ClCG11G009955 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G009955
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed DNA polymerase
Location	CG_Chr11: 17228726 .. 17229094 (+)
RNA-Seq Expression	ClCG11G009955
Synteny	ClCG11G009955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATGGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

mRNA sequence

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATGGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

Coding sequence (CDS)

ATGGATTTTGAGAAAGCCTGTGAGAAACGCGTTTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTTATAAGAATGCCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACATCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGTAAGCTTAGGACACGATGGTCGGGACCCTTTGTTATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTACAAGGTAACAATGGAACAACTTTTAAAGTGAATGGTCAACGATTAAAGCACTACATACGGGATGAAGAACGCAGACTTGAGAACCTGACTTTTATTGCATGA

Protein sequence

MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYIRDEERRLENLTFIA

Homology

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BLAST of ClCG11G009955 vs. NCBI nr
Match: WP_217833156.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           MDFEKA EKR+LELNEMEEFRAQAY+NAKLYK+RTARWHDKKIT  TFLP QR+LLFNSR
Sbjct: 473 MDFEKAGEKRLLELNEMEEFRAQAYENAKLYKKRTARWHDKKITPGTFLPRQRLLLFNSR 532

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYIRDEERRLENLTF 120
           LRLFPGKLRTRWSGPF+IVKVSPHGAVELQGNNGTTFKVNG RLKHYI DEER LENL F
Sbjct: 533 LRLFPGKLRTRWSGPFIIVKVSPHGAVELQGNNGTTFKVNGLRLKHYIGDEERVLENLAF 592

Query: 121 IA 123
            A
Sbjct: 593 TA 594

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BLAST of ClCG11G009955 vs. NCBI nr
Match: XP_038885822.1 (uncharacterized protein LOC120076116 [Benincasa hispida])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 87/117 (74.36%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 4   EKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRL 63
           +K  EKR+LEL E+EEF  QAY+NAKLYKER ARWHDKKI   TF  GQ VLLFNSRLRL
Sbjct: 46  QKVGEKRLLELAELEEFHDQAYENAKLYKERIARWHDKKIIHHTFDLGQSVLLFNSRLRL 105

Query: 64  FPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYIRDEERRLENLTF 121
           FP KLRTRW GPFV+VK SPHGAVE+QG +G  FKVNGQRL+HY  DEER+LENL F
Sbjct: 106 FPSKLRTRWLGPFVVVKDSPHGAVEVQGEDGLRFKVNGQRLEHYCGDEERKLENLVF 162

[Close]

BLAST of ClCG11G009955 vs. NCBI nr
Match: XP_038885946.1 (uncharacterized protein LOC120076251 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.9e-36
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 2   DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
           D + A + R+L+LNEMEEF+ QAY+N+K+YKERT +WHD  I  R FLPGQRVLLFNSRL
Sbjct: 40  DLQIAGKHRLLQLNEMEEFQNQAYENSKIYKERTTKWHDNWIVPRAFLPGQRVLLFNSRL 99

Query: 62  RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYIRDEE 113
           RLFPGKL++RW GPFVI  V+P+ AVEL G +GTTFKVN QRLKHY  DEE
Sbjct: 100 RLFPGKLKSRWFGPFVIKDVTPYDAVELHGKDGTTFKVNAQRLKHYCGDEE 150

[Close]

BLAST of ClCG11G009955 vs. NCBI nr
Match: XP_030498073.1 (uncharacterized protein LOC115713732 [Cannabis sativa])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 71/108 (65.74%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           M+ + A EKR+L+LNE+EEFR +AY+NAK+YKERT +WHD+ +  + F PGQ+VLLFNSR
Sbjct: 427 MELKAAGEKRLLQLNELEEFRNEAYENAKIYKERTKKWHDQGLVRKEFQPGQQVLLFNSR 486

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYI 109
           L+LFPGKL++RWSGPF +VKV P+GAVEL+G+   TFKVNGQRLK Y+
Sbjct: 487 LKLFPGKLKSRWSGPFTVVKVFPYGAVELKGDGPATFKVNGQRLKFYL 534

[Close]

BLAST of ClCG11G009955 vs. NCBI nr
Match: XP_030504949.1 (uncharacterized protein LOC115719915 [Cannabis sativa])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 71/108 (65.74%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           M+ + A EKR+L+LNE++EFR +AY+NAK+YKERT +WHD+ +  + F PGQ+VLLFNSR
Sbjct: 31  MELKAAWEKRLLQLNELDEFRNEAYENAKIYKERTKKWHDQGLIRKQFQPGQQVLLFNSR 90

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYI 109
           L+LFPGKL++RWSGPF +VKV P+GAVEL+G + TTFKVNGQRLK Y+
Sbjct: 91  LKLFPGKLKSRWSGPFTVVKVFPYGAVELKGESPTTFKVNGQRLKLYL 138

[Close]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL
Match: A0A2G9H400 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15163 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.0e-34
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 2    DFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRL 61
            D + A EKR+L+LNE++EFR QAY+NAK+YKE+T RWHDKKI  R F PGQ VLLFNSRL
Sbjct: 1282 DMQVAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYVLLFNSRL 1341

Query: 62   RLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNGQRLKHY 108
            +LFPGKL++RWSGPF I +V PHGAVEL+  N    FKVN QR+KHY
Sbjct: 1342 KLFPGKLKSRWSGPFRITEVFPHGAVELENKNSRNRFKVNAQRIKHY 1388

[Close]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL
Match: A0A1S4DFS8 (uncharacterized protein LOC107829365 OS=Nicotiana tabacum OX=4097 GN=LOC107829365 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.6e-34
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           MD + A EKR+L+LNE++EFR  AY+NAKLYK +T RWHDK I  R F PGQ VLLFNSR
Sbjct: 396 MDGDLAGEKRLLQLNELDEFRLHAYENAKLYKVKTKRWHDKHIQHREFEPGQEVLLFNSR 455

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNGT-TFKVNGQRLKHY 108
           L+LFPGKL++RWSGPFV+V V PHGAVEL+  + T TF VNGQR+KHY
Sbjct: 456 LKLFPGKLKSRWSGPFVVVSVKPHGAVELRDMSSTGTFLVNGQRIKHY 503

[Close]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL
Match: A0A6P4D1N6 (uncharacterized protein LOC107484509 OS=Arachis duranensis OX=130453 GN=LOC107484509 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           +D + A EKR+L+LNE+EEFR +AY+NA++YKER  RWHDK+I+ RTF PGQRVLLFNSR
Sbjct: 126 LDAQAAGEKRLLQLNELEEFRLEAYENARIYKERAKRWHDKRISQRTFEPGQRVLLFNSR 185

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGN-NGTTFKVNGQRLKHYIRDE 112
           L++FPGKLR+RW+GP+ I+KVSPHG VEL    +  TF  NG R+KHY   E
Sbjct: 186 LKIFPGKLRSRWTGPYTIIKVSPHGYVELLDEASKQTFTANGHRVKHYFGGE 237

[Close]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL
Match: A0A1U8BL36 (uncharacterized protein LOC104612034 OS=Nelumbo nucifera OX=4432 GN=LOC104612034 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 6   ACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFP 65
           A +KR L+LNEMEE+R QAY+NA+ YKE+T  WHD +I  + F  G +V LFNSRL LFP
Sbjct: 505 ASDKRKLQLNEMEEWRNQAYENARTYKEKTKAWHDSRIARKEFKEGDKVXLFNSRLNLFP 564

Query: 66  GKLRTRWSGPFVIVKVSPHGAVELQGNNGTTFKVNGQRLKHYIRDE 112
           GKL+TRWSGPFV+ KV PHGA+EL+   G TFKVNGQRLKHYI  E
Sbjct: 565 GKLKTRWSGPFVVAKVFPHGALELRNGKGDTFKVNGQRLKHYIEGE 610

[Close]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL
Match: A0A1U7YB01 (uncharacterized protein LOC104243015 OS=Nicotiana sylvestris OX=4096 GN=LOC104243015 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MDFEKACEKRVLELNEMEEFRAQAYKNAKLYKERTARWHDKKITSRTFLPGQRVLLFNSR 60
           MD E ACEKR+++LNE++EF+  +Y+NAKLYKE T RWHDK I  R F PGQ VLLFNSR
Sbjct: 1   MDLEAACEKRLMQLNELDEFKLHSYENAKLYKENTKRWHDKHIKPRHFEPGQHVLLFNSR 60

Query: 61  LRLFPGKLRTRWSGPFVIVKVSPHGAVELQGNNG-TTFKVNGQRLKHY 108
           L+LFPGKL++RWSGPF +V+V+P+GA+EL+  NG   F VNG R+KHY
Sbjct: 61  LQLFPGKLKSRWSGPFEVVRVTPYGAIELRALNGERKFLVNGHRVKHY 108

The following BLAST results are available for this feature:

BLAST of ClCG11G009955 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833156.1	1.5e-53	88.52	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_038885822.1	1.5e-40	74.36	uncharacterized protein LOC120076116 [Benincasa hispida]	[more]
XP_038885946.1	2.9e-36	69.37	uncharacterized protein LOC120076251 [Benincasa hispida]	[more]
XP_030498073.1	1.2e-34	65.74	uncharacterized protein LOC115713732 [Cannabis sativa]	[more]
XP_030504949.1	1.2e-34	65.74	uncharacterized protein LOC115719915 [Cannabis sativa]	[more]

BLAST of ClCG11G009955 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G009955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9H400	5.0e-34	68.22	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15163 PE=...	[more]
A0A1S4DFS8	8.6e-34	68.52	uncharacterized protein LOC107829365 OS=Nicotiana tabacum OX=4097 GN=LOC10782936...	[more]
A0A6P4D1N6	1.1e-33	63.39	uncharacterized protein LOC107484509 OS=Arachis duranensis OX=130453 GN=LOC10748...	[more]
A0A1U8BL36	1.9e-33	66.04	uncharacterized protein LOC104612034 OS=Nelumbo nucifera OX=4432 GN=LOC104612034...	[more]
A0A1U7YB01	1.9e-33	64.81	uncharacterized protein LOC104243015 OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]

BLAST of ClCG11G009955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..95
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 9..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G009955.1	ClCG11G009955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding