ClCG11G010230 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G010230
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	photosystem I reaction center subunit IV, chloroplastic-like
Location	CG_Chr11: 19033246 .. 19036204 (+)
RNA-Seq Expression	ClCG11G010230
Synteny	ClCG11G010230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTCAAACCCCATCTTCCAAAGCATTAACACTCAATCTCTCAAAGCTGCTTTCATCAGTTAAGGCATAGAAGAGAGATTCAAAGACAAAAGGCAATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGTGAGACCTTTTTTTCCTTTTTTTTTTTATTTAGTTCAAATCCAGATTAGGATTCCAACCTCTAATTTTTAACAAAATCTTGGCATGTATTTGAACAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGGTTGGACCCTTGAATTTTTATCTATTTATCATTTTTGTTTCTGGATGTGTGTGCAAATAGAAACTTTTTGGTTCTATTAATTTTTCATATTCTCATTTTATAGTGAGATTTGACACTCACAAAGTCAAGTGGGCTAAGATTTATGAGGGGAACTAAGTCAAGCCTGCTCTGTTTTTGGATTGAGGTTATCCAAATGTTATGAAATGGAAAATCAAACAATTTTAATGGTAAATTTTTTTTTACAATACGTGAGATGGAAGTTGGGGGATCAAACCTTAGATCGAGGTTGATAGTACAAATTCATGTTAGTTGAGCTATATTCATATTGATGACTAATTAATANAAAAAAAATCAAAAAAACTCAATAGATATAAGGGTTTATAGAAACAAGGTTATGGATGCTTATTTGAAATTAGCTTTAATTACTGTTTTTTCTCTCTCCTATCTCAATATGCTACAATTCATGTGTCATGAAATGTATATTTGTTGTAGTGTTACTTTCCTTTTGTTTACCTGTCAAAACTCACCCCCTTTATTGCTTTTCATATTTGAATTTAGCTTAGAAAAATTAAGTTCAACTCCTTATAGTTCAACCTAATTCATCGCTACATACTACTAATATTTAGTTTTAGATCAAGATTATAAATTTCATTTGGTGGTTAAATGTCTCGACAACTTTTGTGGCTAGTGAATTTTTGTGAAACTCAATTATAGAAATTTAAAACGATTAGAAAACTTATAACTAATTAGTACCAAGTGAATACTAAACTACAAAATTAGGAGCAAAAATGAACATTATGAAACCAAAGATCCGAAAATCAAAGATAATATATCTAGATCGAACATATGTTGCGCAACATATTTTCTTCGCAACATAAGCATAAATAAAATAAAACAGGGGAAAAAACACAAGACAAATGAATGTCAACATTTACTAAGAAACACAATTACTAAAAGAAACAAGCAACAGAAGAGAAGAAAAAAAAGAAAAGAGGAGAGAGAAAGAAAATATCCCAAGCAGAAAAGGATGAGCCTATCCTTAAGATATGGATATAGTGTCTACATGGCAACATTCAATTGGTTGAAACTCAACATTCAACTTTTCCATAGGCTGAGAAAATTCCAGCAAGAATTATTACCCATAAAACAACTGATTCTTTCTCCTTCAATATGTGGTTATCATTATTTCATTGGTTTATCTCTTATTATTCAAACCCCATCTTCCAAAGCATTAACACTCAATCTCTCAAAGCTGCTTTCATCAGTTAAGGCATAGAAGAGAGATTCAAAGACAAAAGGCAATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGTGAGACCTTTTTTTCCTTTTTTTTTTTATTTAGTTCAAATCCAGATTAGGATTCCAACCTCTAATTTTTAACAAAATCTTGGCATGTATTTGAACAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGGTTGGACCCTTGAATTTTTATCTATTTATCATTTTTGTTTCTGGATGTGTGTGCAAATAGAAACTTTTTGGTTCTATTAATTTTTCATATTCTCATTTTATAGTGAGATTTGACACTCACAAAGTCAAGTGGGCTAAGATTTATGAGGGGAACTAAGTCAAGCCTGCTCTGTTTTTGGATTGAGGTTATCCAAATGTTATGAAATGGAAAATCAAACAATTTTAATGGTAAATTTTTTTTTACAATACGTGAGATGGAAGTTGGGGGATCAAACCTTAGATCGAGGTTGATAGTACAAATTCATGTTAGTTGAGCTATATTCATATTGATGACTAATTAATAATAGCTTTCGAAATTTCATATTTTATTTTGCTTTTGAAGGTGAAAATTTGTAATTTATTAAACACATATGAAGTTTATATTACGGTTGATTTTTTCTTTTTCATTTTTTTTTTTTATAAAAAAAATGAATGTATGTATACTCATGCTTAATGCATAAATGATATTTTGCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTTTTATGTGCTTGTGTATTTTTGAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCAC

mRNA sequence

TATTATTCAAACCCCATCTTCCAAAGCATTAACACTCAATCTCTCAAAGCTGCTTTCATCAGTTAAGGCATAGAAGAGAGATTCAAAGACAAAAGGCAATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGTTAAGGCATAGAAGAGAGATTCAAAGACAAAAGGCAATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTTTTATGTGCTTGTGTATTTTTGAGTTAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTCCTCTCTCCAC

Coding sequence (CDS)

ATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGTTAAGGCATAGAAGAGAGATTCAAAGACAAAAGGCAATGGCTACCTCTAACCTTTCTTGCATTGCTTCTGGAGTGGTCATTCCCTCTTCAACCACCATCTCATCTTCCTCTTCTAGGTTATCTTCTCTCGCCTTCTTCCCCAAGAATTCCAACTCTGTTTCAAGATCATCTAGATTGGTTATCCGGGCTGCCGCCTCCGACGAGGCTGCTCCCCCACCTCCGGCTGCCGCTCCCGCTGCCGCCACCGCCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAAAGAGGTTCCAAGGTGAAGATTCTAAGGAAAGAATCCTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGATCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Protein sequence

MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPPPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQLRHRREIQRQKAMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPPPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Homology

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BLAST of ClCG11G010230 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-65
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 122 AMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAP 181
           AMA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIRAAASDEAAP
Sbjct: 2   AMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAP 61

Query: 182 PPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 241
           PPPAAAPAAATAEEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVV
Sbjct: 62  PPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 121

Query: 242 VRFNKVNYASVSTNNYALDEIEEVA 267
           VRFNKVNYASVSTNNYALDEIEEVA
Sbjct: 122 VRFNKVNYASVSTNNYALDEIEEVA 146

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BLAST of ClCG11G010230 vs. NCBI nr
Match: XP_038889433.1 (photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 255.0 bits (650), Expect = 7.2e-64
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPP 182
           MA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIRAAASDEAAPP
Sbjct: 1   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 60

Query: 183 PPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 242
           PPAAAPAAATAEEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 243 RFNKVNYASVSTNNYALDEIEEVA 267
           RF+KVNYASVSTNNYALDEIEEVA
Sbjct: 121 RFSKVNYASVSTNNYALDEIEEVA 144

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BLAST of ClCG11G010230 vs. NCBI nr
Match: KAE8651724.1 (hypothetical protein Csa_006032 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-60
Identity = 138/158 (87.34%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 109 DQLRHRREIQRQKAMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSR 168
           D  +H+R +    AMA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSR
Sbjct: 81  DHSKHKRAM----AMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSR 140

Query: 169 LVIRAAASDEAAPPPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVV 228
           LVIR  ASDEAAPPP A AP AAT EEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVV
Sbjct: 141 LVIR--ASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV 200

Query: 229 TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA 267
           TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 201 TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 232

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BLAST of ClCG11G010230 vs. NCBI nr
Match: XP_004152807.2 (photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.8e-60
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 122 AMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAP 181
           AMA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIR  ASDEAAP
Sbjct: 2   AMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIR--ASDEAAP 61

Query: 182 PPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 241
           PP A AP AAT EEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVV
Sbjct: 62  PPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 121

Query: 242 VRFNKVNYASVSTNNYALDEIEEVA 267
           VRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 122 VRFNKVNYASVSTNNYALDEIQEVA 144

[Close]

BLAST of ClCG11G010230 vs. NCBI nr
Match: KAA0061399.1 (photosystem I reaction center subunit IV [Cucumis melo var. makuwa] >TYK28659.1 photosystem I reaction center subunit IV [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-58
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 135 VVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPPPPAAAPAAATAE 194
           VVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIRAAASDEAAPPPPAAAPAAATAE
Sbjct: 10  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPPPPAAAPAAATAE 69

Query: 195 EPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 254
           EPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST
Sbjct: 70  EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 129

Query: 255 NNYALDEIEEVA 267
           NNYALDEIEEVA
Sbjct: 130 NNYALDEIEEVA 141

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BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-33
Identity = 87/147 (59.18%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRS-SRLVIRAAASDEAAP 182
           MA+S+++  ASG ++ +    +S+++  +S+ FF  + N+ + +  RLV+RAA  +EAAP
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAA--EEAAP 60

Query: 183 PPPAAAPAAATAEEP---KPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRY 242
           P   AA A A  E P     KP PIGPKRG+KV++LRKESYWYK VGSVV VDQDPNTRY
Sbjct: 61  P---AATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRY 120

Query: 243 PVVVRFNKVNYASVSTNNYALDEIEEV 266
           PVVVRFNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 PVVVRFNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.8e-32
Identity = 84/143 (58.74%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPP 182
           MA+ N++  AS  ++ +    S++++  +++ FF  + N  S + RLV+RAA  +EAAPP
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFF-SSKNYGSTAPRLVVRAA--EEAAPP 60

Query: 183 PPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 242
             AA    A A     KP PIGPKRG+KV+ILRKESYWYK  GSVV  DQDPNTRYPVVV
Sbjct: 61  AAAATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVV 120

Query: 243 RFNKVNYASVSTNNYALDEIEEV 266
           RFNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 RFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.4e-31
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 136 VIPSS-TTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRA------AASDEAAPPPPAAAP 195
           V+P++ T+++ +SS  SS++F P      +  SRLV+RA      A+S     P  AAAP
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 196 AAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 255
             ATA   KPKP PIGPKRGSKVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  DGATA--TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 256 YASVSTNNYALDEIEEVA 267
           YA++STNNYALDE+EEVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

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BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 82/123 (66.67%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 144 SSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPPPPAAAPAAATAEEPKPKPAPI 203
           SS + RL      P  + S  RS+RLV+RAA  +EAA  P AA+P    A +   KP PI
Sbjct: 6   SSVAVRLGLTQVLPNKNFSSPRSTRLVVRAA--EEAAAAPAAASP-EGEAPKAAAKPPPI 65

Query: 204 GPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIE 263
           GPKRGSKV+I+RKESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEI+
Sbjct: 66  GPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 125

Query: 264 EVA 267
           EVA
Sbjct: 126 EVA 125

[Close]

BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot
Match: P13194 (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 6.6e-28
Identity = 81/150 (54.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPP 182
           MA++N++   S  ++ +     ++    S ++F P N   +    +LV RA     AAP 
Sbjct: 1   MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLPSNRLGL----KLVARAEEPTAAAPA 60

Query: 183 PPAAA------PAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNT 242
            PA A       A AT E  K KP P GPKRG+KVKILR+ESYWY   GSVVTVDQDPNT
Sbjct: 61  EPAPAADEKPEAAVATKEPAKAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNT 120

Query: 243 RYPVVVRFNKVNYASVSTNNYALDEIEEVA 267
           RYPVVVRF KVNYA VSTNNYALDEI+EVA
Sbjct: 121 RYPVVVRFAKVNYAGVSTNNYALDEIKEVA 146

[Close]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 122 AMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAP 181
           AMA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIRAAASDEAAP
Sbjct: 2   AMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAP 61

Query: 182 PPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 241
           PPPAAAPAAATAEEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVV
Sbjct: 62  PPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 121

Query: 242 VRFNKVNYASVSTNNYALDEIEEVA 267
           VRFNKVNYASVSTNNYALDEIEEVA
Sbjct: 122 VRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 6.2e-61
Identity = 138/158 (87.34%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 109 DQLRHRREIQRQKAMATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSR 168
           D  +H+R +    AMA SNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSR
Sbjct: 69  DHSKHKRAM----AMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSR 128

Query: 169 LVIRAAASDEAAPPPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVV 228
           LVIR  ASDEAAPPP A AP AAT EEPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVV
Sbjct: 129 LVIR--ASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVV 188

Query: 229 TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA 267
           TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 189 TVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL
Match: A0A5A7V6V9 (Photosystem I reaction center subunit IV OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00230 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 135 VVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPPPPAAAPAAATAE 194
           VVIPSSTTISSSSSRLSSLAFFPKNSNS+SRSSRLVIRAAASDEAAPPPPAAAPAAATAE
Sbjct: 10  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPPPPAAAPAAATAE 69

Query: 195 EPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 254
           EPKPKPAPIGPKRG+KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST
Sbjct: 70  EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 129

Query: 255 NNYALDEIEEVA 267
           NNYALDEIEEVA
Sbjct: 130 NNYALDEIEEVA 141

[Close]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 4.3e-54
Identity = 125/144 (86.81%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPP 182
           MA SNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS S+SRS RLV+RAAA + AAPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 183 PPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 242
           P AAA A A AE PKPKPAPIGPKRG+KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 243 RFNKVNYASVSTNNYALDEIEEVA 267
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 124/144 (86.11%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 123 MATSNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRAAASDEAAPP 182
           MA SNLSCIASGV+IPSS TI SSSSR SS+AFFPKNS S+SRS RLV+RAAA + AAPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 183 PPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 242
           P AAA A A AE PKPKPAPIGPKRG+KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 243 RFNKVNYASVSTNNYALDEIEEVA 267
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of ClCG11G010230 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-32
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 136 VIPSS-TTISSSSSRLSSLAFFPKNSNSVSRSSRLVIRA------AASDEAAPPPPAAAP 195
           V+P++ T+++ +SS  SS++F P      +  SRLV+RA      A+S     P  AAAP
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 196 AAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 255
             ATA   KPKP PIGPKRGSKVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  DGATA--TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 256 YASVSTNNYALDEIEEVA 267
           YA++STNNYALDE+EEVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

[Close]

BLAST of ClCG11G010230 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-28
Identity = 82/148 (55.41%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 128 LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSVSRSSRLVIRAA-------ASD 187
           ++  A+G ++ ++   +    SS   + ++F P      S  SRLV+RAA       AS 
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMR----SFGSRLVVRAAEDTPPATASS 62

Query: 188 EAAPPPPAAAPAAATAEEPKPKPAPIGPKRGSKVKILRKESYWYKDVGSVVTVDQDPNTR 247
           +++    AAAPA   A   K KP PIGPKRGSKVKILRKESYWYK+VGSVV VDQDP TR
Sbjct: 63  DSSSTTAAAAPAKVPA--AKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTR 122

Query: 248 YPVVVRFNKVNYASVSTNNYALDEIEEV 266
           YPVVVRF KVNYA++STNNYALDE+EEV
Sbjct: 123 YPVVVRFAKVNYANISTNNYALDEVEEV 144

The following BLAST results are available for this feature:

BLAST of ClCG11G010230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441802.1	6.5e-65	97.93	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
XP_038889433.1	7.2e-64	97.22	photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]	[more]
KAE8651724.1	1.3e-60	87.34	hypothetical protein Csa_006032 [Cucumis sativus]	[more]
XP_004152807.2	4.8e-60	93.10	photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]	[more]
KAA0061399.1	1.2e-58	98.48	photosystem I reaction center subunit IV [Cucumis melo var. makuwa] >TYK28659.1 ...	[more]

BLAST of ClCG11G010230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41229	3.1e-33	59.18	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
Q41228	5.8e-32	58.74	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
Q9S831	6.4e-31	61.59	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
P12354	1.1e-30	66.67	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
P13194	6.6e-28	54.00	Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=45...	[more]

BLAST of ClCG11G010230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3T3	3.2e-65	97.93	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A0A0LJQ1	6.2e-61	87.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1	[more]
A0A5A7V6V9	5.8e-59	98.48	Photosystem I reaction center subunit IV OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1FC09	4.3e-54	86.81	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1HLT8	2.8e-53	86.11	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima...	[more]

BLAST of ClCG11G010230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28750.1	4.5e-32	61.59	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	1.4e-28	55.41	photosystem I subunit E-2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.50		coord: 77..117 e-value: 4.9E-16 score: 60.0 coord: 199..266 e-value: 2.0E-36 score: 125.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..208
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 123..265
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 1..110
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 206..265 e-value: 2.3E-30 score: 104.1 coord: 84..110 e-value: 6.5E-13 score: 48.2
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 1..110
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 123..265
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 83..113
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 205..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G010230.1	ClCG11G010230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I