ClCG11G010565 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G010565
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotransposon protein
Location	CG_Chr11: 20409684 .. 20410460 (-)
RNA-Seq Expression	ClCG11G010565
Synteny	ClCG11G010565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACCGATGAGGAGGACCGAATCCTCGTAGAGTGTTTGGTCCAATGTGTTCAGTCCAGGCACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAGTAAAGGATTTTGGGATGTTCCATACAGGTAAGCTCACATTTGGAGTCAAGGGTCAGGACGTTGAAGAGACAGTACAGTGCGATTGCTGAAATGTTGGGCACAGGATGTAGTGGGTTTTGTTAGAATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGGTAATTTTCTTATTTCTTTTATTTATGTTTTTCTGTTTTAAATATGTCTTAGCCATAACACATTTCACCTTTGACAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

mRNA sequence

ATGGAAGCATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACCGATGAGGAGGACCGAATCCTCGTAGAGTGTTTGGTCCAATGTGTTCAGTCCAGGCACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAAATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

Coding sequence (CDS)

ATGGAAGCATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACCGATGAGGAGGACCGAATCCTCGTAGAGTGTTTGGTCCAATGTGTTCAGTCCAGGCACTGGCGAGCTGATAACGGGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAAATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

Protein sequence

MEASGSRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFYIPIHLLSTLPHQRTLQLPPTIEDLQVACHQEVGGPEVPRLESTATWFGRDSNF

Homology

[Close]

BLAST of ClCG11G010565 vs. NCBI nr
Match: KAA0054147.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-25
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +R  KH WT EE+  LVECLV+ V    WR+DNGTFRPG+L  + RMM          
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPVVLGG 62

Query: 66  QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGS 116
            M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+  FGKDRATG  A + V++GS
Sbjct: 63  MMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFVDIGS 122

[Close]

BLAST of ClCG11G010565 vs. NCBI nr
Match: KAA0035563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 9   RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------ 68
           RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM +    +V      
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMWRRNYLDVSGFGWN 65

Query: 69  ------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE 128
                 +   E+FD WV+SHP+AKGL +KSFP+YD+L   FG DRATG  A T  +VGS 
Sbjct: 66  DEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSN 125

Query: 129 PVVDEENEDILNNQSPDFENFY 139
                 +   + + + DF + Y
Sbjct: 126 EPGGGYDRFDMGDGNEDFSSVY 147

[Close]

BLAST of ClCG11G010565 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 69/172 (40.12%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM          
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  --------------------QMRSAN------------VLTVTEIFDAWVKSHPSAKGLR 125
                               +MR  +            ++   ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI 127
           HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDI 174

[Close]

BLAST of ClCG11G010565 vs. NCBI nr
Match: KAA0032859.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-24
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 9   RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN------- 68
           RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RMM  +          
Sbjct: 6   RALRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQGPACS 65

Query: 69  ----------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTV 116
                     ++   E+FD WV+SHP+AKGL +K FP+YD+L   FG+DRATG  A T  
Sbjct: 66  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 125

[Close]

BLAST of ClCG11G010565 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-24
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +R  KH WT EE+  LVECLV+ V +  WR+DNGTF PG+L  + RMM          
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFLPGYLNQLARMMAFKIPVVLGG 62

Query: 66  QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGS 116
            M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+  FGKDRATG  A +  ++GS
Sbjct: 63  MMKKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGS 122

[Close]

BLAST of ClCG11G010565 vs. ExPASy TrEMBL
Match: A0A5A7UHV9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00690 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +R  KH WT EE+  LVECLV+ V    WR+DNGTFRPG+L  + RMM          
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPVVLGG 62

Query: 66  QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGS 116
            M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+  FGKDRATG  A + V++GS
Sbjct: 63  MMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFVDIGS 122

[Close]

BLAST of ClCG11G010565 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 69/172 (40.12%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM          
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  --------------------QMRSAN------------VLTVTEIFDAWVKSHPSAKGLR 125
                               +MR  +            ++   ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI 127
           HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDI 174

[Close]

BLAST of ClCG11G010565 vs. ExPASy TrEMBL
Match: A0A5A7SYB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002330 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 9   RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------ 68
           RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM +    +V      
Sbjct: 6   RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMWRRNYLDVSGFGWN 65

Query: 69  ------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE 128
                 +   E+FD WV+SHP+AKGL +KSFP+YD+L   FG DRATG  A T  +VGS 
Sbjct: 66  DEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSN 125

Query: 129 PVVDEENEDILNNQSPDFENFY 139
                 +   + + + DF + Y
Sbjct: 126 EPGGGYDRFDMGDGNEDFSSVY 147

[Close]

BLAST of ClCG11G010565 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 69/172 (40.12%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 6   SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM---------- 65
           S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM          
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 66  --------------------QMRSAN------------VLTVTEIFDAWVKSHPSAKGLR 125
                               +MR  +            ++   ++FD+W+KSHP+AKGL 
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 126 HKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI 127
           HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDI 174

[Close]

BLAST of ClCG11G010565 vs. ExPASy TrEMBL
Match: A0A5A7SUL5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00220 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.7e-25
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 9   RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN------- 68
           RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RMM  +          
Sbjct: 6   RALRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQGPACS 65

Query: 69  ----------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTV 116
                     ++   E+FD WV+SHP+AKGL +K FP+YD+L   FG+DRATG  A T  
Sbjct: 66  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 125

[Close]

BLAST of ClCG11G010565 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 39/172 (22.67%), Postives = 75/172 (43.60%), Query Frame = 0


Query: 7   RARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTF-----RPGFLANI---------- 66
           R +   + W+ EE ++LV+ LV+ + + +WR  NGT         F+  I          
Sbjct: 9   RKKGDYNPWSPEETKLLVQLLVEGI-NNNWRDSNGTISKLTVETKFMPEINKEFCRSKNY 68

Query: 67  ------LRMMQMRSANVLTV-------------------TEIFDAWVKSHPSAKGLRHKS 126
                 ++ ++++  + L +                    E++  ++K+HP+ K LR+ +
Sbjct: 69  NHYLSRMKYLKIQYQSCLDLQRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDT 128

Query: 127 FPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY 139
           F F+D+L I FG+  ATG  A    +  ++ +     E+       DF+N Y
Sbjct: 129 FEFFDELQIIFGEGVATGKNAIGLCD-STDGLTYRAGENPRKEYVDDFDNVY 178

The following BLAST results are available for this feature:

BLAST of ClCG11G010565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054147.1	2.8e-25	50.83	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035563.1	4.7e-25	42.96	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441954.1	4.7e-25	40.12	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0032859.1	1.4e-24	45.97	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048280.1	1.8e-24	49.17	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG11G010565 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G010565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHV9	1.3e-25	50.83	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0H7	2.3e-25	40.12	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SYB2	2.3e-25	42.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B4L3	2.3e-25	40.12	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7SUL5	6.7e-25	45.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG11G010565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	2.4e-06	22.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 7..58
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 66..120
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 66..120 coord: 7..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G010565.1	ClCG11G010565.1	mRNA