ClCG11G001470 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G001470
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Mediator of RNA polymerase II transcription subunit 20
Location	CG_Chr11: 1702038 .. 1704363 (+)
RNA-Seq Expression	ClCG11G001470
Synteny	ClCG11G001470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATCAAAAGAATTGTATGGATCCCCAAAGGCCATGGCAAGAAGTACTCAAGTTTGGGCTGGCAGTGGTCTTTATACTTTCCATTGGGCTTTCCGCAAAACTTGCAAATTGTTCCTAACCTGCTCCGGATCCGACTAATCTCCGCCGTCTCGCTGCAGCTTTAGTCCGGCCGGAAGTATGCCGCTAAAATGGTAAAACCCCACAAACCCCGATCGAAAAACTTCTCATCCCTTTTCTCTTGGTTTTGACTCTTGATCTACCTTCATCGTTTTCCTTTGCTTAGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCACAATGTGTTGAGAGTATCCATGGCGTTAAAGGAGGAAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGGTAATCGCCCTGTTTTTCTTCAGACGTTTTTCGGAATTTGATTACCGAAATGAATCTTAAATCTGTCAACAGACCAAAACCTACCGGCGGCCGAGTTCCCGCGGGATTTTCTCGGAATTTCGCTGCCCGAGCAACCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATTGTCTTGGAAGCTGATTTCACGATTCAGGCCATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTCAATTTCGAGGTTGACCACTCAACTTCTCTAGTTCTGATGTACTCTGCATCTATACCATGTCCTGAGATTCGAATTTGAAGTTGATTCTTGTGGCTTTCTAGTCTCTGCTCTTTTGCCCTTTTTGTTGATAAATCGTTGATTACAGGCAGTTCACATTATTGGTTTCTCAGGGGTTCCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGGTAGGGCTCATTTCATCATTTCATGTCAACTCTGTTTTTGTGTTATTGCATGCTCTTCTGGTTGTTTGTTTTGTTGTTTTTTCATGTATTTTTCCTTATCTGAGCGAGCAGTTTCTTTTCCCTTGGGCTGTTTCAACACAATGTTTCGCCTCTGTCTTCTCATCTTCAAAACAATGTAAATTTTAACACAATCTATAAGTTTAAGCTTTTGGGTTCAAAGTAGAATGTCATTTCCTCCTTCAATTAAAATAGATTTTCACTTGTTGGGACTTGTATAACTTTTCAACCCTACTAGTGAAGAGGATGGTTGAAGTGTTGATAAGTTGCTTGGTTCATTAGTGATTTAAAACAATAGAGTAGAAGAAAAAAGAAATCATTCATCATAATTCTCTGAAAAACTTATCAGTAAGCTTTGGAGTCAGGGATCTTCTGTCAAGAAGTAGTGAGATCTGATTAGGATATCTTTGCAAAAGCCTGTGTAGGATAAGTTATTGAAGTCGTTAATGTGATCTTCACATTTTTTTTTATATTTTATACTCATTGTTGCACACGAATCAAAGTGTTTTGAGTAAATTCCTCCGAAGGAGTTATTTAGTTTGGAAAATGTCTTCCAGTTCACTTGAATGCTTGATGAGAACGTGAATGTGTCTGTCTTTGCTTAATCCTGAAACAGGTAAAGTAAAGAAAGATGCCGATTTCAAATGTCTGTCCTTCATTATCATTTTTTCTTGAAAAAACGCATTATACCATGTTCTCTATTGTATTGTCAAGTCCAAGTAGTAAATTCAATCGCAATTGCTTGCACTTCTCTACCAAATCTTGATTCAGTTTTGTAGTTTGTTTTTAATTAGTACGATGAACATCATATTGGAAGTACGGTTAAATCAAGTGGGATTTAATTAGAAGCTAGAATCTCTCTGTCAAATGTGGCCATGTTCTATTTTTTGGGTGTATATATGAAAATTGCTCTTTGTTGCTGTTCCAATGAAATATTTTGGACACTTGATAGAGATTCAATAGTGTATTAAAAAACCTGCATATGGCAGATTGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGGTAATGGAGGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAACCAAACTTTGCAGAATATGGACTGTCGGATTACTACACTTCTCAACACACAGCAGTTCAGTATGCCAACGTGATGGCTCAACTTATCGCTACTGTGCAAGCAGTTCAAGCAAGAAATTAGCATCAAAATTGCTTTTATTTATCAGGTTGAGATCTGTACTGATGACCCATTCTCAACTCCCTAATGACTTGAATTAAAAAACAAATGAAATATTTCATATTCTGC

mRNA sequence

CAAAAAATCAAAAGAATTGTATGGATCCCCAAAGGCCATGGCAAGAAGTACTCAAGTTTGGGCTGGCAGTGGTCTTTATACTTTCCATTGGGCTTTCCGCAAAACTTGCAAATTGTTCCTAACCTGCTCCGGATCCGACTAATCTCCGCCGTCTCGCTGCAGCTTTAGTCCGGCCGGAAGTATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCACAATGTGTTGAGAGTATCCATGGCGTTAAAGGAGGAAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGACCAAAACCTACCGGCGGCCGAGTTCCCGCGGGATTTTCTCGGAATTTCGCTGCCCGAGCAACCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATTGTCTTGGAAGCTGATTTCACGATTCAGGCCATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTCAATTTCGAGGTTGACCACTCAACTTCTCTAGTTCTGATGCAGTTCACATTATTGGTTTCTCAGGGGTTCCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATTGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGGTAATGGAGGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAACCAAACTTTGCAGAATATGGACTGTCGGATTACTACACTTCTCAACACACAGCAGTTCAGTATGCCAACGTGATGGCTCAACTTATCGCTACTGTGCAAGCAGTTCAAGCAAGAAATTAGCATCAAAATTGCTTTTATTTATCAGGTTGAGATCTGTACTGATGACCCATTCTCAACTCCCTAATGACTTGAATTAAAAAACAAATGAAATATTTCATATTCTGC

Coding sequence (CDS)

ATGCCGCTAAAATGGGTTTTGCATTGGCAACCCAATGCCGGCAGCACTGTTAACAGTCAGATACTCAACGAGGTTTCACAATGTGTTGAGAGTATCCATGGCGTTAAAGGAGGAAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGACCAAAACCTACCGGCGGCCGAGTTCCCGCGGGATTTTCTCGGAATTTCGCTGCCCGAGCAACCAAACAAGTATTACCTTATAATTCGTGGCCAACGGATTGTCTTGGAAGCTGATTTCACGATTCAGGCCATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTCAATTTCGAGGTTGACCACTCAACTTCTCTAGTTCTGATGCAGTTCACATTATTGGTTTCTCAGGGGTTCCAGTATCAGTTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACAATTCCGAGAATTTGAGAGGAATAGTTATGGAGATTGAGTATCTCCCAATTTCTTCAATGGAGAAATCAAGACAGGTAATGGAGGAGTTCTTCGATGTATGGCAAGAAGCCATGTCAAAAAGTTCATTACCAGGTCGTTTCATGCACATAGAACCAAACTTTGCAGAATATGGACTGTCGGATTACTACACTTCTCAACACACAGCAGTTCAGTATGCCAACGTGATGGCTCAACTTATCGCTACTGTGCAAGCAGTTCAAGCAAGAAATTAG

Protein sequence

MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSLVLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQARN

Homology

[Close]

BLAST of ClCG11G001470 vs. NCBI nr
Match: XP_038889134.1 (mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 429.9 bits (1104), Expect = 1.5e-116
Identity = 220/241 (91.29%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSR+VMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRKVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           F+VWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ AR
Sbjct: 181 FEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. NCBI nr
Match: XP_004141069.1 (mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus] >KGN60509.1 hypothetical protein Csa_019466 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 2.1e-115
Identity = 219/241 (90.87%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           FDVWQEAMSKSSLPGRFMHIE NFAEYGLSDYYTSQHTAVQY NVMAQLIATVQAVQ AR
Sbjct: 181 FDVWQEAMSKSSLPGRFMHIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. NCBI nr
Match: XP_038889135.1 (mediator of RNA polymerase II transcription subunit 20a-like isoform X2 [Benincasa hispida])

HSP 1 Score: 422.2 bits (1084), Expect = 3.1e-114
Identity = 217/241 (90.04%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                         YQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSR+VMEEF
Sbjct: 121 --------------YQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRKVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           F+VWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ AR
Sbjct: 181 FEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSAR 220

[Close]

BLAST of ClCG11G001470 vs. NCBI nr
Match: XP_022946745.1 (mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita moschata] >XP_022999230.1 mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita maxima] >XP_023546929.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546930.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6599532.1 Mediator of RNA polymerase II transcription subunit 20a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.4 bits (1082), Expect = 5.2e-114
Identity = 215/241 (89.21%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A E
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDTNIAAGE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISVPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSKQVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           F+VWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ AR
Sbjct: 181 FEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. NCBI nr
Match: XP_008459711.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo])

HSP 1 Score: 421.0 bits (1081), Expect = 6.8e-114
Identity = 215/241 (89.21%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           FDVWQEAMSKSSLPGRFMHIE NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ AR
Sbjct: 181 FDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. ExPASy Swiss-Prot
Match: Q6NPF4 (Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana OX=3702 GN=MED20A PE=1 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.7e-87
Identity = 161/237 (67.93%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ     E
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQ-ANQLE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEKLQSYK +VAL F+       
Sbjct: 61  FPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFD------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK+++VMEEF
Sbjct: 121 -----------GFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ 238
            ++W EA++K SLPG+F++I+ NF E+GL D YT QHTAV+YA VMA +IATVQAV+
Sbjct: 181 LEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVR 218

[Close]

BLAST of ClCG11G001470 vs. ExPASy Swiss-Prot
Match: Q9M0S0 (Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana OX=3702 GN=MED20B PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.3e-77
Identity = 141/235 (60.00%), Postives = 181/235 (77.02%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ    AE
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQ-ANQAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME LQSYK +++  FE       
Sbjct: 61  FPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      G +YQLGDF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++MEEF
Sbjct: 121 -----------GLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA 236
            ++WQEAMSK SLPG+F++ E NF ++GL D YT QHTAV YA  MA L+A +QA
Sbjct: 181 LEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

[Close]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL
Match: A0A0A0LHQ1 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis sativus OX=3659 GN=MED20 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.0e-115
Identity = 219/241 (90.87%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           FDVWQEAMSKSSLPGRFMHIE NFAEYGLSDYYTSQHTAVQY NVMAQLIATVQAVQ AR
Sbjct: 181 FDVWQEAMSKSSLPGRFMHIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL
Match: A0A6J1KEU1 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita maxima OX=3661 GN=LOC111493666 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.5e-114
Identity = 215/241 (89.21%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A E
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDTNIAAGE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISVPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSKQVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           F+VWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ AR
Sbjct: 181 FEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL
Match: A0A6J1G4U3 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita moschata OX=3662 GN=LOC111450720 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.5e-114
Identity = 215/241 (89.21%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD N+ A E
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDTNIAAGE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISVPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKS+QVMEEF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSKQVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           F+VWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ AR
Sbjct: 181 FEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL
Match: A0A5D3CH02 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo var. makuwa OX=1194695 GN=MED20 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 215/241 (89.21%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 49  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 108

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 109 FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 168

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EF
Sbjct: 169 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEF 228

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           FDVWQEAMSKSSLPGRFMHIE NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ AR
Sbjct: 229 FDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSAR 271

[Close]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL
Match: A0A1S3CAW6 (Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 GN=LOC103498750 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 215/241 (89.21%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQN PAAE
Sbjct: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE       
Sbjct: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQ+M+EF
Sbjct: 121 -----------GFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQIMDEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ-AR 240
           FDVWQEAMSKSSLPGRFMHIE NFAEYGLSD+YT QHTAVQY NVMAQLIATVQAVQ AR
Sbjct: 181 FDVWQEAMSKSSLPGRFMHIESNFAEYGLSDFYTPQHTAVQYGNVMAQLIATVQAVQSAR 223

[Close]

BLAST of ClCG11G001470 vs. TAIR 10
Match: AT2G28230.1 (TATA-binding related factor (TRF) of subunit 20 of Mediator complex )

HSP 1 Score: 321.2 bits (822), Expect = 6.9e-88
Identity = 161/237 (67.93%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ     E
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQ-ANQLE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEKLQSYK +VAL F+       
Sbjct: 61  FPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFD------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLPISSMEK+++VMEEF
Sbjct: 121 -----------GFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQAVQ 238
            ++W EA++K SLPG+F++I+ NF E+GL D YT QHTAV+YA VMA +IATVQAV+
Sbjct: 181 LEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVR 218

[Close]

BLAST of ClCG11G001470 vs. TAIR 10
Match: AT4G09070.1 (TATA-binding related factor (TRF) of subunit 20 of Mediator complex )

HSP 1 Score: 288.9 bits (738), Expect = 3.8e-78
Identity = 141/235 (60.00%), Postives = 181/235 (77.02%), Query Frame = 0


Query: 1   MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNLPAAE 60
           MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ    AE
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQ-ANQAE 60

Query: 61  FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEVDHSTSL 120
           FPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME LQSYK +++  FE       
Sbjct: 61  FPREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFE------- 120

Query: 121 VLMQFTLLVSQGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEF 180
                      G +YQLGDF+LRVGKVVP ++E +RG+VME+EYLPISSM  ++++MEEF
Sbjct: 121 -----------GLEYQLGDFRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEF 180

Query: 181 FDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQYANVMAQLIATVQA 236
            ++WQEAMSK SLPG+F++ E NF ++GL D YT QHTAV YA  MA L+A +QA
Sbjct: 181 LEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216

[Close]

BLAST of ClCG11G001470 vs. TAIR 10
Match: AT2G28020.1 (BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-16
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 170 MEKSRQVMEEFFDVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTSQHTAVQ-YANVMAQ 229
           ME +R+VMEEF ++W EA++K SLPG+F++ + NF E+GL D YT QHTAV+ YA VMA 
Sbjct: 1   MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60

Query: 230 LIATVQAV 237
           +IATVQAV
Sbjct: 61  MIATVQAV 68

The following BLAST results are available for this feature:

BLAST of ClCG11G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889134.1	1.5e-116	91.29	mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Beninca...	[more]
XP_004141069.1	2.1e-115	90.87	mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus] >KGN60...	[more]
XP_038889135.1	3.1e-114	90.04	mediator of RNA polymerase II transcription subunit 20a-like isoform X2 [Beninca...	[more]
XP_022946745.1	5.2e-114	89.21	mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita moschata...	[more]
XP_008459711.1	6.8e-114	89.21	PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform ...	[more]

BLAST of ClCG11G001470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPF4	9.7e-87	67.93	Mediator of RNA polymerase II transcription subunit 20a OS=Arabidopsis thaliana ...	[more]
Q9M0S0	5.3e-77	60.00	Mediator of RNA polymerase II transcription subunit 20b OS=Arabidopsis thaliana ...	[more]

BLAST of ClCG11G001470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHQ1	1.0e-115	90.87	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis sativus OX=365...	[more]
A0A6J1KEU1	2.5e-114	89.21	Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita maxima OX=36...	[more]
A0A6J1G4U3	2.5e-114	89.21	Mediator of RNA polymerase II transcription subunit 20 OS=Cucurbita moschata OX=...	[more]
A0A5D3CH02	3.3e-114	89.21	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo var. maku...	[more]
A0A1S3CAW6	3.3e-114	89.21	Mediator of RNA polymerase II transcription subunit 20 OS=Cucumis melo OX=3656 G...	[more]

BLAST of ClCG11G001470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28230.1	6.9e-88	67.93	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	[more]
AT4G09070.1	3.8e-78	60.00	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	[more]
AT2G28020.1	3.2e-16	61.76	BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013921	Mediator complex, subunit Med20	PFAM	PF08612	Med20	coord: 1..226 e-value: 1.9E-37 score: 128.8
IPR013921	Mediator complex, subunit Med20	PANTHER	PTHR12465	UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49	coord: 6..235
None	No IPR available	PANTHER	PTHR12465:SF0	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20	coord: 6..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G001470.1	ClCG11G001470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity