ClCG11G010350 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGTGACTTTTAATGATTACGATTATTTCTTTTTTCCATGTAGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA ATGACTCAACAATTAGAACCCAAAACTCTTAGGGATTATTTCCGACCAATTCCAACTGCCCAACTTGGGATTACTCATGCACCCTTCGATGTTAACAACTTCGAGTTCAAACCTGGTCTCATCCAGATGGCAGGCGATTATGCATTTAGAGGGAGTTCAGTTAAGGACCCCTATAGGCATATACACTTCTTTTCGGAGATTTGCAGCATAATAAAGATAACAGGGATAAATCGAAGGACTGGCTCGAGTCTGTTACGCCAGGCAACATCACCACATGGGATGGGCTAA MTQQLEPKTLRDYFRPIPTAQLGITHAPFDVNNFEFKPGLIQMAGDYAFRGSSVKDPYRHIHFFSEICSIIKITGINRRTGSSLLRQATSPHGMG Homology
BLAST of ClCG11G010350 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14 Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_023881727.1 (uncharacterized protein LOC111994101 [Quercus suber]) HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08 Identity = 33/79 (41.77%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of ClCG11G010350 vs. NCBI nr
Match: PNX93836.1 (hypothetical protein L195_g016998, partial [Trifolium pratense]) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08 Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0
BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_017423641.1 (PREDICTED: uncharacterized protein LOC108332854 [Vigna angularis]) HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08 Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0
BLAST of ClCG11G010350 vs. NCBI nr
Match: XP_023903608.1 (uncharacterized protein LOC112015434 [Quercus suber]) HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07 Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0
BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A2K3MSV7 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g016998 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08 Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 0
BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 9.1e-07 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 0
BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1B5Z9T0 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_424950 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06 Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0
BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A1B5Z9P1 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_425320 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06 Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0
BLAST of ClCG11G010350 vs. ExPASy TrEMBL
Match: A0A6P6XAQ1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05 Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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