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ClCG11G001225 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGGTAACAAAACTTTATCTTTACTTTTCATTAAAAAACCAATAAACCTGAAAAAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCAACCTAATGGCGAGATAGTTGGGGAGAAAGATGGACTATTTTGTGAAAGAATTTTGGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATTGGAGATAAAAAATAA MIDRYKHQQLRIGLVSPQQISAWANKTQPNGEIVGEKDGLFCERILGPIKSGICACGNYRVIGDKK Homology
BLAST of ClCG11G001225 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria]) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. NCBI nr
Match: YP_247590.2 (RNA polymerase beta' subunit [Cucumis sativus]) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo]) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria]) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. NCBI nr
Match: YP_009751644.1 (RNA polymerase beta' subunit [Hodgsonia heteroclita] >QIT04377.1 RNA polymerase beta' subunit [Hodgsonia heteroclita]) HSP 1 Score: 130.2 bits (326), Expect = 6.6e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3) HSP 1 Score: 130.2 bits (326), Expect = 8.7e-30 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 2.8e-28 Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 2.8e-28 Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy Swiss-Prot
Match: P60287 (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda OX=13333 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 6.2e-28 Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy Swiss-Prot
Match: Q7YJX9 (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 6.2e-28 Identity = 60/81 (74.07%), Postives = 62/81 (76.54%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 0
BLAST of ClCG11G001225 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 123.6 bits (309), Expect = 5.8e-29 Identity = 61/81 (75.31%), Postives = 62/81 (76.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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