ClCG11G004965 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G004965
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein of unknown function (DUF3317)
Location	CG_Chr11: 5300704 .. 5302345 (+)
RNA-Seq Expression	ClCG11G004965
Synteny	ClCG11G004965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAATACCGCAGACTAATTTTTAATTACTTTCCATTCTTCTCCTCGAAAGGGAGGAGCTTTTTGTATCTCTGAAGCTTCAAGGCAGGGCTCTCGAATCAAGCCTTCCTCAAATTTCATCTCTATCCGTTGCATGAAAGGTGAGACGAATTAGGTCACAGAGAGAGCTTCAATTTCATAATTTCTTGTTAAGCTTCATCTTTGGTCTTTCTAATCTCTCTGGAATTCATCATTTCCTGCTTCATTCCTCCTCCCTTTCAAGCAAAACCGAGTATTTCTCCTTTCTATAATGACTTCTGCAGCAAACGCTCATTTTTTCGATTCCTTTTCCTTCAATGGAAAATGGGTTTTGTCTTTTTCTTTTCGAACATTTATGGAACCGTTTCTGTTTGAGCAATTAGTTTTCGTGTTTATGGGTTTTTAGATCTGTGCTTCCTTTTAGAATTTGACTTTGAAGGAATCCGAAAATACTCCTCCCCCCCCCCCCCCCGGGGGGGGGAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCCCCCCCCCCCCCCCGGGGGGGTGAAAAATTGTGATAGAGAAGTTTGGCAGTGAAATATGGTATCCGAGTGATCTAGTACTTATGTTCAACGGCCAATTATACGGGCCTTCGTGATTAATAAACACATTACTTTTTGAAGTTTGAAGTTTGATTGTGCATTACGTTTTCGAAGTTTGATTGTGGAACTGCTATAACTTCTTGTTTTATCATCCATTGCCCCATACTTCCATGACCGGAAATTTTAGATTGATTTTGACTTGGGTGGTTGCTTCTTGCTTGTAGGTTTTCTATAGCCATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTAAGCTCTCTAACTTAAGGGATCTCTGATCTGTTTTATCATTTACAAGCATGCATCGTATCCATTTAGTTTTATGATTCGGATTGAAGTAATGCTACCAGTGTCATTGTCCAGGCAAATAATTTTTGATATTTACTGTTTTTTTTGGGGGGGTTAAGATTTGATATTGATTTTCCACTATTCGAAGTTATGTCCTGCCATGTGAATTTGGTTGTCAAGTGTTTATATGTTATCTAATTTTTAATCATGCTTGTTAGGTGTGCCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTCCAATCATTACTGTGAGATTGAATTTAGTTCGTGAAATTCTTACTTTTTGTTCTTACAATTGATCTCTTGAATTCTTCACATATTATTGTAGATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGGTTGGAAAACAAAATATTTATGA

mRNA sequence

GATAATACCGCAGACTAATTTTTAATTACTTTCCATTCTTCTCCTCGAAAGGGAGGAGCTTTTTGTATCTCTGAAGCTTCAAGGCAGGGCTCTCGAATCAAGCCTTCCTCAAATTTCATCTCTATCCGTTGCATGAAAGGTTTTCTATAGCCATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTGTGCCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTCCAATCATTACTATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGGTTGGAAAACAAAATATTTATGA

Coding sequence (CDS)

ATGAATTGGATTCAAAGGAAGATCTACCTTTACAATGTCACATTTGGGCTGTACATGTTGGATTGGTGGGAGCGGATCCTCTTCAGTGTGCCTGTGTCTTATGTTAACTGTATTAGGAAGTTGAATTTTCATTGGTCCAATCATTACTATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGATCACGATATGTAAATGATTTGTGCAAGAGGTATTGTGTTACCTTGACTCTACCATTTCCTTTTCAGGGTTGGAAAACAAAATATTTATGA

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFMFYNGSRYVNDLCKRYCVTLTLPFPFQGWKTKYL

Homology

[Close]

BLAST of ClCG11G004965 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 60

Query: 61 FYNGSRYVNDLCKRYCVTLTLPF 84
          FYNGSRYVNDL KRYCV L   F
Sbjct: 61 FYNGSRYVNDLYKRYCVYLCSTF 62

[Close]

BLAST of ClCG11G004965 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of ClCG11G004965 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of ClCG11G004965 vs. NCBI nr
Match: XP_038889912.1 (uncharacterized protein LOC120079682 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-19
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDLCKR+
Sbjct: 61 FYNGSRYVNDLCKRH 54

[Close]

BLAST of ClCG11G004965 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-18
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 53

Query: 61 FYNGSRYVNDLCKR 75
          FYNGS+YVNDLCKR
Sbjct: 61 FYNGSQYVNDLCKR 53

[Close]

BLAST of ClCG11G004965 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 52/75 (69.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     TMVVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TMVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVND+CKRY
Sbjct: 61 FYNGSRYVNDMCKRY 54

[Close]

BLAST of ClCG11G004965 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRKIYLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 53

Query: 61 FYNGSRYVNDLCKR 75
          FYNGS+YVNDLCKR
Sbjct: 61 FYNGSQYVNDLCKR 53

[Close]

BLAST of ClCG11G004965 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 49/75 (65.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDL KR+
Sbjct: 61 FYNGSRYVNDLYKRH 54

[Close]

BLAST of ClCG11G004965 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 49/75 (65.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNWIQRK+YLYNVTFGLYMLDWWERILF+                     T+VVVLMWFM
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFN---------------------TLVVVLMWFM 54

Query: 61 FYNGSRYVNDLCKRY 76
          FYNGSRYVNDL KR+
Sbjct: 61 FYNGSRYVNDLYKRH 54

[Close]

BLAST of ClCG11G004965 vs. ExPASy TrEMBL
Match: A0A2K2BQ13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGL+MLDWWER LF++                     +V+VLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLFMLDWWERCLFNI---------------------LVIVLMWFI 60

Query: 61 FYNGSRYVNDLCKRYCVTLTLP 83
          FYNGSRYV D CKRY  ++  P
Sbjct: 61 FYNGSRYVTDFCKRYVASILSP 61

[Close]

BLAST of ClCG11G004965 vs. TAIR 10
Match: AT2G30942.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++V++LMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVLILMWFI 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNGSRY ++LCKR+
Sbjct: 61 LYNGSRYFSELCKRH 54

[Close]

BLAST of ClCG11G004965 vs. TAIR 10
Match: AT1G06515.1 (Protein of unknown function (DUF3317) )

HSP 1 Score: 83.6 bits (205), Expect = 9.4e-17
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++VVVLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVVVLMWFV 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNG+RY ++L +R+
Sbjct: 61 LYNGTRYFSELFQRH 54

[Close]

BLAST of ClCG11G004965 vs. TAIR 10
Match: AT1G06515.2 (Protein of unknown function (DUF3317) )

HSP 1 Score: 83.6 bits (205), Expect = 9.4e-17
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFSVPVSYVNCIRKLNFHWSNHYYTMVVVLMWFM 60
          MNW+QRKIYLYNVTFGLYMLDWWER LF+                     ++VVVLMWF+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFN---------------------SLVVVLMWFV 54

Query: 61 FYNGSRYVNDLCKRY 76
           YNG+RY ++L +R+
Sbjct: 61 LYNGTRYFSELFQRH 54

The following BLAST results are available for this feature:

BLAST of ClCG11G004965 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016096.1	5.0e-20	65.06	hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004141475.1	1.9e-19	69.33	uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica...	[more]
XP_008459402.1	1.9e-19	69.33	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_038889912.1	9.4e-19	68.00	uncharacterized protein LOC120079682 [Benincasa hispida]	[more]
XP_022134536.1	3.6e-18	67.57	uncharacterized protein LOC111006754 [Momordica charantia]	[more]

BLAST of ClCG11G004965 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G004965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L1	9.1e-20	69.33	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
A0A6J1BY20	1.7e-18	67.57	uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JYU1	1.1e-17	65.33	uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112...	[more]
A0A6J1FLX2	1.1e-17	65.33	uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454...	[more]
A0A2K2BQ13	3.3e-17	54.88	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G263300 PE=4 ...	[more]

BLAST of ClCG11G004965 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30942.1	2.2e-18	54.67	Protein of unknown function (DUF3317)	[more]
AT1G06515.1	9.4e-17	53.33	Protein of unknown function (DUF3317)	[more]
AT1G06515.2	9.4e-17	53.33	Protein of unknown function (DUF3317)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..73 e-value: 4.2E-21 score: 74.3
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR33727:SF5	OS07G0446900 PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G004965.1	ClCG11G004965.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane