ClCG11G011880 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G011880
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein IN2-1 homolog B
LocationCG_Chr11: 24296123 .. 24299356 (-)
RNA-Seq ExpressionClCG11G011880
SyntenyClCG11G011880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTGAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGTATGTTTACTTCTTCCCTCCTTTCTTTGCTGTGTGAGAAAATGGAGGACCTCATCTATGTGTGTGCTCAAAGAATTGATAAAAGAATTATTTCCCTCCTGTCTCTCATATGAATTGAGTTGACTGCACGAAAGAGGTGTATGTCCAAAAACTCTGGTGCATGAACTCGATGTAACAGGGTTGGTATGCATGAAAGTGATTTATACCTTGAGAGGCTCGGGGTGTATGAAAGAGATGCACGTTCAGTGGGTTATGTATATTTGAAACAAATGTATATTGAACTATGTGTACAGAAGAGGTGCACATCCCGAATTGTTAAAGAGGAGTGGAAAACAAGGAAGTAAATTTTAGGTACACCATAGTAATTCTTTGTATAGTCTTGCTGATTTAATATGTGAGGTCTCTTTCTGAGTATATTAATACTCACCCCATTTTTTCTAAATGTTGTTTCAAGTAAAAATAAAGCGAGCTAGGCGACCGGTGGGGTTTGTTCAAGGGGCCATGGAAGATTGTTTGTTTTTTATTTTTTATAATTTCGTTTTGAATTATTTCTTCTGCATTTAAATTCAAGTTTCTTTTTCTAGAAGTTCATCAATAAGTTAGTTAAGACTGTTGGATACTTTATGTTATTTTTGTCACCAATTTTGTTGCATGGTTGGTTTATGAACTAAGTCTTCCTTGGCTACAAATTTTGAGGTTTTTTGTTTAAAGGTGATGTATATTCTTCTACGACCATGTGTATGCATGTATGAAGATGATGGCCCGGCCTCTGAATCATAATATCCTGAATCAAAGGCTGGTTGCATCATTATCAAACTAGCATAACCAGTTTGGCTCTACGTCTGCGTCATAGGAGGCAAGCCCAAGTCCAATTTGTTAGGCCCAAGGGCCAGATACATGGACCAACCAAAGCCAAGCCCACAAAGCCTACCTGATAACTCTACGAAAAGAAGAGTTCTCTTCATTTGTGGGGTTTAGAAAATTTTACACTTCAAAGAGTCGAGAGAGAATTCTCCCTACTTCAAGAAATTCCTCCAACTTCAAGAAATCTCATGCGTTCCGCTTCTACACATGACTCCAACTTCAAGAAATTTCACGCGGAAAGCTAGTACGTAGTCATTTTTTTTTCTGCCCCCAATCACATTCCAGCCAACTACTCCTACCAAAGCGTCCATCTCTTGGTCTCTTCTTATCTTGCTTTCTCACAAGATTAAGTACGAGGCTTACAATAAGCATAGTACCATTAGAGAGCTTCTCACTACTGGTGCTGTTAAAATGGATCATATAAGTTATTAATCGTGCATTTTTATTACGAAAATCACTCCAAAAACCAGAGATAGCCCTAAGTTATTAATCAATTTCATTCTTGAATTATCTTACTCATGCAATGTTGTAAAAGGGTTATTCTAAACAACCTAAAATTTATAGACAAGCATGCTTTGAATTTGTTACTTTGCCATCAACACATTTGTACAAAATATATTATGCATTAATCCTTAGCTCAAGAGAAGTTAAAGCGCACCCAAAGCCTTGGATTTTGCTACTTGGTAATTAATACATTTGATAACTTGTAGAAATACAAGTTATTATAGTGATTTGGTCCTAATCAATGGAAAGGATTGAGTTTGCTCTTGAACTTGCAAAAAAAGTAGTGTAGTGGTTTGACTCTAAGCCATGGAAAGAGTCAAGGTTGCTAGTGACATACCCAAGAGGAGCTTGGAAAGTGGATGTAGCCGAATGTGCGTATAAAATCATTGTGTCATTTTCTCTATCCTTCTCCTAAGTTATTTTTGCAATTAATTTGATATTATATTTTATTGCATGAAATTAATTACAATTTTTAATTCTTGAAATCAATTACACATATTTGTTTATTTTAATTGGAAGTTCTTAAATTTTTATATATTTTACCAATCTTACTATTAGAATTAAATAGAATGCTATAAAGTATTAGTGTTAATTTATTGTCTATTTTAAAGTGAAATTATTTGCATAAAATCCTTGTTTAAATTACTTGTTATCAAAAAATTTGTTGATTTGTTTAATTGGGCCCACATTAGGAAAAAAATTGTAATTAGTTTGAATAAATCCTATTCACAACCCTCCTAGGGTTGCTATACCGATTCTACACATCTCTTTTCATTCTTTGATGACTTAGTTTTTATATTGAAAGGTCACAATGGTTTTCATAACTGATATGAGGCAACTGGGAAGTGTAACCTGTTTTCTAAAAATAATAAATAGAAAATAGAAAACCAAAAAACTAAGGCCCCCAACTTTTATAACTATTTAGTTTTTGGTTTTTGAATACTAACAAGCTTATAAACATTACTTCTACCAATAAGTTTCTATATTTTGTTATTCATTTTCTACTTATGTGATTTCAAAAACTAAGCTAAATTTTTTTAAAAAAAAGTTCTCCTAAAAAATTAGTTTTGATTTTTAGAATTTTACTTGGAATGAAAATGTTATCTTAAGATAGATGAAGATCATAATATATAAATTATGAAAAAATAAATAAGAAAATTCCAAAAACAGACAATGAAAAAAAAAAGTTATAAAATAGGACCTAATTAGTTACCCCAACTAACCTCTTAGCTATTTGTCTAGCTTCCCCTTTGTTTTATGGAAAAATAAGACAAGCATTGTGCCAAATTGGAAAAGTGTTAACTTGATGGGCTCTTTTTATATAGGTCCAAATCTAATATTCATGCTCTTTAGTTTTAATAAGTGAAAGAATAAATATTTGGTTTTTTTGGTTTCCTAGGTGCTTTCTCTGAATGCTTTTACATTGATTATCCATCTTTATTTTGTAGGGCTATTAAAACTCTCGGGATCTGAAGATTTTCTCTCTTCATCTCTTATCTCTATTTTGCTCGGGCGTTTTCAATGGTTGGAGTGTTTGATAGCTAGCCCAACTCCTTGACTTTGGTGCAGGCTTAACCAAGATCTTATTCCCACTGAAGAGGTTACTTGGATGGTCCCTCCTCTGAGGTCTTTTAAGGTGAATTCTAACGCTGCTATTGGAAGCATGCAGTGA

mRNA sequence

ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTGAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGCTTAACCAAGATCTTATTCCCACTGAAGAGGTTACTTGGATGGTCCCTCCTCTGAGGTCTTTTAAGGTGAATTCTAACGCTGCTATTGGAAGCATGCAGTGA

Coding sequence (CDS)

ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTGAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGCTTAACCAAGATCTTATTCCCACTGAAGAGGTTACTTGGATGGTCCCTCCTCTGAGGTCTTTTAAGGTGAATTCTAACGCTGCTATTGGAAGCATGCAGTGA

Protein sequence

MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAVKMAAELNQDLIPTEEVTWMVPPLRSFKVNSNAAIGSMQ
Homology
[Close]
BLAST of ClCG11G011880 vs. NCBI nr
Match: XP_038892871.1 (protein IN2-1 homolog B [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG TIGFSQPSSSS ISVYCIPFST+R SFS  ILSPLKL+K PSGRRARAVIA+
Sbjct: 1  MATFTLGSTIGFSQPSSSSDISVYCIPFSTTRLSFSSAILSPLKLKKKPSGRRARAVIAL 60

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAAE  Q+++P    +   PP
Sbjct: 61 KMAAEAFQEVLPPPLTSASEPP 82

[Close]
BLAST of ClCG11G011880 vs. NCBI nr
Match: XP_031742222.1 (protein IN2-1 homolog B isoform X2 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MATSTLG TIGFS  SSSS IS YCI  ST+RFSFS  I SPLKL+K P GRRARA+IAV
Sbjct: 3  MATSTLGSTIGFSYSSSSSDISAYCILSSTTRFSFSSIIPSPLKLQKQPPGRRARALIAV 62

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 63 KMAAQAFQEVLPPALTSVSEPP 84

[Close]
BLAST of ClCG11G011880 vs. NCBI nr
Match: XP_004143598.1 (protein IN2-1 homolog B isoform X1 [Cucumis sativus] >KGN50485.1 hypothetical protein Csa_000618 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MATSTLG TIGFS  SSSS IS YCI  ST+RFSFS  I SPLKL+K P GRRARA+IAV
Sbjct: 3  MATSTLGSTIGFSYSSSSSDISAYCILSSTTRFSFSSIIPSPLKLQKQPPGRRARALIAV 62

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 63 KMAAQAFQEVLPPALTSVSEPP 84

[Close]
BLAST of ClCG11G011880 vs. NCBI nr
Match: XP_031742223.1 (protein IN2-1 homolog B isoform X3 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MATSTLG TIGFS  SSSS IS YCI  ST+RFSFS  I SPLKL+K P GRRARA+IAV
Sbjct: 3  MATSTLGSTIGFSYSSSSSDISAYCILSSTTRFSFSSIIPSPLKLQKQPPGRRARALIAV 62

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 63 KMAAQAFQEVLPPALTSVSEPP 84

[Close]
BLAST of ClCG11G011880 vs. NCBI nr
Match: XP_008445827.1 (PREDICTED: protein IN2-1 homolog B [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG TIGFS  SSSS IS YCIP ST+RF FS  ILSPLKL+K  S RRARA+I V
Sbjct: 1  MATLTLGSTIGFSHSSSSSDISAYCIPSSTTRFCFSSIILSPLKLQKRTSRRRARALITV 60

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 61 KMAAQAFQEVLPPALTSVSEPP 82

[Close]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match: A0A0A0KLG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177050 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MATSTLG TIGFS  SSSS IS YCI  ST+RFSFS  I SPLKL+K P GRRARA+IAV
Sbjct: 3  MATSTLGSTIGFSYSSSSSDISAYCILSSTTRFSFSSIIPSPLKLQKQPPGRRARALIAV 62

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 63 KMAAQAFQEVLPPALTSVSEPP 84

[Close]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match: A0A5A7SXP4 (Protein IN2-1-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00210 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG TIGFS  SSSS IS YCIP ST+RF FS  ILSPLKL+K  S RRARA+I V
Sbjct: 1  MATLTLGSTIGFSHSSSSSDISAYCIPSSTTRFCFSSIILSPLKLQKRTSRRRARALITV 60

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 61 KMAAQAFQEVLPPALTSVSEPP 82

[Close]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match: A0A1S3BDL2 (protein IN2-1 homolog B OS=Cucumis melo OX=3656 GN=LOC103488732 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG TIGFS  SSSS IS YCIP ST+RF FS  ILSPLKL+K  S RRARA+I V
Sbjct: 1  MATLTLGSTIGFSHSSSSSDISAYCIPSSTTRFCFSSIILSPLKLQKRTSRRRARALITV 60

Query: 61 KMAAELNQDLIPTEEVTWMVPP 83
          KMAA+  Q+++P    +   PP
Sbjct: 61 KMAAQAFQEVLPPALTSVSEPP 82

[Close]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match: A0A6J1GXY4 (protein IN2-1 homolog B isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458219 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG +IG SQPSS S  SV+CIPFS  R SFS  I+SPLKL++  S RRAR VI+V
Sbjct: 1  MATWTLGSSIGVSQPSSCSDASVHCIPFSLRRLSFSSIIISPLKLQRQVSRRRARPVISV 60

Query: 61 KM-AAELNQDLIPTEEVTWMVPP 83
          KM AAE  Q+++P    +   PP
Sbjct: 61 KMAAAEDFQEVLPPALTSASEPP 83

[Close]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match: A0A6J1GZ79 (protein IN2-1 homolog B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458219 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0 

Query: 1  MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAV 60
          MAT TLG +IG SQPSS S  SV+CIPFS  R SFS  I+SPLKL++  S RRAR VI+V
Sbjct: 1  MATWTLGSSIGVSQPSSCSDASVHCIPFSLRRLSFSSIIISPLKLQRQVSRRRARPVISV 60

Query: 61 KM-AAELNQDLIPTEEVTWMVPP 83
          KM AAE  Q+++P    +   PP
Sbjct: 61 KMAAAEDFQEVLPPALTSASEPP 83

The following BLAST results are available for this feature:
BLAST of ClCG11G011880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892871.11.8e-2071.95protein IN2-1 homolog B [Benincasa hispida][more]
XP_031742222.16.0e-1664.63protein IN2-1 homolog B isoform X2 [Cucumis sativus][more]
XP_004143598.16.0e-1664.63protein IN2-1 homolog B isoform X1 [Cucumis sativus] >KGN50485.1 hypothetical pr... [more]
XP_031742223.16.0e-1664.63protein IN2-1 homolog B isoform X3 [Cucumis sativus][more]
XP_008445827.16.6e-1562.20PREDICTED: protein IN2-1 homolog B [Cucumis melo][more]
BLAST of ClCG11G011880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLG02.9e-1664.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177050 PE=4 SV=1[more]
A0A5A7SXP43.2e-1562.20Protein IN2-1-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A1S3BDL23.2e-1562.20protein IN2-1 homolog B OS=Cucumis melo OX=3656 GN=LOC103488732 PE=4 SV=1[more]
A0A6J1GXY47.4e-1257.83protein IN2-1 homolog B isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458219... [more]
A0A6J1GZ797.4e-1257.83protein IN2-1 homolog B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458219... [more]
BLAST of ClCG11G011880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G011880.1ClCG11G011880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010731 protein glutathionylation