ClCG11G017153 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G017153
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L2, chloroplastic
Location	CG_Chr11: 30407941 .. 30408678 (+)
RNA-Seq Expression	ClCG11G017153
Synteny	ClCG11G017153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGATGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGTCAGATGAAGGAACGGGAAGACTTAGAATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAACCTGTATGCTTTGGAAGAAGCTTGTACTGTTTGGGAAGGGATTTTGATTGATCAAAAAGAAGAATCTACTTCAACTGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCGAGGAGTAGCTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCTAATTGGTAGAAAAAAACCCCCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCATAGTAAATAA

mRNA sequence

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGATATATCATCATCTACATCCAGAAACCTGTATGCTTTGGAAGAAGCTTGTACTGTTTGGGAAGGGATTTTGATTGATCAAAAAGAAGAATCTACTTCAACTGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCGAGGAGTAGCTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCTAATTGGTAGAAAAAAACCCCCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCATAGTAAATAA

Coding sequence (CDS)

ATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGATATATCATCATCTACATCCAGAAACCTGTATGCTTTGGAAGAAGCTTGTACTGTTTGGGAAGGGATTTTGATTGATCAAAAAGAAGAATCTACTTCAACTGATATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTTCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCGAGGAGTAGCTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCTAATTGGTAGAAAAAAACCCCCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCATAGTAAATAA

Protein sequence

MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRRGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSDNLILRRHSK

Homology

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BLAST of ClCG11G017153 vs. NCBI nr
Match: KAG6382273.1 (hypothetical protein SASPL_158091 [Salvia splendens])

HSP 1 Score: 337.8 bits (865), Expect = 5.9e-89
Identity = 174/189 (92.06%), Postives = 177/189 (93.65%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           MSPTLP+ICGSIDI SSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 1   MSPTLPIICGSIDI-SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR
Sbjct: 61  LGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 121 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSD 180

Query: 181 NLILRRHSK 187
           NLI+RR SK
Sbjct: 181 NLIVRRRSK 188

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BLAST of ClCG11G017153 vs. NCBI nr
Match: KAG6383879.1 (hypothetical protein SASPL_156292 [Salvia splendens] >KAG6384642.1 hypothetical protein SASPL_155485 [Salvia splendens] >KAG6384694.1 hypothetical protein SASPL_155459 [Salvia splendens] >KAG6384699.1 hypothetical protein SASPL_155475 [Salvia splendens])

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-87
Identity = 172/189 (91.01%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           MSPTLP+ICGSIDI SSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 1   MSPTLPIICGSIDI-SSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 60

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGR
Sbjct: 61  LGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGR 120

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSK WLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 121 AGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSD 180

Query: 181 NLILRRHSK 187
           NLI+RR SK
Sbjct: 181 NLIVRRRSK 188

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BLAST of ClCG11G017153 vs. NCBI nr
Match: YP_009758282.1 (ribosomal protein L2 [Rubus amabilis] >YP_009758306.1 ribosomal protein L2 [Rubus amabilis] >YP_010142841.1 ribosomal protein L2 [Rubus sachalinensis] >YP_010142865.1 ribosomal protein L2 [Rubus sachalinensis] >QIN90061.1 ribosomal protein L2 [Rubus amabilis] >QIN90086.1 ribosomal protein L2 [Rubus amabilis] >QQL03858.1 ribosomal protein L2 [Rubus sachalinensis] >QQL03883.1 ribosomal protein L2 [Rubus sachalinensis])

HSP 1 Score: 321.6 bits (823), Expect = 4.4e-84
Identity = 168/189 (88.89%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S +ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of ClCG11G017153 vs. NCBI nr
Match: RVW36222.1 (50S ribosomal protein L2, chloroplastic [Vitis vinifera] >RVW71330.1 50S ribosomal protein L2, chloroplastic [Vitis vinifera])

HSP 1 Score: 320.9 bits (821), Expect = 7.5e-84
Identity = 165/176 (93.75%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 14  ISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAAGA 73
           ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEITLGKGGQLARAAGA
Sbjct: 133 ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA 192

Query: 74  VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKR--- 133
           VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKR   
Sbjct: 193 VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVV 252

Query: 134 RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSDNLILRRHSK 187
           RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSDNLILRR SK
Sbjct: 253 RGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 308

[Close]

BLAST of ClCG11G017153 vs. NCBI nr
Match: YP_009715437.1 (ribosomal protein L2 [Colvillea racemosa] >YP_009715457.1 ribosomal protein L2 [Colvillea racemosa] >YP_009715752.1 ribosomal protein L2 [Zenia insignis] >YP_009715772.1 ribosomal protein L2 [Zenia insignis] >QGL08549.1 ribosomal protein L2 [Colvillea racemosa] >QGL08570.1 ribosomal protein L2 [Colvillea racemosa] >QGL08864.1 ribosomal protein L2 [Zenia insignis] >QGL08885.1 ribosomal protein L2 [Zenia insignis])

HSP 1 Score: 320.9 bits (821), Expect = 7.5e-84
Identity = 169/189 (89.42%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S  ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

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BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 136/144 (94.44%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGNVGVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRRSRKRNKYSDNLILRR SK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 136/144 (94.44%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGNVGVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRRSRKRNKYSDNLILRR SK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-69
Identity = 135/145 (93.10%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 45  STDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 104
           STDMPLGT IHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT
Sbjct: 131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT 190

Query: 105 VGQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWG 164
           VGQVGN GVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWG
Sbjct: 191 VGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250

Query: 165 YPALGRRSRKRNKYSDNLILRRHSK 187
           YPALGRRSRKRNKYSDNLILRR SK
Sbjct: 251 YPALGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot
Match: Q2L944 (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-69
Identity = 135/144 (93.75%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGNVGVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRRSRKRNKYSDNLILRR SK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.2e-69
Identity = 135/144 (93.75%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGN GVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRRSRKRNKYSDNLILRR SK
Sbjct: 251 PALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL
Match: A0A7T7IE65 (Ribosomal protein L2 OS=Rubus sachalinensis OX=59502 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 168/189 (88.89%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S +ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL
Match: A0A6G8QRU1 (50S ribosomal protein L2, chloroplastic OS=Rubus amabilis OX=616954 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 168/189 (88.89%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S +ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLG+
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGK 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL
Match: A0A7T7D7D8 (Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.6e-84
Identity = 169/189 (89.42%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S  ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL
Match: A0A438GGK8 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A_1 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.6e-84
Identity = 165/176 (93.75%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 14  ISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEITLGKGGQLARAAGA 73
           ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEITLGKGGQLARAAGA
Sbjct: 133 ISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA 192

Query: 74  VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKR--- 133
           VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKR   
Sbjct: 193 VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVV 252

Query: 134 RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSDNLILRRHSK 187
           RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSDNLILRR SK
Sbjct: 253 RGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 308

[Close]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL
Match: A0A649X4M7 (50S ribosomal protein L2, chloroplastic OS=Colvillea racemosa OX=191917 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.6e-84
Identity = 169/189 (89.42%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MSPTLPVICGSIDISSSTSRNLYALEEACTVWEGILIDQKEESTSTDMPLGTTIHNIEIT 60
           M   LP+   S  ISSSTSR  YALEEACTVWEG+LIDQKEESTSTDMPLGT IHNIEIT
Sbjct: 124 MGNALPL---SAVISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEIT 183

Query: 61  LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 120
           LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR
Sbjct: 184 LGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGR 243

Query: 121 AGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGYPALGRRSRKRNKYSD 180
           AGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGYPALGRRSRKRNKYSD
Sbjct: 244 AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSD 303

Query: 181 NLILRRHSK 187
           NLILRR SK
Sbjct: 304 NLILRRRSK 309

[Close]

BLAST of ClCG11G017153 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 255.4 bits (651), Expect = 3.6e-68
Identity = 131/144 (90.97%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGNVGVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRR+RKR KYS+ LILRR SK
Sbjct: 251 PALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 255.4 bits (651), Expect = 3.6e-68
Identity = 131/144 (90.97%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 46  TDMPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 105
           TDMPLGT IHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV
Sbjct: 131 TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

Query: 106 GQVGNVGVNQKSLGRAGSKCWLGKR---RGVAMNPVDHPHGGGEGRALIGRKKPPTPWGY 165
           GQVGNVGVNQKSLGRAGSKCWLGKR   RGV MNPVDHPHGGGEGRA IGRKKP TPWGY
Sbjct: 191 GQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGY 250

Query: 166 PALGRRSRKRNKYSDNLILRRHSK 187
           PALGRR+RKR KYS+ LILRR SK
Sbjct: 251 PALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of ClCG11G017153 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-23
Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 48  MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 107
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 108 QVGNVGVNQKSLGRAGSKCWLG---KRRGVAMNPVDHPHGGGEGRALIGRKKPPT---PW 167
            V N     K L +AG   WLG   K RGVAMNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

[Close]

BLAST of ClCG11G017153 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-23
Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 48  MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 107
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 108 QVGNVGVNQKSLGRAGSKCWLG---KRRGVAMNPVDHPHGGGEGRALIGRKKPPT---PW 167
            V N     K L +AG   WLG   K RGVAMNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

[Close]

BLAST of ClCG11G017153 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 48  MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 107
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 108 GQVGNVGVNQKSLGRAGS---------KCWLGKRRGVAMNPVDHPHGGG 146
           GQV   G  +K L +AG+          CW    RGVAMNPV+HPHGGG
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW-PVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:

BLAST of ClCG11G017153 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6382273.1	5.9e-89	92.06	hypothetical protein SASPL_158091 [Salvia splendens]	[more]
KAG6383879.1	4.2e-87	91.01	hypothetical protein SASPL_156292 [Salvia splendens] >KAG6384642.1 hypothetical ...	[more]
YP_009758282.1	4.4e-84	88.89	ribosomal protein L2 [Rubus amabilis] >YP_009758306.1 ribosomal protein L2 [Rubu...	[more]
RVW36222.1	7.5e-84	93.75	50S ribosomal protein L2, chloroplastic [Vitis vinifera] >RVW71330.1 50S ribosom...	[more]
YP_009715437.1	7.5e-84	89.42	ribosomal protein L2 [Colvillea racemosa] >YP_009715457.1 ribosomal protein L2 [...	[more]

BLAST of ClCG11G017153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A976	1.1e-69	94.44	50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ...	[more]
Q0ZIX7	1.1e-69	94.44	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]
Q14F95	2.4e-69	93.10	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q2L944	2.4e-69	93.75	50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A ...	[more]
Q4VZK5	3.2e-69	93.75	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]

BLAST of ClCG11G017153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T7IE65	2.1e-84	88.89	Ribosomal protein L2 OS=Rubus sachalinensis OX=59502 GN=rpl2 PE=4 SV=1	[more]
A0A6G8QRU1	2.1e-84	88.89	50S ribosomal protein L2, chloroplastic OS=Rubus amabilis OX=616954 GN=rpl2 PE=3...	[more]
A0A7T7D7D8	3.6e-84	89.42	Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1	[more]
A0A438GGK8	3.6e-84	93.75	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A_1 P...	[more]
A0A649X4M7	3.6e-84	89.42	50S ribosomal protein L2, chloroplastic OS=Colvillea racemosa OX=191917 GN=rpl2 ...	[more]

BLAST of ClCG11G017153 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	3.6e-68	90.97	ribosomal protein L2	[more]
ATCG01310.1	3.6e-68	90.97	ribosomal protein L2	[more]
AT2G44065.1	2.1e-23	47.62	Ribosomal protein L2 family	[more]
AT2G44065.2	2.1e-23	47.62	Ribosomal protein L2 family	[more]
AT3G51190.1	2.3e-14	44.04	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 47..163 e-value: 5.7E-60 score: 215.2
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 47..161 e-value: 5.9E-45 score: 152.5
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 17..109 e-value: 8.3E-31 score: 107.8
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 47..185 e-value: 1.5E-58 score: 196.3
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 110..185 e-value: 4.7E-28 score: 99.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..186
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 19..183
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 19..183
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 47..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G017153.1	ClCG11G017153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding