCATGATAAGCATGTTCGTTTATGCAGACTGTGCTAGTACTCGTAGTAAGTTTTTCTCTATTTTGTTCTTAATTTCTTTCTTTATAATATTGAGATGAGCCAAAGAGGATATTATTTGAAAGAAAAAAATTAGTTGGAGTAATTAACGTAAGAATACAGTAGAAGTTATTGACTTTCTAGCTTGGTAAATGTGGGATTTTTCTTTTGTGTAAGAGATGGGGCAAGTCTTGGACTTCTAGTTCATTCATTTGATGTATACCCCTTGGATTGAAATACCGTATTGTCTCAAAACCAAAGGTTGTGTGGTTGACTTTTTTGAGTGGCTATCCTGTCCCTTAGTTCTAATAATTTGCTTCGATATTAAGATAATGCTTTCCTTTTCGACAAGCCAAGATCTCTAATGGACTTTAAAAGTGAGGCCTTAAGCATTTTCGGAGACTTTGTTGCGATAGCAACTAAAGTTTGTATAATGAAAGACTAGCGTATCCAAATTACTGTTCTAGAATATTTTATACTTCACCAAAACATCCTTCTGGGCACATCTGCGTTAGTATGTCCTTTTCAATTCAAAAGGTGTCATAATAATTATTCTTGTAATCAAAGACTTTGATGCTTTCGTGCTTGATATGGATGTCTTTTGGGTGACAGTCATTTTATGGTCGTTTGCTTAGTTCCATTACAACACTGTATTGCAAGAAATCCTTTAGACTTATATATTCAATTATAATTCATTTCTGGTGGAGCAATTATTGTTCTAGTCTCTGTAAATTTTCTCTTTAATATAACTTAATTTCTTTAAAATAAAAGAAAAGGAAGGTATCCCAGAACTTACAAAGGACAGTTAATGTGATGTTCTCCTGTTTTATGTTTTTAAATCTGTAGATTTAGTACTTAATTCAAGTCCCTTGTTTTCCCTTTTAAGCTAACCTTAATGTTTACATGTCAGGGGTTCTTTTCAAGGATCTTAAGATGCTTTCAGCTCAACAGTTAAAGTCCCTCATTTTCCACCAGATTATCTATGTTTTTTAGCGGTGCTGCTAGGTGGATTTGAGCCAGTACCAAGGAAATGGTGCCTCTGTCAATAGTACTGTTTCTTCTTCCTTCATCCCTAATCCAGCCATCTCTCTGTCTCTAATCTCTATTATATGTACAAGTTCTTTATGCTCTGAAGGAAACTTCATTTTCAACTTGTACTACCAAAAGCGTAACTAGAATAAATTTCTCCTTTTCCACCTGTTGGCCAAATTTGAAGTTTCGTTTCTAATTGTCTATGTTAGCATAGGAGCTTATTGCATTTCTTAATCATTCGTCTATATGGATGGATAAAGATGCTTTTAGTTTTGGACTAGTTGAGAATCATACCAAAAAG

mRNA sequence

ATTAAATTAAACTAAATCAATATTAAAATTAAAATGTTTTATTACCAATTTCCGTGAGTCAAAAACCTATTCCGAAGTTTTCATGTTCATCCTGAAAATAAGAACGTCGTTTTTTCCCCTAATTTTGCGAAGTTGAAATTTCTAAAATTTTGACCTTTCCATTTTCCTATACACAAAGATCGCTGGGTTACGGCGAACGGCTGAAGGAAGAAGCTAATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGCTCTCCGTTTCCTCTATTTCGCCAGCGCCGGATTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAACGCAATTCGCTGTTGAAACAACAGCAGAAGCAGCGGTCGAATCATCAATTATCGGAAGCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGATTACAGGGGTTCTTTTCAAGGATCTTAAGATGCTTTCAGCTCAACAGTTAAAGTCCCTCATTTTCCACCAGATTATCTATGTTTTTTAGCGGTGCTGCTAGGTGGATTTGAGCCAGTACCAAGGAAATGGTGCCTCTGTCAATAGTACTGTTTCTTCTTCCTTCATCCCTAATCCAGCCATCTCTCTGTCTCTAATCTCTATTATATGTACAAGTTCTTTATGCTCTGAAGGAAACTTCATTTTCAACTTGTACTACCAAAAGCGTAACTAGAATAAATTTCTCCTTTTCCACCTGTTGGCCAAATTTGAAGTTTCGTTTCTAATTGTCTATGTTAGCATAGGAGCTTATTGCATTTCTTAATCATTCGTCTATATGGATGGATAAAGATGCTTTTAGTTTTGGACTAGTTGAGAATCATACCAAAAAG

Coding sequence (CDS)

ATGGCGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGCTCTCCGTTTCCTCTATTTCGCCAGCGCCGGATTCATTTTCACCATCGCGATAAACAAGTGGCGGGAGATCGAACGCAATTCGCTGTTGAAACAACAGCAGAAGCAGCGGTCGAATCATCAATTATCGGAAGCTCGTAATGATGCGGTGCAGAAAGTCGTCGAGTGA

Protein sequence

MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARNDAVQKVVE
Homology
[Close]
BLAST of ClCG11G017320 vs. NCBI nr
Match: XP_038897241.1 (uncharacterized protein LOC120085366 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          MAGEEVAGPAGPK LR LYFA AGFIFTIAINKWREIERNSLL+QQQKQR NHQLSE+RN
Sbjct: 1  MAGEEVAGPAGPKVLRLLYFAGAGFIFTIAINKWREIERNSLLEQQQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D+VQKVVE
Sbjct: 61 DSVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. NCBI nr
Match: XP_011654034.1 (uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharacterized protein LOC105435291 [Cucumis sativus] >KGN55049.1 hypothetical protein Csa_012569 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M GEEV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+QQQKQR NHQLSE+ N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. NCBI nr
Match: XP_008463762.1 (PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo] >KAA0066753.1 transmembrane protein [Cucumis melo var. makuwa] >TYK27900.1 transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-20
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M GEEV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+Q QKQR NHQLSE+RN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. NCBI nr
Match: CED89884.1 (uncharacterized protein [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M G+EV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+QQQKQR NHQLSE+ N
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. NCBI nr
Match: XP_022134299.1 (uncharacterized protein LOC111006563 [Momordica charantia] >XP_022134378.1 uncharacterized protein LOC111006563 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          MAGEEV+GPAGPK LRFLYFA AGF+F IA+NKWRE+ER SLL+Q QKQ  NHQ SE  N
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M GEEV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+QQQKQR NHQLSE+ N
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match: A0A5D3DXD1 (Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00850 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M GEEV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+Q QKQR NHQLSE+RN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match: A0A1S3CKG5 (uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M GEEV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+Q QKQR NHQLSE+RN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFICSFAINKWREIERNSLLQQHQKQRLNHQLSESRN 60

Query: 61 DAVQKVVE 69
          D VQKVVE
Sbjct: 61 DTVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          M G+EV GPAGPK LR LYFA AGFI + AINKWREIERNSLL+QQQKQR NHQLSE+ N
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MAGEEVAGPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARN 60
          MAGEEV+GPAGPK LRFLYFA AGF+F IA+NKWRE+ER SLL+Q QKQ  NHQ SE  N
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVE 69
          DAVQKVVE
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of ClCG11G017320 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 8  GPAGPKALRFLYFASAGFIFTIAINKWREIERNSLLKQQQKQRSNHQLSEARNDAVQKVV 67
          GP  PK LR +YF  AGF+ T AINKWRE+ERNSLLKQ+Q++     +     D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 E 69
          +
Sbjct: 65 K 65

The following BLAST results are available for this feature:
BLAST of ClCG11G017320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897241.17.1e-2489.71uncharacterized protein LOC120085366 [Benincasa hispida][more]
XP_011654034.11.2e-2082.35uncharacterized protein LOC105435291 [Cucumis sativus] >XP_031739554.1 uncharact... [more]
XP_008463762.12.8e-2080.88PREDICTED: uncharacterized protein LOC103501828 [Cucumis melo] >KAA0066753.1 tra... [more]
CED89884.13.6e-2080.88uncharacterized protein [Cucumis sativus][more]
XP_022134299.14.7e-2077.94uncharacterized protein LOC111006563 [Momordica charantia] >XP_022134378.1 uncha... [more]
BLAST of ClCG11G017320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G017320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2086.0e-2182.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1[more]
A0A5D3DXD11.3e-2080.88Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A1S3CKG51.3e-2080.88uncharacterized protein LOC103501828 OS=Cucumis melo OX=3656 GN=LOC103501828 PE=... [more]
A0A090ITT61.8e-2080.88Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
A0A6J1C1U12.3e-2077.94uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
BLAST of ClCG11G017320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16916.11.5e-1152.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G017320.1ClCG11G017320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane