ClCG11G001410 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G001410
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-box protein
Location	CG_Chr11: 1661991 .. 1667281 (-)
RNA-Seq Expression	ClCG11G001410
Synteny	ClCG11G001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTGGACTCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTGCGATTACTGCTCTCACCGTCTTGTTAACCTTCGTTCATCGAAACGCTCGTCTCTAATTCGCATGTTATTCTTTCTTACTGCAGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTAAGTTTATCATTATTTAGACCTAAGTTTTAAGATATCTGCAGTGAAAATTTTATCTATATTTATTTTAACCATCTACCATTGTTTGTTATCTAGGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGTGCTATTATTTTCAATGCCTTTGTTTGCATCTTATTTACGGAGGCGGATGATCGATTGAGCCTCTCTGCTGAATATTTAGAGCAATAATATTTCTAATTAGGAGGATACCAAAGTGTGGTCTATCCATATTAGTGATTTAATTACTTCAGCCACTCGACCTTTTTGTAACTATGAAGTATGAACTAGCTTTTATTCAGTTGGATTGGAGTCTTTTTATGTAGTTGTTTTCTTTTTGGTCAATCGCTCTACCCTTAAAATTTTTTCCTACCTTAGCCAGATTGAGCCTATCTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGTGAGTGAGTTCTTGGACTTACTTATCAGAACAAGGATTTTGAGAAATAAGGATCGGATAAGGTCTATGATTTGGCCAAAGCTTTAATGTTCTTTTTGTTTGCCCTCTCTAGTTTGGCTGCATTTTTTCTTTTTCTTTTTACTGGTAAGAACTGAGGAAAATATATCAGACAGAAAAGGGGAAATAAACAGCATAGGAATCGGTAAGAGAAAACCCTTTTTAGTAAAAAACATTCATGAGAAAATTGTCCGGACGAAAAGATGGAAAACCTGTTTGGTCTAAGAAAGAAAAAAAGGCAACAGTTTTGAACTCTTGGAAGAAGTAACTCCCAAAAAGCTGCGGTGTAACCGCAAGAACACAACCTAGACCACTCAATACATATAAAATCAACAATTCAAAATGACTTATTCAACCTTGAAAGGAGAAATCGTCTTCATGTTTAAAACTTCCGAAGAACTTCAATAAGAAACCTGAAGGAAGCAATACTTCAATAAGAAAGGCCCATTAAAGGACCTTTAGGAAGAGAAACAACGCCAACAACTAAACTACCTACCTTTCTAAGTGCTCAGGATCTTGGTGGTCTTTTAAATGTCTCTTTAAAGAGGCTGGAGGTTAATCATCAACCTTTCTAAGACCACAATAACAGATATTGGTGTAGAGGATGCGAACAACTAGGCTAAAACCCTACTTGCCAAATTTTTTCCTATAGGTTCTGTTTCCCTGATCTCCCTGTTGGAGGAGGTAACCACAATTCAGCATCTTTTGGTAGCTAGACGATCAGAATGGAAGATATTCCAATGTTGAAACGTTGAATTGACTTGTCCAATCAGGCATCTTAAATCTTCCAGACCATTTATTTTTTCTAATTGGAGTGCCTTCCAAAGTTTTTTTTGGGTAGTTACATCAAGTAGTTGCAAATCTTGCAGTGGACTGGAGTGAATGTTCTGTTTCAGTTTGAGAAATTAAAAGGGACGAAATTGTTCATGGGGATGTTGATATTAATAGTTCAAATTTATGGCTAGACGTTGACATATATTCTCTCTTTAATAAAGATCATGGACGCAATAGAAATTTGCAAAAATCATTTATATTAATTGGTTAATATTAGCCATTAATCATATTGAATTCGTAAAGATGATGTTCAAGTCCGTCATTCTAGCTTCATAATGTTTTTGAGTCTGGTTAGTTAAAACTTTATCCAACTTAGACCATGAAACATTCCCTTGCAATTATCACGAAACATTTGTTTGCCCTTTTTGCTTCCGATGTGGAATTATAGCAGGAGTCAAAGGCGTGGTGTTGAAATATCTTGTGTTTTGTATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGGTATGCGTTTCAAGTTCTTTCCCTACCCTTATCCCACATCTTTATATGAACTTTGAAAATTTAAAGGGAGCTTTGCCATTTTTACAGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGGTCCTTAAAATTCTCATGGGGCTGTAATGGTTTTGACGATTGACTCTCCCCATTTATGATTTCTGAAAATAGCAATCTGAAGATGCATTTTGCTGCACAATTAAAGTTATCCAGAGGGTTAATGCCGCCAACTTGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAGTTTGTTTTGTTTTGATTGGGTTAGTTCTTTGTTTTTCTGCTTACTAAATCTGTACTTGTATTTACTTTAACGTCTTAATTAACGTGGAAAATTTGGGTTTATTTTGGTTGCACTTCGGGTCTTGTTTATGTTAGTCGTGTAAACTTCTTCCCATAAAATTATCCGTCTTTAAAGAATGAATTATTTTATCTTACATTTGAACAATGGTTAGCTATTATAAACTTAAAAAATGCCAATAGGTTGAAACGATGGGGGTGGTGTGGTTGATTTTGTTGAAATTCAGTTGACAAGACTAGTGCCAGCATGGGTATTAGCTCAATTAATTTTCAAAATTTTTATAGAGTAATCATCTAGATTATTGTGTTTATTTTGTGGTGGTGTAAGATGCCCGCCCATTTGAAGATTCTCCTACATCCTATAATGTTCTCGTGGAGGACACTTCGAGAGTTTTGAATTTCCTCCAAAAACATGAGTTTTTTTTGGATTCCCGTATTGGGTCATCTTCTTTTTATTTTAACTTTTTTTTTCATTTGTATATATAAATTTTACTCTTCTTTATTTTCATTTTATAATTAAAATAAATATGCTCAAATATGTATTTTATTATCTTTGATTACCTTGCAATTATTTTATTTTGTTTAGTAAGATATCCAAATTTATATTTAAATTAATATTTATGTTATAAAAAACTATTAAATTAGTACATATTATTTTGTTGAGAAAGATATAAAGTTTTTAAAGAAAAAAATCTTAGATTAATATATATTAATAAAAAAAAATTATGTTATAAGTTTAAATTATATTTAACTAATTATAAAGTAATTAATAGTTGTAAGTACATTCTTAGAACATGTAAATTTCTGACATTCTCAAGTAGTTCTACGAAACAAACATAGTTATCCAAGTATTCTCATATATCTTCAAAATATTTCTAGGCATCTATAATTTCAGATATCTAAAGATTGCAATTCTCTACCTTCTCAAAAAACAAACGACCTGTCAAAGTAGAAGTTTAAATATTTTGCCCATATATTTAACTCAACCATATATTATTGAACTCAAAAAAGAATAGATGAGACTTGTCATTGTTCAAGTATTGTCACCAATTTTTACCTTTTCTGTTTTCTAATAAATAGATGGATGAAAAATACAAAAAGTAATTTGCACTTTCAAGGTTTAATATAATCTGTGATGCAACGAGAAAAGTGAATTGAGAACATAAAATCACATATTTGGCAATTATTTTAGCTATTGGAAAATCGCTATAGGACAAAAGAAGAGGAAGCAAGATGGTGTTAGGATACCATTGTAATTTACAGATGGGAGGGTTGCATATGGGCTCACAGAAAAAACTGACACCTACAAAACAAAATATATATATATATATATATTTATATATATATATATATTAAATATTGTAAATTTATATCAGCATAGGGCCGGAATGCAGTAGGGTCTTCAAGCCCCACGCTCAATTCTCGAGATTCATGGGCCGTCTCGCGAAGATCTTCGATCTGAACCTTCGCATCGACTTTCTCTGTCAGTCTCAACCACGCCTTCGCTATCGCAAGAATATAGCGATGGAATAGCTATCGCTCACTCAGCTGCTTCGCGTATTATGAAAGCCGTATTGCCTAAGGGGGCATGCTGCAAGAGCGTAGGAGTGGTAATGTGAGAGGGACTTAAGACGCGGTAACAGGAGAGACTGGAAAGTAGGGTGTATCTTCAAAAAAGGTAACGTCGGCACTCGTAAAGAAGCGACGAAGCTCAGGAGAACGAGACCCCTATTTTAAAAGCTATGCTGATATGTTTGTTGATACTATTAACACCTGATTGCTATATTTGCAACTAGAGCAAATTCCATTAGCAAACAATGGGGCTTGTGAAAAGGATACAAGTCTTGAATATTTATTGATTTTACTCATCCAAAAAGGCCTCTACATCAACTAATACTGTTTGGTAAAAAAAAAAATGATAATTATGATATAGCAGTGGCATGGGACCGCCCGTTCCTTCTCCCAATATCCAACTGCCGCTTTTATGGTTGCTATGCTTAATGGACCTGAGCTGACCTCTCCCCAATTTGTGCATTCAAGGAGTTTAGAATGCCCCATTCTCCTTACTGTTGTTGCACTCACTAAACTCACCACAGGAAGAATCATTTCGACTCGGCCGCCGACTTCCTCAGCTAACACTGTACCTTATTTTACATTCTTGGGACTAGTTGACATTCCATAACCGAGCTGCTCGAAGGTTCCAAAAGAGATACAGATAGACTAAGGGAGCAAGCAGTGGTCTGTGGCTAGCAACACAATTGAAATGGATTACAGCAGCAGTTTCCAGTACATCCACAACAGCTTTTGCTACCAAAACAGCAACAAGGTCGTATATTTGGACATTTTCCTAACGTGCATTTGCATTTGCATTTGCATTCGCAGCATGGACAATCTAGGCAGGAGCAGGAAGGTAATGAAAAATGGCTACAACATTGAGTGCATGAGATGGTTGGACAAGGGCATGTGCATTGGGGTAATGTTGGGCAAGTGCAACAACATTGGCCACACTGCCCACAACACTCCCTGCACTCTCCGCAACACTGCCACTTCGGTAATTTACAGCTGCCGCATGATAAGCATTTACATGGGTTATTACAATTGCAGCAGGGTGGGATTTCGAGATGGATCGAGCATCCAGCATAACAGCAACAGCAAAT

mRNA sequence

ATGGCCACCTTGGACTCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGTCTCAACCACGCCTTCGCTATCGCAAGAATATAGCGATGGAATAGCTATCGCTCACTCAGCTGCTTCGCGTATTATGAAAGCCGTATTGCCTAAGGGGGCATGCTGCAAGAGCGTAGGAGTGCAGTGGCATGGGACCGCCCGTTCCTTCTCCCAATATCCAACTGCCGCTTTTATGGTTGCTATGCTTAATGGACCTGAGCTGACCTCTCCCCAATTTGTGCATTCAAGGAGTTTAGAATGCCCCATTCTCCTTACTGTTGTTGCACTCACTAAACTCACCACAGGAAGAATCATTTCGACTCGGCCGCCGACTTCCTCAGCTAACACTGTACCTTATTTTACATTCTTGGGACTAGTTGACATTCCATAACCGAGCTGCTCGAAGGTTCCAAAAGAGATACAGATAGACTAAGGGAGCAAGCAGTGGTCTGTGGCTAGCAACACAATTGAAATGGATTACAGCAGCAGTTTCCAGTACATCCACAACAGCTTTTGCTACCAAAACAGCAACAAGGTCGTATATTTGGACATTTTCCTAACGTGCATTTGCATTTGCATTTGCATTCGCAGCATGGACAATCTAGGCAGGAGCAGGAAGGTAATGAAAAATGGCTACAACATTGAGTGCATGAGATGGTTGGACAAGGGCATGTGCATTGGGGTAATGTTGGGCAAGTGCAACAACATTGGCCACACTGCCCACAACACTCCCTGCACTCTCCGCAACACTGCCACTTCGGTAATTTACAGCTGCCGCATGATAAGCATTTACATGGGTTATTACAATTGCAGCAGGGTGGGATTTCGAGATGGATCGAGCATCCAGCATAACAGCAACAGCAAAT

Coding sequence (CDS)

ATGGCCACCTTGGACTCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGTCTCAACCACGCCTTCGCTATCGCAAGAATATAGCGATGGAATAGCTATCGCTCACTCAGCTGCTTCGCGTATTATGAAAGCCGTATTGCCTAAGGGGGCATGCTGCAAGAGCGTAGGAGTGCAGTGGCATGGGACCGCCCGTTCCTTCTCCCAATATCCAACTGCCGCTTTTATGGTTGCTATGCTTAATGGACCTGAGCTGACCTCTCCCCAATTTGTGCATTCAAGGAGTTTAGAATGCCCCATTCTCCTTACTGTTGTTGCACTCACTAAACTCACCACAGGAAGAATCATTTCGACTCGGCCGCCGACTTCCTCAGCTAACACTGTACCTTATTTTACATTCTTGGGACTAGTTGACATTCCATAA

Protein sequence

MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYVSTTPSLSQEYSDGIAIAHSAASRIMKAVLPKGACCKSVGVQWHGTARSFSQYPTAAFMVAMLNGPELTSPQFVHSRSLECPILLTVVALTKLTTGRIISTRPPTSSANTVPYFTFLGLVDIP

Homology

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BLAST of ClCG11G001410 vs. NCBI nr
Match: XP_038889977.1 (RING-box protein 1a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 6.0e-62
Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAG+ASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. NCBI nr
Match: XP_022933228.1 (RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cucurbita moschata] >XP_022968584.1 RING-box protein 1a [Cucurbita maxima] >XP_022988432.1 RING-box protein 1a [Cucurbita maxima] >XP_023515504.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >XP_023530609.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >KAG6588086.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021972.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590039.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023702.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 7.9e-62
Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 248.1 bits (632), Expect = 7.9e-62
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. NCBI nr
Match: XP_008342455.1 (RING-box protein 1a [Malus domestica] >XP_008375895.1 RING-box protein 1a [Malus domestica] >XP_009375862.1 PREDICTED: RING-box protein 1a [Pyrus x bretschneideri] >KAB2595551.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >TQD69625.1 hypothetical protein C1H46_044843 [Malus baccata] >KAB2595590.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >KAB2626676.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >RXH93564.1 hypothetical protein DVH24_014140 [Malus domestica])

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-61
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPM+PAGE SSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. NCBI nr
Match: XP_004144035.1 (RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protein 1a [Cucumis melo] >XP_038879722.1 RING-box protein 1a [Benincasa hispida] >KAA0055771.1 RING-box protein 1a [Cucumis melo var. makuwa] >KGN66305.1 hypothetical protein Csa_007202 [Cucumis sativus] >TYK10022.1 RING-box protein 1a [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-61
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.0e-59
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116

[Close]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.9e-51
Identity = 98/116 (84.48%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKY
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKY 113

[Close]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKY
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 106

[Close]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 90/106 (84.91%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKY
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 106

[Close]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot
Match: Q8QG64 (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 3.2e-50
Identity = 89/106 (83.96%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + S  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKY
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 106

[Close]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL
Match: A0A6J1I027 (RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL
Match: A0A6J1F460 (RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 113/115 (98.26%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL
Match: A0A6P4A6G4 (RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL
Match: A0A6J1DPM4 (RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL
Match: A0A5N5F037 (RING-box protein 1a OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_020294 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 5.0e-62
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPM+PAGE SSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 115

[Close]

BLAST of ClCG11G001410 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-60
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116

[Close]

BLAST of ClCG11G001410 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-56
Identity = 107/140 (76.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISR 116
           DLCIECQANQASATSEECTVAW                        GVCNHAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]

BLAST of ClCG11G001410 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 215.3 bits (547), Expect = 5.3e-56
Identity = 106/134 (79.10%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWD-------------- 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 116
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 120

[Close]

BLAST of ClCG11G001410 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-52
Identity = 98/116 (84.48%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKY
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKY 113

[Close]

BLAST of ClCG11G001410 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-15
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 27  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 115
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of ClCG11G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889977.1	6.0e-62	98.26	RING-box protein 1a-like isoform X1 [Benincasa hispida]	[more]
XP_022933228.1	7.9e-62	98.26	RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cu...	[more]
XP_015889019.1	7.9e-62	98.26	RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [...	[more]
XP_008342455.1	1.0e-61	97.39	RING-box protein 1a [Malus domestica] >XP_008375895.1 RING-box protein 1a [Malus...	[more]
XP_004144035.1	1.8e-61	97.39	RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protei...	[more]

BLAST of ClCG11G001410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	5.0e-59	92.24	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	2.9e-51	84.48	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	1.1e-50	84.91	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	1.1e-50	84.91	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q8QG64	3.2e-50	83.96	RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2	[more]

BLAST of ClCG11G001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I027	3.8e-62	98.26	RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1	[more]
A0A6J1F460	3.8e-62	98.26	RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1	[more]
A0A6P4A6G4	3.8e-62	98.26	RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1	[more]
A0A6J1DPM4	3.8e-62	98.26	RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=...	[more]
A0A5N5F037	5.0e-62	97.39	RING-box protein 1a OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_02...	[more]

BLAST of ClCG11G001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	3.5e-60	92.24	RING-box 1	[more]
AT5G20570.2	4.0e-56	76.43	RING-box 1	[more]
AT5G20570.3	5.3e-56	79.10	RING-box 1	[more]
AT3G42830.1	2.1e-52	84.48	RING/U-box superfamily protein	[more]
AT3G05870.1	2.0e-15	39.56	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..117 e-value: 3.0E-34 score: 119.1
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 49..107 e-value: 8.5E-25 score: 86.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..115
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 1..115
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 49..110 e-value: 5.16623E-48 score: 150.597
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 29..114
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 62..107 score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G001410.2	ClCG11G001410.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding