ClCG11G014990 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G014990
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationCG_Chr11: 28312518 .. 28317898 (-)
RNA-Seq ExpressionClCG11G014990
SyntenyClCG11G014990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGACGTCGCGTGACTCGTGAGGGATAGTGGAAGCGGAATATCAAATTTGGCGATAGCTTCCATTTTGGTTCCGCCATTCGCAGTTGGATTGGAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCGTCGTTTAAGCGCCAATTCTTCATCTCTACCGCCTTGCATTCCCTACCTGTGTCTAACATCAGAGTTCGAAAATGTTCAACTGCTTCAGGAATCTTGGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTATGCAACGCCCTCACCTCCTTAATGTTTACTTCTCTTTCTTCAATCTCTTATCCACTAACGTCTGATTCTTATGTTCCGCTTTCTTGTCTAATTCAGGTTGAAGAATTTGCGCCTAAAATTAGACAAGTTGTTGACTGGTAAGTTCCTCTCTCTTTTCTCGCTCTCTCTTTCTCGCGCGCGCGCGCGCGCTCGCGCACATACACACAGACTCTCAGAAAGTAATAGACCTTGAAACACATTGGTATCTTGATGATGTTAGTGTATTATAACGCTGAAACCAAGAATACACGTACACTTTACGAGGTAAAAGTATGTGACCTAAGCGATGTGTTGAAGATTAAGATTAGAAGTCAGTGGCCTCTGTAGTAAAGGCCTAGAGTTAGTTATTGGAAATGTTGTCTTGTTTTCTTAGGTGAGACTGAGAAGTTGATTTTTGTTGGACGTAGGAGGTGGATTTTTGTCCTCCATTATTGTCTATGTTGGTATTTGGCCAGGCCTCTAGGTAAGTAAATTACGATGAGACAATTGCCTGTTATGCCCTAACCACTTAAGGATTCTTCACCAAGAGGTTGTATAATGAGATTCTATGATTTGGCATTTACTTCTCTCAACTGGAAAAAGAGATCGAAATCCATGCGAGATTGCATAATTTGTTAGGTTTACTTGTTCGACTGTGACTTTTAGGGAGATGTAAAAGGAACAAGAAAAAGCCAGGTAGTGGACAATTTCTCAAAGACAGAAGTTAAATTATTTGTCGTCTTTACAACCTTTTTTTATATTAACTTGGGGGTAAATGATAATCTCATTGGCGAATTGGACCATTGAAATGCAGGTCTGGTAGTTCTCCTTTTTTTTTTCTTTTTTTTTTTTTTCCTTTCCTCTCTCTCTCTGAAGTTAAGAATACTCAAAAGTCGGAACTTCCTCATGATGTTCATTGTTGATTTTTTTAACAATTTGTAAGCATGAAGCTCTTGGATCTAGAAGACCTACGAATTGGATAACTAGTCTTATTACATTGGAAAATCGAAGATACCCTTGTTTGTGGTACAAACATTCTATTAGCCTCTTACTCTCTTTCAAGTTACAACTCTTTATCAATGAAACTGTTTTCTATCCAAAAAGAAAGGGTTACAACTCTTTATCTGAAGGGAAAATCATCTCAAGCCTTTGATAATAGTAAGTAATCAGGTGGCCCAGGGGATAACAATCGATAATATATCATAATACACCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCAAAAAAAAAAAAAGAAAAAAAAAAGAAGCACTTAGTTTGCTTTTCTAGATATAGACCACCATATAAAATTTTATCATGTATGTTCGTCAACTGCCCAATTCAGTTGATAATAATCATCGATATCCATCATTTCTTCTTCAAACATTCAATAGAAGGGATTACGGAAGACAGACCCAATTATAATTAATAAGCTAGCATATAATCATTGTTAGGACAAATATGAGTGCACCAAGGTAAACCAAATTGAATGAAATAAATCCCAAACATCCTACTTGACTCCCATGACAGCATAAGATCAAACGACTGAATCTTTAGGAGTGAGGTTTGGTCACACAAAAGCTGTTCAATGCAGTGGGAAGGCTTCATTGGGAAGCACCCAGACAAATCAAAAGAGTTAAGGAGAATTCCAGATTTTTTGGAGAAAGGACAATGTAGGGAGAGATGACAACAATTTTGTTCATTTTCCTTATGGAGAGTGCACTGGCTTGAGAGAAGAGAGAATGTGGGGTTCCTTTTTTGAACCTTCGCAGAAATTTGAGCCTCCATGAGCCGGGGTCAATCCAAAAAGCTTGCCTTTCCGGATTCTTTCTTCATCTAAATAATCTTAATGAATGGCTTTGAAGGGACACCACCACATCTCCTTTATTGTTTAGGGAACTAGGAAGGTTGGAAAAAGAGGCAATTAGAATCCAAACTCCAACAGTGAACAGCCCTGTTTACTTAGGAATTCAAACATTTTCCAAAAGAAATGAAAGATCTATTCCCTCAAGAAGTTCTTATATTGCCTTCTGAACTTGAGGTTCCAACATTAGCCAGATTCCAGGGAATGATCCCTGACCCGGATGGAGTCAAAATTAGTGAGGTGGAAATTTTGGAAACATTCTTCTTTAGAGGTTGTGAGGTGTCCATTGATCTGAATTCTGACCAGAAGGAAATTGGGACACAATTATCGACATAACATTCATAATCACCTTCATCCTCTGTCTACCTTTAGCACTCGGCTGTTTTACCCTTCAGTTTCTACTAACTTTAATATGATAATATTATGTTTCAGGTTTGGGCAGCTCCAGACTGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGGTGCATGCTATCACTCGTAGGAGTTCTTTGTTGTCAATCATTTTGCAAATTGTTTGTCGTTTTTCTTCTAGTATGCCTTTGCTTGTTTCACTGTTAAGTGTTGACTTCAAATCACACAAGTCTTTTCAAAATGGAAATTTTATATCAGACTCATTTTTTCATTGGACAGTAGTAATCATAAGACATGGAGGTATTGTCTTTTGTTGCCACGGAAACTAGTGAGATAATGAAGCACATTGAGGAGGGATAGCATCAATAGGATCCAAAACTTTGTTCTGTTTACTTGTGCTATCAATTGCTAGATAACTGATTACGACTTCAGAATTCCCAACCCTAACCACAGACGTTTATAAATGTTTCTGGAAGAGCATTCCAGGAGAGCATTTTGAGCATGGAATTTTTTTGAAGTGATCAAAATGCTAAAATCTCAAGTTGCTTTTTGTCAAGAGGATAGGCAAACAAGTGTAGTGTAGCAAAAATTAGTACTAATTTTCCTACTATTTACAGATACTGAAGGTGGTAATCAGCGGAATGACGTTCCTGAACCATTTGAAAATAGGTAACCTGGTTATTTTGCAATTTGGGCTATCCCAACATTTGGCAGGAAATTTTGTCATAATCTTTTTTCTTTTTTTGTCCCCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCTAAGGTTCGGTAGGTTGTTTCATCTGTTTCATCATTCATTATTGGCATGTTCCTCAACATCATATGTCGTTGAAATAATTAATTTTGCTACAGGTTACCAAATGATATTTGAATTACAATTCGAACTAAACATCCATTAATCTTAACCTTAGTTCAAATGTTTAATTCACACATTATTTTAATTTCACTCTAGTTATGGGGGCTGATTACCGCACATTCTAGTTATCACATCAGATGTTTATCCAAAAAATTGTCTGTTGCGAAAGAGACCTGTCCTCGTTATTGATCTTATCAACTCTCCTTTGAGAGATGATGGAGACAGATTCAGGTTAATTTAGCCCCATCATCTTAATCTAAATTATTCTATTTATCTAATTTAGGGGGTGTTTGATAAATGGATATGGGTATGGGTTGGGTTGGGTTGGGTGGGTATTTATTACCCATGTTTGTTAAGCCTATAAAGAAAAATGGTGGGTTTAGTAACCCACCGTTTTACCCCCTCAAAACTCACCTTAATAACTAGGTGAGTTTTATTTTCGGCCGTTTGATTTCCCATCTTCTCTCTTATTTCATTTTCCACCGTATTTCTCCCCTCTTCTCTCTTCTTTCTCGTCATTTTTCCTTCTCTCTACTTCTGATGCTTAGTTTCCTCCTCCATCTTCTACAATCTCCCACTGTTTGGTTTCTTCCCTCATTTTCTCTCTTATTTCGCTGTCCCTCTTTTGATTTTTTGGATTTCTTTTTTGATTTCTGTTTTTTTTCTTTCGGATTGCTGTTTTTTTTTTTTTATTTCTTCGATTTCTTTTTCGATTGCTGTTTTTTTTCGGATTTATGTTCTCTTTTTCTGAGAGAGAGAGAGAATGGAAAAAAGGAAAAAAATCAAAAAATCAACTGAAAAAATAGCAAAAAAAGCAAAAACAAAAAACAAAGAGCAAACAATAAAAAAAAATAGCAAAGAGGAAATAAATAAATAAATAGACAAACGAATAAAAATACAAATAAAGTAAAAAAAACAAACGAATAAAAATACAAATAAAGGAAAAAAAAAAAGGTACGAACAAATAGCAAAAAGAAAAAAAATTAAAAAGCAAACAGATAAAAATAGCAAAAGGAAAAACAAGCAAAAAAAAATAAAATAAAAAGGAAAAACAAGAAAAAAAAAAAAACTAATACCCAAACTCAACTTAGTACAACACCCCAAACACACCTAAACATACGGACTTTCTAACTCAACTCAAGTTAGCACAACAAACATAGACATTTCAACTCAATCCAACTCTGCCTCAAACACAAACAATTTAACTCTCCAGACAATCTAACTCCCCTTATAATTATTACCAACTCAATTCAACTATGTGCGACCAACTCCCCCTTATTCGTTCATCTACCTTTACATGAGGAAGAAAAAGAAACTGTCAAAATTTGTATCTTTGCAGGTATTTTCTTTTCAGACTTGTCTCTTATCCTTGGGATATTACAAGGCATGGCTTTGCTGGGTCCATCGGTTACCCTACGTATGAGGTGCAAATGCCCAATAAGAATATTGAGAATAATTATTATAAATATTTAGCAACATGATGCATCCTGTTAATTAATAAATTTTCTCTAGATGGTCTCCATAAAATAATCAAGA

mRNA sequence

AAGACGTCGCGTGACTCGTGAGGGATAGTGGAAGCGGAATATCAAATTTGGCGATAGCTTCCATTTTGGTTCCGCCATTCGCAGTTGGATTGGAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCGTCGTTTAAGCGCCAATTCTTCATCTCTACCGCCTTGCATTCCCTACCTGTGTCTAACATCAGAGTTCGAAAATGTTCAACTGCTTCAGGAATCTTGGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTTGAAGAATTTGCGCCTAAAATTAGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACTGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGGTGGTAATCAGCGGAATGACGTTCCTGAACCATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCTAAGGTTCGGTATTTTCTTTTCAGACTTGTCTCTTATCCTTGGGATATTACAAGGCATGGCTTTGCTGGGTCCATCGGTTACCCTACGTATGAGGTGCAAATGCCCAATAAGAATATTGAGAATAATTATTATAAATATTTAGCAACATGATGCATCCTGTTAATTAATAAATTTTCTCTAGATGGTCTCCATAAAATAATCAAGA

Coding sequence (CDS)

ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCGTCGTTTAAGCGCCAATTCTTCATCTCTACCGCCTTGCATTCCCTACCTGTGTCTAACATCAGAGTTCGAAAATGTTCAACTGCTTCAGGAATCTTGGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTTGAAGAATTTGCGCCTAAAATTAGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACTGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATACTGAAGGTGGTAATCAGCGGAATGACGTTCCTGAACCATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTGAATAAGGAGTAG

Protein sequence

MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE
Homology
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BLAST of ClCG11G014990 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 7.6e-68
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           +TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPE FEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

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BLAST of ClCG11G014990 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 9.3e-66
Identity = 132/145 (91.03%), Postives = 136/145 (93.79%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASS PS K + FIST LHSLP S IR+RKCSTAS ILASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEP+IRADTEGGNQRND+PE FEN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEGGNQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

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BLAST of ClCG11G014990 vs. NCBI nr
Match: XP_004136231.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus] >KGN60306.1 hypothetical protein Csa_001068 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +R  STASGI ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           +TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGG+QRND+PE FEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           M S AL LLKGASS PS   Q FIST+L+SLPVSNIR+RKCSTA GI ASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISL P++VEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV E FEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. NCBI nr
Match: XP_022941306.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022941307.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6608102.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGS AL LLKGASS PS   Q FIST+L+SLPVS+IR+RKCSTA GI ASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISL P +VEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV E FEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-41
Identity = 91/145 (62.76%), Postives = 108/145 (74.48%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGS+AL LLK  ++    +   F S +  S  +     R  ST S +L    PPD+PRLA
Sbjct: 1   MGSRALLLLKATTA----ETLLFTSKSTFSKALIRNSTRSFSTRSALL----PPDLPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISLTP +VEEFAPKIRQV+DWFGQLQ VDLQSIEPSIRADTEG N R+D PE FEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REA+I A+P ++EPY+KVPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.3e-37
Identity = 89/145 (61.38%), Postives = 106/145 (73.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGS+A+ LLKG S  P     F ++    S   S  R    +TA+G  +SL+PPDV RLA
Sbjct: 1   MGSRAVLLLKGPSP-PKHSILFLLNHKKISPAPSIRRFTTKATANG--SSLEPPDVARLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISLTP QVEEF PKIRQV+DW   L +VDL S+EPSIRADTEG N R+D PE FEN
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 REAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.3e-37
Identity = 87/146 (59.59%), Postives = 103/146 (70.55%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRV-RKCSTASGILASLQPPDVPRL 60
           MGS+AL LLK A      K Q          P S +   R+ S  +   +SLQPPDV RL
Sbjct: 1   MGSRALLLLKVAL---PLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61  AETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFE 120
           AETARISL   +VEEFAPKIRQV+DWFGQLQ VDL S+EP+IRAD+EG N R+DVPE F 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 121 NREAMIGAVPVFDEPYIKVPKVLNKE 146
            REA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-32
Identity = 67/97 (69.07%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 50  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P + EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE 146
             R D PE F NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-32
Identity = 67/97 (69.07%), Postives = 81/97 (83.51%), Query Frame = 0 

Query: 50  SLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P + EEFAPKIRQVVDWFGQLQ VDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE 146
             R D PE F NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           +TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPE FEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.7e-68
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +RK STASG+LASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           +TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPE FEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.7e-66
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGSKALPLLKGASSFPS KRQ FISTA HSLPVSNI +R  STASGI ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           +TARISLTPTQ EEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGG+QRND+PE FEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.8e-61
Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTALHSLPVSNIRVRKCSTASGILASLQPPDVPRLA 60
           MGS AL LLKGASS PS   Q FIST+L+SLPVS+IR+RKCSTA GI ASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPFEN 120
           ETARISL P +VEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV E FEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 121/147 (82.31%), Postives = 130/147 (88.44%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSFKRQFFISTA--LHSLPVSNIRVRKCSTASGILASLQPPDVPR 60
           MGSKALPLLKGA S PS +RQ FI      H+LP+S+ ++RKCST   I ASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPEPF 120
           LAETARISLTPT+VEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRND+ E F
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIKVPKVLNKE 146
           ENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of ClCG11G014990 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 135.2 bits (339), Expect = 4.2e-32
Identity = 61/111 (54.95%), Postives = 86/111 (77.48%), Query Frame = 0 

Query: 35  NIRVRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDL 94
           N R+ +  ++    + LQPPDV RLA+TARISLTP ++EE   KIR+V+DWFGQLQ VD+
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDV 104

Query: 95  QSIEPSIRADTEGGNQRNDVPEPFENREAMIGAVPVFDEPYIKVPKVLNKE 146
            S+EP+IRA+ +GGN R D PE F+NR+++  ++P F++ Y+KVPK+LNKE
Sbjct: 105 NSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of ClCG11G014990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466091.17.6e-6893.10PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_038897282.19.3e-6691.03glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
XP_004136231.11.6e-6590.34glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_023521629.12.0e-6085.52glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_022941306.12.0e-6085.52glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
BLAST of ClCG11G014990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK22.8e-4162.76Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9INH04.3e-3761.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
B9RRX24.3e-3759.59Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
A2XK572.4e-3269.07Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ12.4e-3269.07Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of ClCG11G014990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6R53.7e-6893.10Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE83.7e-6893.10Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A0A0LJU57.7e-6690.34Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1FM339.8e-6185.52Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1CQ901.8e-5982.31Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
BLAST of ClCG11G014990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.14.2e-3254.95FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.60coord: 53..93
e-value: 5.3E-7
score: 31.6
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 55..142
e-value: 4.6E-15
score: 53.7
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 67..138
e-value: 6.8E-9
score: 35.9
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 18..145
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 50..143
score: 18.927122
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 51..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G014990.1ClCG11G014990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity