ClCG11G004520 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG11G004520
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMediator of RNA polymerase II transcription subunit 32
LocationCG_Chr11: 4846436 .. 4852327 (+)
RNA-Seq ExpressionClCG11G004520
SyntenyClCG11G004520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTGTACTACTCTTACATATTTGCCCAAGGCCCAACTGGCCGGCCCATGTTTCAAATATTTGTTTCTGTTTTTTTGAGGGTTTCCGACCTAATAGTATTTAAAATAAGGGTTATATTAAGTTACAACGGTCTATTTCGCTTTGTTTCTCTCTCATCCACGCATGGGCTTAGGGCGTCATGGCCATTGATATATCTTTTTAAAAAATTAAGAAAATATTGGAATTCTTCCACTTCCTCTTTCTTTTTCTTCTATTTTCTTATTCCTCATCCCTTTCTTTTCTCCTTCTCGTTGGTGTGAGTTGCAGGCGGGTGATGGACGCACGTGGCAAGCATCTTCCGACGCGGGGTGATCAGATCTTGTGCATCTTCCAGCACGAGGCAAGCAGATTCAACACATCTCTAGCGCAAGGAGAGCAGATTCGGCGCGAGACGAATCAACGATGTGGGGTTCTGGATGTTAACGATCAACGACGCTGGGTGGTTTATATTATACATGGACACAGTTATATTGAAACTACTTTATTTTTTTTTCATATATATATCTATTCATTTTCGATATATTGGGTAATTTTTTGATATAAATATATATCTTCAATTTTTATTGAGGCTTTTTGTTTTATGATCTATATATATTGAACATTAAATTCATAATTTACGATTTATATACGATGGTAGATAACTTTGTTGATTTCAAAATCATGAGGTTTAAATTGAATTTGAAACAATCACATTAATTGAGAATTACATATTTATGTTAAGAAGCTTCTGTAAAATTTACTTCAATGTAATTTAGTCAATCTTACTAGTATATTTCATATATTGATTAGAATACTTGCAAACATTTGAGACAAATGTTCTAATGTATATTTAAAAATAACCACAATCTAAACTATGGTATATATAAGATAATAACGCAAAATATAAACAAACTCAAAATAAACAACAAACTATAATAGACAAACTCAAATAAGTTAGATCATCATATAAACAATAAGTCCATACATATCATAATACCTCAAACCTATGTCAAATAAACAGTGAAATATATTATATTAGAACAAATATTACTCAAACAAACAATGTAATATAAATGCATTTATGGGAAAAAAATATACTATATGAGAACAAATACGTTAGAACATTTATTTTATCTCCCCATAATAAATGTGTTTTCTCTTTTCATAAGCCTGGTAAATAGAGGAATATATATCTAAATCGGACAAAAAATAATAAAAAAGGGGCAAATTAAATGCATTTTCTATCTCCGTAATAAATTAATTTTCTCTTCCTATTATTAAGAGAGCTTCGTAAATAAGAAAATATATATAAAAATAGGACAAGAAAGTAATAAAAATGACAAATTTGTCAAAAAAAAAAAAAAATAATACCAAAAGCCTTTATTGAAAAAATTCAAAATTAAAGACATTTTTAAAAATATATGGCCAAATATAGTTTTTTTTAATGTAAAAATCTCTTTTTTTAATGTTTATCTGTGTGCTAGTCGTCCATAGATTATATTTTATAGATTAGAAATAGTCTATCATACATATATATATATATATAAATTATCTCTAATTAACATAAAAATAATTTATTAGGAAAATAAATCTATCAAGTCTACCTATCACCTATAGACATATAAATGGAGATAAAATCATATAAATTTTCTATTAGTGGTATACATCTTATAATTTGGATTGATTTAAGAAATAAATGTTTTTTAAAAATTGATTTTCATTTTAACACTTTTGATAAGAACAATTTATAATAAATACACTATGACTTTTAAAGTTAATTTTGAGTGGTTGCCAAAATATTCTATTTATTTTAAAATGACTTATTTTTTAAATTAAATATTTGAAAAGATATTCCAAACATATCAATAAATTAGACCCTCCAAAAGAATAAAAAGTTGTCATATTTGCAAATTATTTATTTATGTGACATGACCATAAATTTTGGCATTTAATAAAAGTGTCCCATATTTAATTTTGAAATTTTAATTTGGGGAGAAATGTCTTGTTTTAGCTCACACTTGTCAAGGGTATCCAATTTTACTCTAAATTTTTAATTTCAATGAAATATGAGATGTGAATATATTTTTAAATTTTATAACAAAAATAGTAATAAATAACAAAAGAAATTTTTTTTTGAAAAACCAACAATAAACTAATATTAGGAACTAAGTTTAAGATTATTTAAAATACAAGACTAAAATTTATTAACTAAAAAAATTAAAATATAAAAGAGATAAAACCAAATAAATTATATATCTATCCTCCGTTTGAATAATAATAAAAAAAAAGTTTAAAAAATGATTTTAAAGTGTGTGATTTGAAATCTGAAAAAATAATTTTAAATTAATTATTTCATTTGTAAGAAGAAAAATTTTAAATGAAGATATTTAAAATTTTGTGTTTGGCTGATAGACTACAAAAAAATAAAATTAGGATTTTGTTGAAAGATAATTGATTAAAAGACCAATCTTTCAAGTCCATTATGAGTTTTGCCCCGTAAACTTAATGACCGACTCCTTAAATCATTTTCAACCAATTTTACAAAATCACCTTACTTCTTTTTATATTCTGCATCTTCTACGTTTTCCTTTCCTTTTTTATTTTCTTCTTCTTCTTCGACTAGATTCCACGAGGTTCTCTTCTTCTTCTTTTTTTTTTATTTTTTTTATTTTTTTATTTTTTTTTCTTTCCTTTCTCACTCTTCTTCTTCTCTGACTAGTTCCGACGAGTCGAAACAATCAACTTCTTGTTCTTTCCCGCGTTTCAGTTTGTGATGAATGAGACCGATCATCGGAGAGTAAGAGAGTGAGAATGTGGGAGTGCAAGAAAGTGAGAAAGAGAAGGAAAATCAACAGGACAAGGAAGTTGAAAGCGAAGAGTAAAGAGTCAAGTCTAATGCACGTGTTTTCATTTTAGTAATTTTACCTAAATAGGACGTGAGCCAAATTATTATTTAAAAAAATAAATAAATAAACTTAAATTCAAAGGGTACTTCAATTTTCATTTATTTAAATTAGATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGGTGAGTCCTCTTCCATCTCTATCTTTCTTTCTTTCTCTCTCTAAGATCTGTTTTCTGCATAGTGTTTCCGCCGCGCTGGTCATGAATTTTGGAAAAAAGAAAAAAAAAATTAAAGAGGAGCAAGAATGTTAACTTAGGAGGTATAAAGTTTAAGGTTGAATGCGATGGAAATTGAAATCGAGAGAATTTGGAGCTATAAATTTGATTTTTCACCTTACTTTAAAAATTAAATTTGGTTCCAACTTTCTCCCAAAAGAGTAAACTGCTGACGCTATTGATCTCTCCCAATTCTCCTCCTCGCTTGATAACCTCTCTTTCAGTTTTCACGCTTGCCTTAGCTTCGAGCAAGTGACAAGTAGATCGATTGCAGATTTGCAGTTTCTCTGAGCCCTTTACTCTCCATTGCGGTCTGCTACTTGTCCCACTTTCTGTTTCGGTATTGTAATCGTTTCTTTTAAAGATTGAACCGTACCACAAGGAAGGAAACTGATACGCTTTTCAAATTTGTTTTTCTCAACTTTGGTGGGTTGAATTCAGAGGATTCGATGGGTTTCCCTGCCAATCTTCTTCCTCCTCCGCTGGGATCTTTTCAATTTCCCCCTCTCTTTTCCATTTTCGTAGATTATTGTCTTCTTTGTTGATTCTGGTTTTGTTCCTCTTTTTCTGGCTCAGTTTTATCCTCTTCCTCTGCCCCGGCAGTATGAGATTCTCTTTTCCCCCAATTTGCTACTTCCCCATTCTCTAAAAGAGAGAGACAGATGGCTTGAATAACCCTCTGTGTACAGTACCTTTTTGGAGGCCGAACTTTGAACAGGTTTCTCCCCTCATTAACAGAAGACTTTCATCTTTCAGAGTGCCATCGCTGTTGCAATCTTTCACTTTTTGGGTTCAAAGCTTTTAACTCATGAACAAATTATTGATGGTCTGCATTTCTTAATTTGTTTTCCATTTTTATTTCCTTGAATCTTTGCATATTTTGCTGCTAAATCATCTTGAAAAGCATTAGTCCTGTGAGTTTTCCCCCCGTAGCTGTTTGGTATCCCGATGTATATATGTATGTATATCTATGTATCTATGTATCTATCTATATATATATATATCCTTTTTCTTTTTTTTTTTTTTGAGAAGAGAAACGATTTCGTTTCATTGACAGGAAGGGAGAGAACCCTAACACATCTGTAGGTGAATTACATGACGTTCTCCAATGAGAAATTAACAAAGATAGGCTATATGTATTTAAAGGGTGTTCACATTTACACCGATGCATAACATGAAAAAGAATTAAATTCATAAAGTTATTAAAGGAAGAGAAAAGATCCCTGAAAATTCTATCAAGAGCCAACTATAAAGTCTTCTTTGCCCCATGGAAAGGGTGACCCGTCAAAATTGAAGTGAGGAAATCAAAGATGGTGTTAGGCTAAGGTATGGACCAATCGAAAGTAGCAAGAATAATGTCCCAGTATCTAGAAGCAAAAGGACAGTGAGCAAATAGGTGATTAGGAATTTCTGAAGCTATACAACACATAACACACCAAGATGGAGAAAGGTGTTTATGTGTAGGAGTAGTATGGTATTAGTAAGGGCATTGGGGTAATTAGTTAGGGAGTTGGTTAGGGTATTTGGTTATTAAATAGAGGGAGGGGGGTTGAGGAAAGGAAGCAATTGTTGAGTGATTTAGAGCTTGGGTTAGCATACTCAAGAGGAGAGGTTCTAAGTGCCTAATACTTGGTTTATCTTGTTTTTCTTGATCATTTATATTTCAATATATTTCAGTTCTTGATTCCTGGTAGGTGGTACTGTAACAAAAGGTTGATAAATGGCATTCTCCTTTGTAGTCAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTAGGCTAAAGTGGAATATGAAAGTTTAGGAACCAAAGTGCAATCGATATGAAAGTTCAAGATCTTGATTGTTTTCTCATGCATTTTAGCATTTCACAAGAGACTAGACTCTAGGTACTTACTTTCTTGGTTGTCATATATTTAGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

mRNA sequence

ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

Coding sequence (CDS)

ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG

Protein sequence

MDDVRLCEETEKLRDAVKAEATTILSEACENGAVLSSFTVKPKETNGNYNNIDEAPKFTKLAPHLSQSSSSISLTLSPRQATAPPPSDLRRSAAAPPSDVRPAAEVSRRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
Homology
[Close]
BLAST of ClCG11G004520 vs. NCBI nr
Match: XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 5.0e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of ClCG11G004520 vs. NCBI nr
Match: KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-66
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of ClCG11G004520 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of ClCG11G004520 vs. NCBI nr
Match: XP_004148855.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031736355.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_006151 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of ClCG11G004520 vs. NCBI nr
Match: TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of ClCG11G004520 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-43
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4   IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
           SVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64  SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123

Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
           Q GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match: A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match: A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
           SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123

Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
           ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match: A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4   LVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVRLEQMSKAVRWLVIELQHGSG 229
           SVKQRIGSECLVDEATGSLAGKSGQ  ATTTGLPPISA+RLEQMSKAVRWLVIELQHGSG
Sbjct: 64  SVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQHGSG 123

Query: 230 -AAASASAHSHPSAPFDARFTEDATQ 253
            AAASASAHSHPSAPFDARFTEDATQ
Sbjct: 124 AAAASASAHSHPSAPFDARFTEDATQ 149

[Close]
BLAST of ClCG11G004520 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0 

Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
           +VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4   IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63

Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
           SVKQRIGSECLVDEATG   + AG    A  TG    LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64  SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123

Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
           Q GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:
BLAST of ClCG11G004520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902813.15.0e-6797.20mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0... [more]
KAA0045925.11.1e-6697.20mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
XP_008457936.13.3e-6696.50PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo][more]
XP_004148855.13.3e-6696.50mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031... [more]
TYK13665.13.3e-6696.50mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
BLAST of ClCG11G004520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84VW51.8e-4367.33Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O... [more]
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TWZ75.4e-6797.20Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A5D3CQ461.6e-6696.50Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A0A0LIN71.6e-6696.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1[more]
A0A1S3C6T61.6e-6696.50mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G... [more]
A0A6J1JH281.0e-6595.89mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb... [more]
BLAST of ClCG11G004520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11760.11.3e-4467.33MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..252
NoneNo IPR availablePANTHERPTHR35989:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 110..252
IPR033244Mediator of RNA polymerase II transcription subunit 32PANTHERPTHR35989MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 110..252

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G004520.2ClCG11G004520.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009631 cold acclimation
biological_process GO:0010150 leaf senescence
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048364 root development
cellular_component GO:0016592 mediator complex