ClCG11G008395 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G008395
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr11: 11860313 .. 11860666 (-)
RNA-Seq Expression	ClCG11G008395
Synteny	ClCG11G008395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGCTAAACTTCTACTTCAAAGTCTTCCTGACTTGTTTGATCAACTTTGTCATCAATCTAACAAATAATGTTCTCACCGACTACCTAAGCTTTGATGATATTGTAGCTGCTGTTCTAAAAGATAAAAATCAATGCAAGAACAACAAAGAAAAGTTGGTAAGTTCACAACAAGCAAAAGCATTGATGGTGACAAGAAGCATGTCAGCGGAGTGTGGCTCAACTGGGAGCCAAAATCAAGGAAGGTCAAAATCAAGAAGTAAGAAGAACATGAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGGATTGTTGGAATCTAAACAAGAAAGATTCCAATCCTTAG

mRNA sequence

ATGAACATGCTAAACTTCTACTTCAAAGTCTTCCTGACTTGTTTGATCAACTTTGTCATCAATCTAACAAATAATGTTCTCACCGACTACCTAAGCTTTGATGATATTGTAGCTGCTGTTCTAAAAGATAAAAATCAATGCAAGAACAACAAAGAAAAGTTGGTAAGTTCACAACAAGCAAAAGCATTGATGGTGACAAGAAGCATGTCAGCGGAGTGTGGCTCAACTGGGAGCCAAAATCAAGGAAGGTCAAAATCAAGAAGTAAGAAGAACATGAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGGATTGTTGGAATCTAAACAAGAAAGATTCCAATCCTTAG

Coding sequence (CDS)

ATGAACATGCTAAACTTCTACTTCAAAGTCTTCCTGACTTGTTTGATCAACTTTGTCATCAATCTAACAAATAATGTTCTCACCGACTACCTAAGCTTTGATGATATTGTAGCTGCTGTTCTAAAAGATAAAAATCAATGCAAGAACAACAAAGAAAAGTTGGTAAGTTCACAACAAGCAAAAGCATTGATGGTGACAAGAAGCATGTCAGCGGAGTGTGGCTCAACTGGGAGCCAAAATCAAGGAAGGTCAAAATCAAGAAGTAAGAAGAACATGAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGGATTGTTGGAATCTAAACAAGAAAGATTCCAATCCTTAG

Protein sequence

MNMLNFYFKVFLTCLINFVINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGSQNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP

Homology

[Close]

BLAST of ClCG11G008395 vs. NCBI nr
Match: TYK16527.1 (hypothetical protein E5676_scaffold21G003420 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           VINLTNN+LTDYLSFDD+VA VL+++N+CKN ++KLVSSQQA+ L VTR    EC S+GS
Sbjct: 156 VINLTNNILTDYLSFDDVVATVLEEENRCKNKEDKLVSSQQAEVLTVTRVRPLECNSSGS 215

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +NQGRSKS+SKKNMKCYNCGKKGH+KK+CWNLNKKDSNP
Sbjct: 216 KNQGRSKSQSKKNMKCYNCGKKGHVKKNCWNLNKKDSNP 254

[Close]

BLAST of ClCG11G008395 vs. NCBI nr
Match: KAA0044949.1 (hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           VINLTNN+LTDYLSFDD+ A VL+++N+CKN ++KLVSSQQA+AL VTR    EC S+GS
Sbjct: 156 VINLTNNILTDYLSFDDVAATVLEEENRCKNKEDKLVSSQQAEALTVTRVRPLECNSSGS 215

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +NQGRSKS+SKK MKCYNCGKKGH+KK+CW+LNKKD NP
Sbjct: 216 KNQGRSKSQSKKKMKCYNCGKKGHVKKNCWDLNKKDFNP 254

[Close]

BLAST of ClCG11G008395 vs. NCBI nr
Match: KAF2314531.1 (hypothetical protein GH714_027382 [Hevea brasiliensis])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           +INLTNN+LTDYL F+D+ AAVL+++++ KN ++KL +SQQ +AL++ R  S E GS+GS
Sbjct: 214 IINLTNNILTDYLVFNDVAAAVLEEESRRKNKEDKLFTSQQTEALLMMRGRSMEHGSSGS 273

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNK 113
           QN  RSKSRSKKN KCY+CGK+GH+KKDCW+  K
Sbjct: 274 QNHSRSKSRSKKNFKCYHCGKRGHVKKDCWHYKK 307

[Close]

BLAST of ClCG11G008395 vs. NCBI nr
Match: TYK21892.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 15  LINFVINLTNNVLT------------DYLS--FDDIVAAVLKDKNQCKNNKEKLVSSQQA 74
           + N  + L +NVL+            D+L+  FDD+VAAVL+++N+ KN ++KLVSSQQA
Sbjct: 22  MANIHLALADNVLSSIKEKKTALEIWDHLTKLFDDVVAAVLEEENRHKNKEDKLVSSQQA 81

Query: 75  KALMVTRSMSAECGSTGSQNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +AL+V +    +  S+GS+NQGRSKSRSKKNMKCYNCGKKGHLKK+CWNLNKK SNP
Sbjct: 82  EALIVKKGRPLKHNSSGSKNQGRSKSRSKKNMKCYNCGKKGHLKKNCWNLNKKYSNP 138

[Close]

BLAST of ClCG11G008395 vs. NCBI nr
Match: KAE8706559.1 (hypothetical protein F3Y22_tig00110392pilonHSYRG00193 [Hibiscus syriacus])

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-23
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   NMLNFYFKVFLTCLINFVINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAK 61
           N+LNFYFKV+   +    INLTN+ +T  L FDD+ AAVL+++N+ KN +++ V+ QQA+
Sbjct: 263 NVLNFYFKVYRIRM----INLTNSNVTS-LVFDDVTAAVLQEENRRKNKEDRQVNLQQAE 322

Query: 62  ALMVTRSMSAECGSTGSQNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           AL   R  S ECG + S   GRSKSRSK N+KCYNCG KGHLKKDCW+LN K+SNP
Sbjct: 323 ALTTMRGRSTECGQSSSHKHGRSKSRSKNNLKCYNCGTKGHLKKDCWSLN-KNSNP 372

[Close]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL
Match: A0A5D3CXA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003420 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.7e-35
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           VINLTNN+LTDYLSFDD+VA VL+++N+CKN ++KLVSSQQA+ L VTR    EC S+GS
Sbjct: 156 VINLTNNILTDYLSFDDVVATVLEEENRCKNKEDKLVSSQQAEVLTVTRVRPLECNSSGS 215

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +NQGRSKS+SKKNMKCYNCGKKGH+KK+CWNLNKKDSNP
Sbjct: 216 KNQGRSKSQSKKNMKCYNCGKKGHVKKNCWNLNKKDSNP 254

[Close]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL
Match: A0A5A7TUN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002510 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.3e-33
Identity = 73/99 (73.74%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           VINLTNN+LTDYLSFDD+ A VL+++N+CKN ++KLVSSQQA+AL VTR    EC S+GS
Sbjct: 156 VINLTNNILTDYLSFDDVAATVLEEENRCKNKEDKLVSSQQAEALTVTRVRPLECNSSGS 215

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +NQGRSKS+SKK MKCYNCGKKGH+KK+CW+LNKKD NP
Sbjct: 216 KNQGRSKSQSKKKMKCYNCGKKGHVKKNCWDLNKKDFNP 254

[Close]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL
Match: A0A6A6MLA0 (CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_027382 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.7e-24
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 19  VINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAKALMVTRSMSAECGSTGS 78
           +INLTNN+LTDYL F+D+ AAVL+++++ KN ++KL +SQQ +AL++ R  S E GS+GS
Sbjct: 214 IINLTNNILTDYLVFNDVAAAVLEEESRRKNKEDKLFTSQQTEALLMMRGRSMEHGSSGS 273

Query: 79  QNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNK 113
           QN  RSKSRSKKN KCY+CGK+GH+KKDCW+  K
Sbjct: 274 QNHSRSKSRSKKNFKCYHCGKRGHVKKDCWHYKK 307

[Close]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL
Match: A0A5D3DE66 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00280 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 15  LINFVINLTNNVLT------------DYLS--FDDIVAAVLKDKNQCKNNKEKLVSSQQA 74
           + N  + L +NVL+            D+L+  FDD+VAAVL+++N+ KN ++KLVSSQQA
Sbjct: 22  MANIHLALADNVLSSIKEKKTALEIWDHLTKLFDDVVAAVLEEENRHKNKEDKLVSSQQA 81

Query: 75  KALMVTRSMSAECGSTGSQNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           +AL+V +    +  S+GS+NQGRSKSRSKKNMKCYNCGKKGHLKK+CWNLNKK SNP
Sbjct: 82  EALIVKKGRPLKHNSSGSKNQGRSKSRSKKNMKCYNCGKKGHLKKNCWNLNKKYSNP 138

[Close]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL
Match: A0A6A3AUJ7 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110392pilonHSYRG00193 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 2   NMLNFYFKVFLTCLINFVINLTNNVLTDYLSFDDIVAAVLKDKNQCKNNKEKLVSSQQAK 61
           N+LNFYFKV+   +    INLTN+ +T  L FDD+ AAVL+++N+ KN +++ V+ QQA+
Sbjct: 263 NVLNFYFKVYRIRM----INLTNSNVTS-LVFDDVTAAVLQEENRRKNKEDRQVNLQQAE 322

Query: 62  ALMVTRSMSAECGSTGSQNQGRSKSRSKKNMKCYNCGKKGHLKKDCWNLNKKDSNP 118
           AL   R  S ECG + S   GRSKSRSK N+KCYNCG KGHLKKDCW+LN K+SNP
Sbjct: 323 ALTTMRGRSTECGQSSSHKHGRSKSRSKNNLKCYNCGTKGHLKKDCWSLN-KNSNP 372

The following BLAST results are available for this feature:

BLAST of ClCG11G008395 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16527.1	1.2e-34	76.77	hypothetical protein E5676_scaffold21G003420 [Cucumis melo var. makuwa]	[more]
KAA0044949.1	1.1e-32	73.74	hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa]	[more]
KAF2314531.1	1.6e-23	61.70	hypothetical protein GH714_027382 [Hevea brasiliensis]	[more]
TYK21892.1	2.1e-23	58.12	polyprotein [Cucumis melo var. makuwa]	[more]
KAE8706559.1	3.5e-23	57.76	hypothetical protein F3Y22_tig00110392pilonHSYRG00193 [Hibiscus syriacus]	[more]

BLAST of ClCG11G008395 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G008395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXA6	5.7e-35	76.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TUN0	5.3e-33	73.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6A6MLA0	7.7e-24	61.70	CCHC-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_02738...	[more]
A0A5D3DE66	1.0e-23	58.12	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00280 PE...	[more]
A0A6A3AUJ7	1.7e-23	57.76	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110392pilon...	[more]

BLAST of ClCG11G008395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 93..109 e-value: 7.8E-5 score: 32.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 93..107 e-value: 2.1E-6 score: 27.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 93..107 score: 10.987825
None	No IPR available	GENE3D	4.10.60.10		coord: 69..117 e-value: 1.7E-8 score: 36.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..85
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 75..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008395.1	ClCG11G008395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding