ClCG11G010670 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G010670
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr11: 20734906 .. 20735780 (+)
RNA-Seq ExpressionClCG11G010670
SyntenyClCG11G010670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCTTCCCCGGTAAGTTACTCTGGCTAAGAAAGGGGTTCCTTTGATCTTGAGTGTTTGTTTTGCAAGGAGCATTCAAAAACATCTATACATATTCTTTGGAAATGTCCAATTTCAATGGAAGCTAAATTTATTTCTTATGATATTTCTATTATGTGGGATGATAGGTGTCGATGGAGTTACTGGGATTACTGGCATTAGATCTTTGAGAATGTTGCTCCTTTGGGAGGCAAGGAACAAATTATTATTTCAAAGACAATTGGTTGATCTGAAATCTTAGGGACATTTGAATGGCAAATATGTGGACTAGACTCCGCCTGAGGGTGCTAAAACCAAGGAGAAATGGGAGAAGTTGCTCCCTGTTAGTAGCTCCTCCTTAACGACTAGTTGGATTGCTCCGATTGTTTCTTGCTGGAAGTTGAATACTAATGCAGCTTGGTGCCTAATTACCAAATCAGGCGGCTTGGGTTGGGTTCTTCATGATCATCTTGGGCAAGTTTATCCTGTTGGGTTGAAATTTATAGCCCATTGTAAGGAAGTGAAGGTTCTGGAAGGAATGGTGATTTGCTCTAGTCTTGAAAGTATTTCATCTCTTGCTATCTCTAATATCTTCGTTAAATTTCATTGTTTGGAAGTTGTCAAGCTGTTGAATGATAAGGATTGATATTTCTGAAGTTTGTTCCTTCATTTTTTAGGCTAAGGATAGAGGCAAGGGGCTCAGCAGTGTTACTTATTCTCATGTTCATCGTCGTCAGAATGAGTTGGCTCACTGTGTTGCTCGTAAAGCGTTGCAGGATCGAGCTTCTTCCATTCTTCAGGTTCCTTATCTTGAGTGGTTCATGTTGTGTTTGACTCGAGATGTAGTCTTGTAG

mRNA sequence

ATGATATCTTCCCCGACTCCGCCTGAGGGTGCTAAAACCAAGGAGAAATGGGAGAAGTTGCTCCCTGTTAGTAGCTCCTCCTTAACGACTAGTTGGATTGCTCCGATTGTTTCTTGCTGGAAGTTGAATACTAATGCAGCTTGGTGCCTAATTACCAAATCAGGCGGCTTGGGTTGGGTTCTTCATGATCATCTTGGGCAAGTTTATCCTGTTGGGTTGAAATTTATAGCCCATTGTAAGGAAGTGAAGGTTCTGGAAGGAATGGCTAAGGATAGAGGCAAGGGGCTCAGCAGTGTTACTTATTCTCATGTTCATCGTCGTCAGAATGAGTTGGCTCACTGTGTTGCTCGTAAAGCGTTGCAGGATCGAGCTTCTTCCATTCTTCAGGTTCCTTATCTTGAGTGGTTCATGTTGTGTTTGACTCGAGATGTAGTCTTGTAG

Coding sequence (CDS)

ATGATATCTTCCCCGACTCCGCCTGAGGGTGCTAAAACCAAGGAGAAATGGGAGAAGTTGCTCCCTGTTAGTAGCTCCTCCTTAACGACTAGTTGGATTGCTCCGATTGTTTCTTGCTGGAAGTTGAATACTAATGCAGCTTGGTGCCTAATTACCAAATCAGGCGGCTTGGGTTGGGTTCTTCATGATCATCTTGGGCAAGTTTATCCTGTTGGGTTGAAATTTATAGCCCATTGTAAGGAAGTGAAGGTTCTGGAAGGAATGGCTAAGGATAGAGGCAAGGGGCTCAGCAGTGTTACTTATTCTCATGTTCATCGTCGTCAGAATGAGTTGGCTCACTGTGTTGCTCGTAAAGCGTTGCAGGATCGAGCTTCTTCCATTCTTCAGGTTCCTTATCTTGAGTGGTTCATGTTGTGTTTGACTCGAGATGTAGTCTTGTAG

Protein sequence

MISSPTPPEGAKTKEKWEKLLPVSSSSLTTSWIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKDRGKGLSSVTYSHVHRRQNELAHCVARKALQDRASSILQVPYLEWFMLCLTRDVVL
Homology
BLAST of ClCG11G010670 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-05
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNT+AAW   T +GG+GW+L D  G+V     + I   + +  LE MA  
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA-- 138

Query: 92  RGKGLSSVTYSHVHRRQNELAHC 115
             +GL ++   H    Q E  HC
Sbjct: 139 ICEGLRAIRQEHCRPIQQE--HC 157

BLAST of ClCG11G010670 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-05
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNTNAAW   T +GG+GW+L D  G+V     + I   + +  LE MA  
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA-- 138

Query: 92  RGKGLSSVTYSH 104
             +GL ++   H
Sbjct: 139 ICEGLRAIRQEH 148

BLAST of ClCG11G010670 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0

Query: 28  LTTSWIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEG 87
           L   W AP  +CWKLNT+A+W    + GG+GW+L D  G++   G   I   KE+  LE 
Sbjct: 101 LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALEL 160

Query: 88  MAKDRG 94
           M   RG
Sbjct: 161 MTIIRG 166

BLAST of ClCG11G010670 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 40  WKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKDRG-KGLSS 99
           WKLN +A+W     + GLGWV  DHL +V   GLKF+  C++V +LE +A   G + LSS
Sbjct: 77  WKLNMDASWNSKIDACGLGWVFLDHLYRVCMAGLKFVLRCQKVNILEAIAICFGLEILSS 136

Query: 100 VTYSHV 105
           +  S++
Sbjct: 137 IDISNI 142

BLAST of ClCG11G010670 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-04
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNT+AAW   T + G+GW+L D  G+V   G + I   + +  LE MA  
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMA-- 314

Query: 92  RGKGLSSVTYSH 104
             +GL ++   H
Sbjct: 315 ICEGLRAIRQEH 324

BLAST of ClCG11G010670 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNT+AAW   T +GG+GW+L D  G+V     + I   + +  LE MA  
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA-- 138

Query: 92  RGKGLSSVTYSHVHRRQNELAHC 115
             +GL ++   H    Q E  HC
Sbjct: 139 ICEGLRAIRQEHCRPIQQE--HC 157

BLAST of ClCG11G010670 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNTNAAW   T +GG+GW+L D  G+V     + I   + +  LE MA  
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA-- 138

Query: 92  RGKGLSSVTYSH 104
             +GL ++   H
Sbjct: 139 ICEGLRAIRQEH 148

BLAST of ClCG11G010670 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-05
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0

Query: 28  LTTSWIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEG 87
           L   W AP  +CWKLNT+A+W    + GG+GW+L D  G++   G   I   KE+  LE 
Sbjct: 101 LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALEL 160

Query: 88  MAKDRG 94
           M   RG
Sbjct: 161 MTIIRG 166

BLAST of ClCG11G010670 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNT+AAW   T + G+GW+L D  G+V   G + I   + +  LE MA  
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMA-- 314

Query: 92  RGKGLSSVTYSH 104
             +GL ++   H
Sbjct: 315 ICEGLRAIRQEH 324

BLAST of ClCG11G010670 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 0

Query: 32  WIAPIVSCWKLNTNAAWCLITKSGGLGWVLHDHLGQVYPVGLKFIAHCKEVKVLEGMAKD 91
           W  P  + WKLNT+AAW   T + G+GW+L D  G+V   G + I   + +  LE MA  
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMA-- 279

Query: 92  RGKGLSSVTYSH 104
             +GL ++   H
Sbjct: 280 ICEGLRAIRQEH 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156777.17.1e-0537.35uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143535.19.3e-0538.89uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022143317.11.2e-0442.42uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_038886170.11.2e-0443.94uncharacterized protein LOC120076417 [Benincasa hispida][more]
XP_022154990.14.6e-0437.50uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSV13.4e-0537.35uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP264.5e-0538.89uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1CQG05.9e-0542.42uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL642.2e-0437.50uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC92.2e-0437.50uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G010670.1ClCG11G010670.1mRNA