ClCG11G008490 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G008490
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDrebrin-like
LocationCG_Chr11: 12184600 .. 12186964 (-)
RNA-Seq ExpressionClCG11G008490
SyntenyClCG11G008490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAGGAACTTGTGAAGGCATTGATGATGACGGTCATGGCTAGGACCGAGATTCGACACTGCACAAGATGGTCAGAGGGTTGGAAGGACCTAGTTTCTGAGCCTGTGGTGGGGATTTCCTCGTGGGATGGTCAAGGGGCAACCAGAGCCTAGTTTCTAAGCCTACGAGAAGTACCGAGAGGATGGTCAGGGGGCCGACGAGCCTAGCTCCTAAGCCTTAAAGGTAAGACTCTATGCACGTAGGGGACATAGGGACAGAAACGATGAGTTTAGCTAAGCTGGGTTGGCCAGCAAGAAAAACCAGTCAGGATTGCTGTGCCGTGTGAGCTAGCAAGATAAACAGAGGAGTTGCTGTGTTGGGGGTGCCAGCAGGAAAAAGATGATTCTGAGGATAACCCTATGGGAGAGGTTTGAGTATAAGCTCAAAAAAGTTTGTAGATATACTTGCGCATGATTCGTATTATGAGTATTATGATTATTATTATAATGCTGAAAGGGTTGGTTGAACCCTAGTTTATTCAATCACTCACTAGGCTTTATTGAAGCTCATCATTTTCTTATGTTTTTCTTTCTAGGTAGCAACCGAGTTTCGTTGCTGTGCAAAGTCAAGGTCTGCCGAGAAATTATGTGCACTTAGTTATAGGCGACAGCTAGAATAAGAAACTAGAAACATGTCTTCTGTAAACAAACGTGTTAAACAGTTGTAATAATATTAACTTAAGCATATTTTATATGAATTAGTTTCTTCCTCTCTATGTAAGTTGCACAGGTCAGGTTTAGAAAGGGGTAAAGGTTTGGCGGTAGATGTCGTAAGAGGGTCGGCATCTGCTATCCTCACGCTCTATCTCGGGCTACAGAGAGGGGTGGCTCGGGGCGGGGTGTGACACATCAAGACGTTGCCTTCCAACTTCCTTCTGCCTGAGGCTAACCTGTGGGTGTACTTTGTGAAGAAGCGGCTCATTCACACCACGCACAACAAAATAGTTTCTAGAGAACGAGTGATGACAGCCTATTGCATCATGCAATGCATCTCCCTGAATGTCGGACGCATCATTGCCGCACAGATCATAAGTATCTTCAGCAAGCCTCGGAGACAACTATTCTTCCCTTGGCTGATAATGGGACTATGTGCGAATGTTGTCCTCTTGAGCGGTACCTTTTTAGTGGATAGTGAGCCAATCGTGCCAGTGAATGGGGTTATGATGCAAGCCGCAAGTGCACGGGTCAAGTTATAATATAAGATGGTCAAAGTCTGAATATCATTCCATTGAGGATCCAATTATGAGAGTTTAAATTATTTAGCTATTCTAGAGTTGAGTCAATTTTATTTGAGGATTCGAGTTCAAGTTGTGATTGAGAAACCAAATAAGGAAAGCGACTAAAAGTGAAAGTAAAGAGTCAAAGGGAGTTATAGGGTATTGAATTCTTGTTTAATCCATTATGCAACATTCTAGGGTTCATCGAATTAATTGCACCTCAAATGCTTAAGTCTAGAAACATAAATCCGAGTTATTTTCTATAAAGAAACAACATTTTCTCATGCAACCTAATTGATTACTAACATCGTGAAATCAAGTTAAATCACATGACATTAAGATTAGTCGTTAGCAATTTTCATTATTAACCTAACTATGTCCATGAGAGATTAGTAACTATTCATCGTTATAGATCCGATTAGACATGCAATACCTTAAATCATACATCTAATCTAGCAAACATGGATGGCCAATCAACAAGAGTTAAGAACAACAACAATGAAAAACATACTTATTACAACATTCCAGGAAAAGTCTACAACATTAGCATATAACTACATAAGCAACTCATCAATACCCTTAAACTGAAGAGTTTAGCCACTCATAGCTTTAGACAACATGTTCAAGACAAATTTCAGCATAGAAAGAGTGTAAAGAAAGGAAAACTTTACTGTAAAGAAGCCCTTGATTGAGGAGGAGCTGCCAAGACCTCCTTGATCTTCACGTTGGGAACTTAAATGACACCAAACTCTCTCTCAAACTCTTTTCTCTCTTCCTTGCAGTCAACTCACTCTTTGAGGCTTTGTATTTCCTGATTAGGGTTATTGGAAACCCCTCAATATATAGACTTGGCCACCCAAAATTCTTTCCAAAATTGAAGATTTTTTTATTTTAGGAAAGCTGGTGTCGTTGAGCTCTTAAAAAGTGCAACGACGTTGCCCATCATGGAAGGTTGGTTTCAAGCACTGCGACGTTCTTCGCACAATGCAATGACGCTCTATCCCAGCGATGCTACGCCCCTTCTACTGCCAATTTTTTATGTTCTTGGGTTTAGAGCACAGCAAGGCAGCGTTGCTACGTTCACGGCTGTGTTGCCCTGTTTTTAG

mRNA sequence

ATGCCGAAGGAACTTGTGAAGGCATTGATGATGACGGTCATGGCTAGGACCGAGATTCGACACTGCACAAGATGGTCAGAGGGTTGGAAGGACCTAGTTTCTGAGCCTGTGGTGGGGATTTCCTCGTGGGATGGGGACATAGGGACAGAAACGATGAGTTTAGCTAAGCTGGGTTGGCCAGCAAGAAAAACCAGTCAGGATTGCTGTGCCGTCAGGAAAAAGATGATTCTGAGGATAACCCTATGGGAGAGGTTTGAGTATAAGCTCAAAAAAGTAGCAACCGAGTTTCGTTGCTGTGCAAAGTCAAGGTCAGGTTTAGAAAGGGGTAAAGGTTTGGCGGTAGATGTCGTAAGAGGGTCGGCATCTGCTATCCTCACGCTCTATCTCGGGCTACAGAGAGGGACGTTGCCTTCCAACTTCCTTCTGCCTGAGGCTAACCTGTGGGTGTACTTTGTGAAGAAGCGGCTCATTCACACCACGCACAACAAAATAGTTTCTAGAGAACGAGTGATGACAGCCTATTGCATCATGCAATGCATCTCCCTGAATGTCGGACGCATCATTGCCGCACAGATCATAAGTATCTTCAGCAAGCCTCGGAGACAACTATTCTTCCCTTGGCTGATAATGGGACTATGTGCGAATGTTGTCCTCTTGAGCGGTACCTTTTTAGTGGATAGTGAGCCAATCGTGCCAGTGAATGGGGTTATGATGCAAGCCGCAAGTGCACGGCTCTTAAAAAGTGCAACGACGTTGCCCATCATGGAAGGTTGGTTTCAAGCACTGCGACGTTCTTCGCACAATGCAATGACGCTCTATCCCAGCGATGCTACGCCCCTTCTACTGCCAATTTTTTATGTTCTTGGGTTTAGAGCACAGCAAGGCAGCGTTGCTACGTTCACGGCTGTGTTGCCCTGTTTTTAG

Coding sequence (CDS)

ATGCCGAAGGAACTTGTGAAGGCATTGATGATGACGGTCATGGCTAGGACCGAGATTCGACACTGCACAAGATGGTCAGAGGGTTGGAAGGACCTAGTTTCTGAGCCTGTGGTGGGGATTTCCTCGTGGGATGGGGACATAGGGACAGAAACGATGAGTTTAGCTAAGCTGGGTTGGCCAGCAAGAAAAACCAGTCAGGATTGCTGTGCCGTCAGGAAAAAGATGATTCTGAGGATAACCCTATGGGAGAGGTTTGAGTATAAGCTCAAAAAAGTAGCAACCGAGTTTCGTTGCTGTGCAAAGTCAAGGTCAGGTTTAGAAAGGGGTAAAGGTTTGGCGGTAGATGTCGTAAGAGGGTCGGCATCTGCTATCCTCACGCTCTATCTCGGGCTACAGAGAGGGACGTTGCCTTCCAACTTCCTTCTGCCTGAGGCTAACCTGTGGGTGTACTTTGTGAAGAAGCGGCTCATTCACACCACGCACAACAAAATAGTTTCTAGAGAACGAGTGATGACAGCCTATTGCATCATGCAATGCATCTCCCTGAATGTCGGACGCATCATTGCCGCACAGATCATAAGTATCTTCAGCAAGCCTCGGAGACAACTATTCTTCCCTTGGCTGATAATGGGACTATGTGCGAATGTTGTCCTCTTGAGCGGTACCTTTTTAGTGGATAGTGAGCCAATCGTGCCAGTGAATGGGGTTATGATGCAAGCCGCAAGTGCACGGCTCTTAAAAAGTGCAACGACGTTGCCCATCATGGAAGGTTGGTTTCAAGCACTGCGACGTTCTTCGCACAATGCAATGACGCTCTATCCCAGCGATGCTACGCCCCTTCTACTGCCAATTTTTTATGTTCTTGGGTTTAGAGCACAGCAAGGCAGCGTTGCTACGTTCACGGCTGTGTTGCCCTGTTTTTAG

Protein sequence

MPKELVKALMMTVMARTEIRHCTRWSEGWKDLVSEPVVGISSWDGDIGTETMSLAKLGWPARKTSQDCCAVRKKMILRITLWERFEYKLKKVATEFRCCAKSRSGLERGKGLAVDVVRGSASAILTLYLGLQRGTLPSNFLLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPRRQLFFPWLIMGLCANVVLLSGTFLVDSEPIVPVNGVMMQAASARLLKSATTLPIMEGWFQALRRSSHNAMTLYPSDATPLLLPIFYVLGFRAQQGSVATFTAVLPCF
Homology
[Close]
BLAST of ClCG11G008490 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-09
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 135 TLPSNFLLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIIS 194
           TL S+ LLPEA LWVY VK+R+I T+H+K VSR+RVM AYCI   I ++V  +IAAQ   
Sbjct: 294 TLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCIACGILIDVSHLIAAQAKE 353

Query: 195 IFSKPRRQ 203
              + +RQ
Sbjct: 354 AAQRKQRQ 361

[Close]
BLAST of ClCG11G008490 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-09
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 135 TLPSNFLLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQI 193
           TL S  LL E  LWVY VKKRLI TTH+K VSR+RVM  YCI++ I ++VG++IA Q+
Sbjct: 355 TLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCIVRSIPIDVGQLIARQL 412

[Close]
BLAST of ClCG11G008490 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-08
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH K VS++R++  Y ++   S+NVGR+I ++I +  ++  
Sbjct: 41  LTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKS 100

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPIVPVNGVMMQAASARLLKSATT 252
             LFFP LI  LC N       FLV+ E +  + G +   A AR+ +   T
Sbjct: 101 GALFFPSLITQLCRNA---RAPFLVNEEKL-HITGEIDAIAVARITQEGQT 147

[Close]
BLAST of ClCG11G008490 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K  L+ TTH KIVS+ERV+  Y ++   S+NVGR+I  +I +  ++  
Sbjct: 118 LNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYSMLTGKSINVGRMIHREICACAARKS 177

Query: 201 RQLFFPWLIMGLCAN 216
           R LFFP LI  +C N
Sbjct: 178 RALFFPSLITRMCRN 192

[Close]
BLAST of ClCG11G008490 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-08
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH KIVS+ERV+  Y ++   S+N+GR+I  +I +  ++  
Sbjct: 87  LNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAARKS 146

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPI 231
             LFFP LI+ +C N       +LV+ E +
Sbjct: 147 GALFFPSLIIRMCRNA---RAPYLVNEEKL 173

[Close]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH K VS++R++  Y ++   S+NVGR+I ++I +  ++  
Sbjct: 41  LTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKS 100

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPIVPVNGVMMQAASARLLKSATT 252
             LFFP LI  LC N       FLV+ E +  + G +   A AR+ +   T
Sbjct: 101 GALFFPSLITQLCRNA---RAPFLVNEEKL-HITGEIDAIAVARITQEGQT 147

[Close]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match: A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH KIVS+ERV+  Y ++   S+N+GR+I  +I +  ++  
Sbjct: 87  LNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAARKS 146

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPI 231
             LFFP LI+ +C N       +LV+ E +
Sbjct: 147 GALFFPSLIIRMCRNA---RAPYLVNEEKL 173

[Close]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match: A0A2P5B5S0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_268850 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K  L+ TTH KIVS+ERV+  Y ++   S+NVGR+I  +I +  ++  
Sbjct: 118 LNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYSMLTGKSINVGRMIHREICACAARKS 177

Query: 201 RQLFFPWLIMGLCAN 216
           R LFFP LI  +C N
Sbjct: 178 RALFFPSLITRMCRN 192

[Close]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-08
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH K VS+ERV+  Y ++   S+NVG+II  +I +  ++  
Sbjct: 77  LNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKS 136

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPI 231
             LFFP LI  +C N       +LV+ E +
Sbjct: 137 GALFFPSLITRMCCNA---RAPYLVNEEKL 163

[Close]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-08
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 141 LLPEANLWVYFVKKRLIHTTHNKIVSRERVMTAYCIMQCISLNVGRIIAAQIISIFSKPR 200
           L P A +W +F+K RL+ TTH KIVS++R++  + ++   S+NVGR+I ++I +  ++  
Sbjct: 100 LTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKT 159

Query: 201 RQLFFPWLIMGLCANVVLLSGTFLVDSEPI 231
             LFFP LI  LC N       FLV+ E +
Sbjct: 160 GALFFPSLITRLCRN-----APFLVNEEKL 184

The following BLAST results are available for this feature:
BLAST of ClCG11G008490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904385.14.5e-0954.41uncharacterized protein LOC120090747 [Benincasa hispida][more]
XP_038876674.17.6e-0960.34chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
PON59596.12.9e-0836.94hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON44141.13.8e-0845.33hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
PON50458.13.8e-0840.00hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
BLAST of ClCG11G008490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5CEY21.4e-0836.94Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5BNT01.8e-0840.00Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5B5S01.8e-0845.33Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_268850 PE... [more]
A0A2P5CPE87.0e-0840.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... [more]
A0A2P5DXM37.0e-0840.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
BLAST of ClCG11G008490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008490.1ClCG11G008490.1mRNA