ClCG11G010350 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G010350
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
LocationCG_Chr11: 19526040 .. 19526368 (+)
RNA-Seq ExpressionClCG11G010350
SyntenyClCG11G010350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGTGACTTTTAATGATTACGATTATTTCTTTTTTCCATGTAGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA

mRNA sequence

ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA

Coding sequence (CDS)

ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA

Protein sequence

MTQQLEPKTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFSEICSIIKITGINRRTGSSLLRQATSPHGMG
Homology
BLAST of ClCG11G010350 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 7   PKTLRDYFRP-IPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFS 66
           PK +RDYF+P +P +Q GI + P +VNNFE KPGLIQMA + AFRG + +DP++H+  F 
Sbjct: 54  PKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKHLRSFL 113

Query: 67  EICSIIKITGIN 78
           EIC  +K+ G++
Sbjct: 114 EICGTVKMNGVS 125

BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_023881727.1 (uncharacterized protein LOC111994101 [Quercus suber])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 33/79 (41.77%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 3  QQLEPKTLRDYFRPIPTAQL-GITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHI 62
          Q  +P+TL+DY RPI      GI     + NNFE KP LI M     F GS + DP  H+
Sbjct: 6  QNAQPRTLKDYVRPIVNDNYSGIRRQTINANNFELKPALINMVQQAQFSGSPLDDPNIHL 65

Query: 63 HFFSEICSIIKITGINRRT 81
            F EIC  +K+ G+   T
Sbjct: 66 AMFLEICDTVKMNGVTEDT 84

BLAST of ClCG11G010350 vs. NCBI nr
Match: PNX93836.1 (hypothetical protein L195_g016998, partial [Trifolium pratense])

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 4   QLEPKTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHF 63
           ++  +TLRDYF P       I + P   NNFE KPGLIQM  +  FRGS  +DP  H+  
Sbjct: 32  EIPRRTLRDYFTPSTNITTSIVNPPVQANNFELKPGLIQMIQNSTFRGSPTEDPNAHLKN 91

Query: 64  FSEICSIIKITGI 77
           F  +   +K  G+
Sbjct: 92  FIRVADSVKCNGV 104

BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_017423641.1 (PREDICTED: uncharacterized protein LOC108332854 [Vigna angularis])

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 3  QQLEPKTLRDYFRPIPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHI 62
          Q+L  KTLRDY  P P +  G I   P   NNFE KP L+Q+     F G++ +DP  H+
Sbjct: 4  QELVRKTLRDYSMPNPNSYQGIIVRPPIQANNFEIKPALLQVIQQNQFGGANSEDPNSHL 63

Query: 63 HFFSEICSIIKITGIN 78
            F  IC  +KI G++
Sbjct: 64 ENFLAICDTLKINGVS 79

BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_023903608.1 (uncharacterized protein LOC112015434 [Quercus suber])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0

Query: 3  QQLEPKTLRDYFRPIPTAQL-GITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHI 62
          Q  +P+T +DY RPI      G+     + NNFE KP LI M     F GS + DP  H+
Sbjct: 6  QNAQPRTFKDYVRPIVNDNYSGVRRQTTNANNFEIKPALINMVQQAQFSGSPLDDPNIHL 65

Query: 63 HFFSEICSIIKITGINRRT 81
            F EIC  +K+ G+   T
Sbjct: 66 AMFLEICDTVKMNGVTEYT 84

BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A2K3MSV7 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g016998 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 4   QLEPKTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHF 63
           ++  +TLRDYF P       I + P   NNFE KPGLIQM  +  FRGS  +DP  H+  
Sbjct: 32  EIPRRTLRDYFTPSTNITTSIVNPPVQANNFELKPGLIQMIQNSTFRGSPTEDPNAHLKN 91

Query: 64  FSEICSIIKITGI 77
           F  +   +K  G+
Sbjct: 92  FIRVADSVKCNGV 104

BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.1e-07
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 1   MTQQLEP-KTLRDYFRPIPTAQLG-ITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPY 60
           MT++  P KT+RDY  P P    G I   P   NNFE KP L+Q+     F G+  +DP 
Sbjct: 50  MTEEQNPRKTIRDYSMPDPNGYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGAVSEDPN 109

Query: 61  RHIHFFSEICSIIKITGIN 78
            H+  F  IC  +K  G++
Sbjct: 110 SHLENFLAICDTLKYNGVS 128

BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1B5Z9T0 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_424950 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0

Query: 8  KTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMA-GDYAFRGSSVKDPYRHIHFFSE 67
          +TLRDY  P       I + P   NNFE KPGLIQM      FRG+  +DP  H+  F  
Sbjct: 7  RTLRDYITPSTNITTSIVNPPVQANNFELKPGLIQMVHNSTMFRGAPTEDPNAHLKNFIR 66

Query: 68 ICSIIKITGI 77
          +   +K  G+
Sbjct: 67 VADSVKCNGV 76

BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1B5Z9P1 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_425320 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0

Query: 8  KTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMA-GDYAFRGSSVKDPYRHIHFFSE 67
          +TLRDY  P       I + P   NNFE KPGLIQM      FRG+  +DP  H+  F  
Sbjct: 7  RTLRDYITPSTNITTSIVNPPVQANNFELKPGLIQMVQNSTMFRGAPTEDPNAHLKNFIR 66

Query: 68 ICSIIKITGI 77
          +   +K  G+
Sbjct: 67 VADSVKCNGV 76

BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A6P6XAQ1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0

Query: 8  KTLRDYFRP-IPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFSE 67
          + LRD+  P    +Q  I     + NNFE KP LIQM     + G++ +DP  H+  F E
Sbjct: 9  RILRDFALPGAQGSQTSIVRPTVNANNFEIKPSLIQMVQQSQYGGNATEDPNSHLSTFLE 68

Query: 68 ICSIIKITGIN 78
          IC  IK  G++
Sbjct: 69 ICDTIKFNGVS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833153.11.1e-1452.78retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_023881727.12.0e-0841.77uncharacterized protein LOC111994101 [Quercus suber][more]
PNX93836.12.6e-0841.10hypothetical protein L195_g016998, partial [Trifolium pratense][more]
XP_017423641.19.9e-0842.11PREDICTED: uncharacterized protein LOC108332854 [Vigna angularis][more]
XP_023903608.11.3e-0739.24uncharacterized protein LOC112015434 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2K3MSV71.3e-0841.10Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g01699... [more]
A0A1S3UKD49.1e-0739.24uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
A0A1B5Z9T03.4e-0640.00Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX... [more]
A0A1B5Z9P13.4e-0640.00Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX... [more]
A0A6P6XAQ15.0e-0538.03Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G010350.1ClCG11G010350.1mRNA