ClCG11G007200 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G007200
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description30S ribosomal protein S4, chloroplastic
LocationCG_Chr11: 7974533 .. 7974778 (+)
RNA-Seq ExpressionClCG11G007200
SyntenyClCG11G007200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATAGTGCTAATGCAGTCGGTCAGAGACAGCAGCGGATAAAAGAGCAGCTAGCCCCCTTGGTTGGTTGGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCGCTAACCAAAGGGCCGGAGTCATTCACACCAACTGA

mRNA sequence

ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATAGTGCTAATGCAGTCGGTCAGAGACAGCAGCGGATAAAAGAGCAGCTAGCCCCCTTGGTTGGTTGGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCGCTAACCAAAGGGCCGGAGTCATTCACACCAACTGA

Coding sequence (CDS)

ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATAGTGCTAATGCAGTCGGTCAGAGACAGCAGCGGATAAAAGAGCAGCTAGCCCCCTTGGTTGGTTGGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCGCTAACCAAAGGGCCGGAGTCATTCACACCAACTGA

Protein sequence

MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQLAPLVGWGRFFPSKRMEVGFANQRAGVIHTN
Homology
[Close]
BLAST of ClCG11G007200 vs. NCBI nr
Match: YP_009752752.1 (ribosomal protein S4 [Cyclantheropsis parviflora] >QIT05402.1 ribosomal protein S4 [Cyclantheropsis parviflora])

HSP 1 Score: 80.5 bits (197), Expect = 7.4e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A G+++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIVTAKGEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. NCBI nr
Match: YP_009430629.1 (ribosomal protein S4 [Gynostemma cardiospermum] >YP_009439806.1 ribosomal protein S4 [Gynostemma laxiflorum] >YP_010015141.1 ribosomal protein S4 [Gynostemma yixingense] >ART65088.1 ribosomal protein S4 [Gynostemma cardiospermum] >ATG86668.1 ribosomal protein S4 [Gynostemma laxiflorum] >QOI14266.1 ribosomal protein S4 [Gynostemma yixingense])

HSP 1 Score: 80.5 bits (197), Expect = 7.4e-12
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ 51
           MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Sbjct: 100 MASTIPQARQLVNHRHILVNGCILDIPSYRCKPRDIITAKGEKKSRVPIQ 149

[Close]
BLAST of ClCG11G007200 vs. NCBI nr
Match: YP_009752583.1 (ribosomal protein S4 [Trichosanthes homophylla] >QIT05064.1 ribosomal protein S4 [Trichosanthes kirilowii] >QJD26473.1 ribosomal protein S4 [Trichosanthes kirilowii var. japonica] >QIT04979.1 ribosomal protein S4 [Trichosanthes homophylla] >QJD26298.1 ribosomal protein S4 [Trichosanthes kirilowii] >QJD26385.1 ribosomal protein S4 [Trichosanthes kirilowii])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIVTAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. NCBI nr
Match: QJD26647.1 (ribosomal protein S4 [Trichosanthes rosthornii])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIVTAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. NCBI nr
Match: AHM88823.1 (ribosomal protein S4 [Lagenaria siceraria])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match: Q4VZH3 (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match: Q14FF5 (30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ 51
           MASTIP+ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R+  Q
Sbjct: 100 MASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRVMIQ 149

[Close]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match: A4GYR2 (30S ribosomal protein S4, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps4 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ 51
           MASTIP+ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R+  Q
Sbjct: 100 MASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRVMIQ 149

[Close]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match: Q8S8X2 (30S ribosomal protein S4, chloroplastic OS=Atropa belladonna OX=33113 GN=rps4 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQLA 53
           MASTIP ARQLVNHRHILVNG IVDIPSYRCKPRD   A  +++ R   Q++
Sbjct: 100 MASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQIS 151

[Close]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match: Q49KZ6 (30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps4 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A   ++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDDQKSR 145

[Close]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match: A0A6H0ESS9 (30S ribosomal protein S4, chloroplastic OS=Cyclantheropsis parviflora OX=387129 GN=rps4 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNG IVDIPSYRCKPRD   A G+++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIVTAKGEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match: A0A286KU05 (30S ribosomal protein S4, chloroplastic OS=Gynostemma cardiospermum OX=1739658 GN=rps4 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ 51
           MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Sbjct: 100 MASTIPQARQLVNHRHILVNGCILDIPSYRCKPRDIITAKGEKKSRVPIQ 149

[Close]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match: A0A291IAF5 (30S ribosomal protein S4, chloroplastic OS=Gynostemma laxiflorum OX=2041848 GN=rps4 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQRIKEQ 51
           MASTIPQARQLVNHRHILVNG I+DIPSYRCKPRD   A G+++ R+  Q
Sbjct: 100 MASTIPQARQLVNHRHILVNGCILDIPSYRCKPRDIITAKGEKKSRVPIQ 149

[Close]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match: A0A6H0ETP8 (30S ribosomal protein S4, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps4 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIVTAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match: A0A6M3RTQ8 (30S ribosomal protein S4, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rps4 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRD   A  +++ R
Sbjct: 100 MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIVTAKDEKKSR 145

[Close]
BLAST of ClCG11G007200 vs. TAIR 10
Match: ATCG00380.1 (chloroplast ribosomal protein S4 )

HSP 1 Score: 70.1 bits (170), Expect = 9.3e-13
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 1   MASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDSANAVGQRQQR 47
           MA TIPQARQLVNH HILVNG IVDIPSYRCKPRD      ++  R
Sbjct: 100 MALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSR 145

The following BLAST results are available for this feature:
BLAST of ClCG11G007200 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009752752.17.4e-1280.43ribosomal protein S4 [Cyclantheropsis parviflora] >QIT05402.1 ribosomal protein ... [more]
YP_009430629.17.4e-1274.00ribosomal protein S4 [Gynostemma cardiospermum] >YP_009439806.1 ribosomal protei... [more]
YP_009752583.11.3e-1180.43ribosomal protein S4 [Trichosanthes homophylla] >QIT05064.1 ribosomal protein S4... [more]
QJD26647.11.3e-1180.43ribosomal protein S4 [Trichosanthes rosthornii][more]
AHM88823.11.6e-1180.43ribosomal protein S4 [Lagenaria siceraria][more]
BLAST of ClCG11G007200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZH32.2e-1480.4330S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 ... [more]
Q14FF51.1e-1372.0030S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV... [more]
A4GYR21.1e-1372.0030S ribosomal protein S4, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps4 P... [more]
Q8S8X22.4e-1369.2330S ribosomal protein S4, chloroplastic OS=Atropa belladonna OX=33113 GN=rps4 PE... [more]
Q49KZ62.4e-1378.2630S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
BLAST of ClCG11G007200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ESS93.6e-1280.4330S ribosomal protein S4, chloroplastic OS=Cyclantheropsis parviflora OX=387129 ... [more]
A0A286KU053.6e-1274.0030S ribosomal protein S4, chloroplastic OS=Gynostemma cardiospermum OX=1739658 G... [more]
A0A291IAF53.6e-1274.0030S ribosomal protein S4, chloroplastic OS=Gynostemma laxiflorum OX=2041848 GN=r... [more]
A0A6H0ETP86.1e-1280.4330S ribosomal protein S4, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rp... [more]
A0A6M3RTQ86.1e-1280.4330S ribosomal protein S4, chloroplastic OS=Trichosanthes kirilowii var. japonica... [more]
BLAST of ClCG11G007200 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00380.19.3e-1371.74chloroplast ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 1..35
e-value: 1.3E-12
score: 47.2
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 1..35
e-value: 5.29902E-12
score: 53.4074
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 1..67
e-value: 7.1E-18
score: 66.8
NoneNo IPR availablePANTHERPTHR11831:SF3530S RIBOSOMAL PROTEIN S4, CHLOROPLASTICcoord: 1..46
NoneNo IPR availablePROSITEPS50889S4coord: 2..35
score: 9.940443
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 1..45
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G007200.1ClCG11G007200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding