ClCG10G021900 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G021900
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 36432190 .. 36435039 (-)
RNA-Seq ExpressionClCG10G021900
SyntenyClCG10G021900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGGTTTTAAGGAAAGATTAGGTTTTTTATATGTGTAATACAAGAGAAGGTTTGGCTAAAGATTAAGCAATGGGAAGTGGATTAGGTCAGAAAAAGAGATGAGTGGAGCCAACTGAGAATAAAAAGAAGAATGAGAAGAAGTAGAAGAGGGAGAGAAGAAAAAGGGGGAGCAAGAGAGAGACAACCACTCGATACTCTTCAGCATCATCGTTGCTTTTGAGGCGCAATGGAGGGGCCCTACGAGTTTCTCTTTTGTTGGCCATCTTGATTCCCATTTTCAGTAGAATCACAGAAATCCATCAGCATGGTAATGCTCCTCTTTCTCTCTATTTCTCTCTCCCTGTTGCTTGAGGCTAGAGAAATTTGTTAGTACTTACTCCTCTATCGTCTATTCTAAATGATATATTAGGAATGTTTAGGGCACTAAATTAATTTCTATAATTAGTAATTATAATAGTTTGTAGGTTATAATAGTAAGTTCAAACTATTTTAATCCAAGTTGTAATAGTATGTACTTGAAATGTAAATTATTTTAGCAAACTTTATATTTGCAACCCCAAAGATGGTAGCATGCACTGCCAACTTCAAGTTCGAGGGCCAAACACAGCCTATTCATTTTATAGGATCTACATTATTTTTTGAGAAAATATCAACTTTTACCTTAAATTTTAGGAGCTGTAACAATTTTAAATATGAACTAATAATTGTATCAATTTAGACTTTGAACTTTTGTAAATGTATCAATTTATAACCTCCACTTTGTTTTGTTTGGACAAACATCGTGTGAATCTAATAATTGAATCAACTGAAAATGGGAACCAATTTAGACTCTTAGACAATTTACTGTGAAACTTGTCCATACATTTACTCTAATTATCCATTTTGTAAAATTGACATTTGAAAAAGTCTACACATGTTTAAAAATTAATGCATGGATAATTTTGAAATGTAATCAGAAGGGTCTAATTTAGGAGTTTAATTAACTTAAATTATAAATTTCACACGATATCGATCTAATGAAATTTGGAGAGGGTGTAATTTGATACATTTTAAAAAATTTTAGGGCTTAAATTGATACAATTATTAGTTTAAGATTTTAATTGATATAACTATAAAGATTAAGTTATAAATCGATATTTGTTACTATTATTATAAAAAGTAATCTGGGGCGGAAGTTAGTAGGATAGCACTAGAATGGTTTCCGTGAGGTCACAGGCTGTGTTTTTTTAAAAAAAAATTATTTGAATGAGCAAAGCAAAAAAAGCTTTTTGTCATTCACTTTTTCTTTTCTTCTTTTAGTGTCCTTTGGCAGAAGAATTTGTGTTGAAAAATCTGCATGCTCTGAGATTTTTGCCCTTTTGACTGAGAAATAAAGGTAAGGGGGGCCTTAATTGAATTCTTCATCTGCCTGTTGACTCCCCCTCCCATGTCTCTCCTTCTGTTCAACACCTTTAATTATACTCTGTACGTCATTGTTTCTTTCCCCCTCTCTACTTTTTCCCTCTTGTCTTTCTTCCTTTCTTTTTCTTAACCAAATTTTGACAGCCATGCCATGGGATTGATCATTCCACACGCCAACATATACTCAACAGTATTATGCTATTCACAATCACCAACATAGAAAACCCTTTCCTTTTTTTCCTTTTTCATTTTATCATTTCCTACTCTTTCATCCATACCCATTTTCATCATTTTTAATCACCTTTTTTAAACATCAACTGTTCCAATTTCCCCTCCTCTATTTTATTTCCATTGAATGTTTTATCAAATGGTAAGCTATATTTTTTAGGCTTTTACGTTTACCAAACAAATGAAAGATAATTTGTGAGGTTTTATTAAATTATAAAGATTAAATTCTAACTTTTACAATGGTAGAGACTAAATATTAATTTACGGACTAAATCTATAATTTAACTTTAATATTAATCGGTCACATGTTAACATGTGAATGTTTGAGCACCATAGATGTTATTCTTCTATTATTATTATTTTTTTTTAAAGAAAAATGTGTGAATCAGTATTTTGAGACATTGACCACTTTAATATAATTCATCCATCAGCATCACCATGATGTCTATTTTTGTTTAATTTCTATGAAGAACGTGTCGTCTGAAAATTGTATTAGGTTGAAAATGATAGTTTCACGTTTAATTGTCCTTATGATTATTTTATAATTTAAAGTTAAACAAGGATTAATCATGATTAATGAGCAACTTGATGTTTTCTTTTTAACAAATCTTTGATCAACCAATTTGACCGATTCTTTCAAAAAGCTCCTCTTTTAGATCATGCAAGTTTCAAAATAAAGTGGTTTTTCAGTCAGGGATACCATTAATAATTAATAAAATAATGATCAATTCTGGCGGTAATTCTTTTTTACCGTTCACACCAAATATTGTTGAAGTAATACTCTCTTGTAAAAAAATGTTTTTTATAATTTTATTTTATGCTAGATTATCGCTTGTCACGTCAAATTTTACTGTAGTTAAATCTTAATAATTATTTTTAAAGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

mRNA sequence

ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

Coding sequence (CDS)

ATGAAAACAAAAGAATGGGGCTTAATTAAGAAACCCTCCACTGTGGGAAAATTGAAGAAGATTGATTCAGTCGGCAGTAAGGCTGAAAGCGAGCGTTTAGTTTACGCTCAAATAGATATATCATTTATATATGGGCGTCATACGAGTGAAGCACCAGGAACTTTTACCTACCCTTTAGAAAACTTTGGACCCCATGAAAAAAACTTTGAAGAATATGCTTACAACTCCTCTAATTCTTGGTTTGCAATTGAAGGATTCGATGGATCGAAGGATATATGGGCTTGCAAACCCTTCTGGGTAGGGGCAAAAGCTGATACGGCCCAAAATGTCAAAACGGGCTGA

Protein sequence

MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLENFGPHEKNFEEYAYNSSNSWFAIEGFDGSKDIWACKPFWVGAKADTAQNVKTG
Homology
[Close]
BLAST of ClCG10G021900 vs. NCBI nr
Match: KGN58787.1 (hypothetical protein Csa_002358 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0 

Query: 1  MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLE 60
          MKTKEWGLIK+ S VG+LK IDSVGSKA+ ERL YAQID+SFIYG   ++APGTFTYPLE
Sbjct: 1  MKTKEWGLIKQLSAVGRLKMIDSVGSKAQVERLDYAQIDMSFIYGCQMNDAPGTFTYPLE 60

Query: 61 NFGPHEKNFE 71
          NFGPH+K  +
Sbjct: 61 NFGPHKKTLK 70

[Close]
BLAST of ClCG10G021900 vs. ExPASy TrEMBL
Match: A0A0A0LDH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732450 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0 

Query: 1  MKTKEWGLIKKPSTVGKLKKIDSVGSKAESERLVYAQIDISFIYGRHTSEAPGTFTYPLE 60
          MKTKEWGLIK+ S VG+LK IDSVGSKA+ ERL YAQID+SFIYG   ++APGTFTYPLE
Sbjct: 1  MKTKEWGLIKQLSAVGRLKMIDSVGSKAQVERLDYAQIDMSFIYGCQMNDAPGTFTYPLE 60

Query: 61 NFGPHEKNFE 71
          NFGPH+K  +
Sbjct: 61 NFGPHKKTLK 70

The following BLAST results are available for this feature:
BLAST of ClCG10G021900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58787.13.5e-2074.29hypothetical protein Csa_002358 [Cucumis sativus][more]
BLAST of ClCG10G021900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG10G021900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDH11.7e-2074.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732450 PE=4 SV=1[more]
BLAST of ClCG10G021900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G021900.2ClCG10G021900.2mRNA