ClCG11G015073 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G015073
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTryptophanyl-tRNA synthetase
LocationCG_Chr11: 28371646 .. 28372292 (-)
RNA-Seq ExpressionClCG11G015073
SyntenyClCG11G015073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGTGGTACTTAACGCCAATGTGTTGTATAAAATATAAATTGTCACATAAGGGTAAAACTGTAAAATTACAAGCGCGTGGTACTTACGTAAACGTGTGGTATAAAATTATCAGTACGGACCTCATCTGCGAGCTGTGAAGACTGAAGCGCAGAAACGAGGATGGGTCGCTCACTTCTCTCTCACTTTCTCGTCCTCTCACACTCGTCTCCTCGCTTTACACCTTCTCTGTACGTACTTCTTCCCTTCTCAGCTCTCTTCGTCGCACACATCTACACGCAGTATCAAATGTAGCATCAAAATTTCTGAACGTTTTGTGATTTCTAAGTCGGATTCAACTATCGAGCAGATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTTCAGTTGGAAATAGTTCCCGATGCCTCACCGAACCTGCTGCGCCAGAGCGTCCTCCCAGTTCCTTCAAGTAATTTCTACTTCTACTGCATTCGTTATATTCGACCTCGAATTTCTTTCTTTTTTATAATACGAAGTATTGGTAGTGGATCGAGAATTGAATCTACTGTGTTCTTTGAGATTTCATTGTTCGCCAGAGTGTATAAAATTTCAACTCGTTACGGAATTTCGTAG

mRNA sequence

ATGCGCGTGTACGGACCTCATCTGCGAGCTGTGAAGACTGAAGCGCAGAAACGAGGATGGGTCGCTCACTTCTCTCTCACTTTCTCGTCCTCTCACACTCGTCTCCTCGCTTTACACCTTCTCTGTACGTACTTCTTCCCTTCTCAGCTCTCTTCGTCGCACACATCTACACGCAGTATCAAATGTAGCATCAAAATTTCTGAACTCGGATTCAACTATCGAGCAGATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTTCAGTTGGAAATAGTTCCCGATGCCTCACCGAACCTGCTGCGCCAGAGCGTCCTCCCAGTTCCTTCAAGTAATTTCTACTTCTACTGCATTCGTTATATTCGACCTCGAATTTCTTTCTTTTTTATAATACGAAGTATTGGTAGTGGATCGAGAATTGAATCTACTGTGTTCTTTGAGATTTCATTGTTCGCCAGAGTGTATAAAATTTCAACTCGTTACGGAATTTCGTAG

Coding sequence (CDS)

ATGCGCGTGTACGGACCTCATCTGCGAGCTGTGAAGACTGAAGCGCAGAAACGAGGATGGGTCGCTCACTTCTCTCTCACTTTCTCGTCCTCTCACACTCGTCTCCTCGCTTTACACCTTCTCTGTACGTACTTCTTCCCTTCTCAGCTCTCTTCGTCGCACACATCTACACGCAGTATCAAATGTAGCATCAAAATTTCTGAACTCGGATTCAACTATCGAGCAGATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTTCAGTTGGAAATAGTTCCCGATGCCTCACCGAACCTGCTGCGCCAGAGCGTCCTCCCAGTTCCTTCAAGTAATTTCTACTTCTACTGCATTCGTTATATTCGACCTCGAATTTCTTTCTTTTTTATAATACGAAGTATTGGTAGTGGATCGAGAATTGAATCTACTGTGTTCTTTGAGATTTCATTGTTCGCCAGAGTGTATAAAATTTCAACTCGTTACGGAATTTCGTAG

Protein sequence

MRVYGPHLRAVKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIKCSIKISELGFNYRADHFLRLEANTPSLIRSFRFIGLQLEIVPDASPNLLRQSVLPVPSSNFYFYCIRYIRPRISFFFIIRSIGSGSRIESTVFFEISLFARVYKISTRYGIS
Homology
[Close]
BLAST of ClCG11G015073 vs. NCBI nr
Match: KAA0038626.1 (tryptophan--tRNA ligase [Cucumis melo var. makuwa] >TYK31225.1 tryptophan--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-04
Identity = 34/51 (66.67%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 11 VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK 62
          VKTEA KRGWVA FSLTFSSSH RLLALHLL       QLSS   S    K
Sbjct: 27 VKTEAHKRGWVAPFSLTFSSSHNRLLALHLLLRI----QLSSRSLSAFGTK 73

[Close]
BLAST of ClCG11G015073 vs. ExPASy TrEMBL
Match: A0A5A7T8T8 (Tryptophanyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005110 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 34/51 (66.67%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 11 VKTEAQKRGWVAHFSLTFSSSHTRLLALHLLCTYFFPSQLSSSHTSTRSIK 62
          VKTEA KRGWVA FSLTFSSSH RLLALHLL       QLSS   S    K
Sbjct: 27 VKTEAHKRGWVAPFSLTFSSSHNRLLALHLLLRI----QLSSRSLSAFGTK 73

The following BLAST results are available for this feature:
BLAST of ClCG11G015073 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038626.12.4e-0466.67tryptophan--tRNA ligase [Cucumis melo var. makuwa] >TYK31225.1 tryptophan--tRNA ... [more]
BLAST of ClCG11G015073 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G015073 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8T81.2e-0466.67Tryptophanyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of ClCG11G015073 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G015073.1ClCG11G015073.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
molecular_function GO:0016874 ligase activity