ClCG10G020250 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G020250
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Patatin
Location	CG_Chr10: 35098784 .. 35099152 (-)
RNA-Seq Expression	ClCG10G020250
Synteny	ClCG10G020250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACAGCAGTTTCATCTTCTTCGTCGGTAAAGCTCATTACTATTTTGAGCATTGACGGCGGCGGAATCCGAGGTCTCATTCCGGCCACCATCCTCACCTTTCTTGAGTCTGAACTTCAGGTACTTCACCATCCTCACCTTCCAACCCACCAATTCACAACTGAGGTCCTCAACGATTAGAGTTAGGGATTTTAACCTCATTGATGGCGGTGAGCGAAGCAGTGAAGGATACAATAGAAGGATGTGGCGGCTCATCGTCTTCCCTACAATTTCTTGTGATATCTCTAGGGACGGGCTCGCCAAGAGTGGAAGCGCATAAATACACCGCCAACAAAGCTAAGAACTGGGGTTTATTACAATGCTTAA

mRNA sequence

ATGAACACAGCAGTTTCATCTTCTTCGTCGGTAAAGCTCATTACTATTTTGAGCATTGACGGCGGCGGAATCCGAGGTCTCATTCCGGCCACCATCCTCACCTTTCTTGAGTCTGAACTTCAGGGACGGGCTCGCCAAGAGTGGAAGCGCATAAATACACCGCCAACAAAGCTAAGAACTGGGGTTTATTACAATGCTTAA

Coding sequence (CDS)

ATGAACACAGCAGTTTCATCTTCTTCGTCGGTAAAGCTCATTACTATTTTGAGCATTGACGGCGGCGGAATCCGAGGTCTCATTCCGGCCACCATCCTCACCTTTCTTGAGTCTGAACTTCAGGGACGGGCTCGCCAAGAGTGGAAGCGCATAAATACACCGCCAACAAAGCTAAGAACTGGGGTTTATTACAATGCTTAA

Protein sequence

MNTAVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQGRARQEWKRINTPPTKLRTGVYYNA

Homology

[Close]

BLAST of ClCG10G020250 vs. NCBI nr
Match: KQJ98662.1 (hypothetical protein BRADI_3g38310v3 [Brachypodium distachyon])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 4   AVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
           A++SS  VKLIT+LSIDGGG+RG+IPAT+L FLE EL+
Sbjct: 72  ALNSSDKVKLITVLSIDGGGVRGIIPATVLAFLEEELK 109

[Close]

BLAST of ClCG10G020250 vs. NCBI nr
Match: XP_003574632.2 (patatin-like protein 2 [Brachypodium distachyon] >XP_014757106.1 patatin-like protein 2 [Brachypodium distachyon])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 4  AVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
          A++SS  VKLIT+LSIDGGG+RG+IPAT+L FLE EL+
Sbjct: 58 ALNSSDKVKLITVLSIDGGGVRGIIPATVLAFLEEELK 95

[Close]

BLAST of ClCG10G020250 vs. NCBI nr
Match: CAA7395764.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          KLITILSIDGGG+RG+IPATILTFLESELQ
Sbjct: 5  KLITILSIDGGGVRGIIPATILTFLESELQ 34

[Close]

BLAST of ClCG10G020250 vs. NCBI nr
Match: CAA2619703.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          KLITILSIDGGG+RG+IPATILTFLESELQ
Sbjct: 5  KLITILSIDGGGVRGIIPATILTFLESELQ 34

[Close]

BLAST of ClCG10G020250 vs. NCBI nr
Match: XP_009370175.1 (PREDICTED: patatin-like protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          K++T+LSIDGGGIRGLIPATILTFLESELQ
Sbjct: 15 KIVTVLSIDGGGIRGLIPATILTFLESELQ 44

[Close]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot
Match: A2YW91 (Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 6  SSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
          SS   VK++T+LSIDGGG+RG+IPATIL FLE ELQ
Sbjct: 13 SSPEKVKMVTVLSIDGGGVRGIIPATILAFLEKELQ 48

[Close]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot
Match: Q6ZJD3 (Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 6  SSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
          SS   VK++T+LSIDGGG+RG+IPATIL FLE ELQ
Sbjct: 13 SSPEKVKMVTVLSIDGGGVRGIIPATILAFLEKELQ 48

[Close]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot
Match: O48723 (Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 13 LITILSIDGGGIRGLIPATILTFLESELQ 42
          L+TILSIDGGGIRGLIPA IL FLESELQ
Sbjct: 18 LVTILSIDGGGIRGLIPAVILGFLESELQ 46

[Close]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot
Match: O23181 (Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 6.7e-06
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          +L+TILSIDGGGIRG+IP TIL +LES+LQ
Sbjct: 33 QLVTILSIDGGGIRGIIPGTILAYLESQLQ 62

[Close]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot
Match: Q8LPW4 (Patatin-17 OS=Solanum cardiophyllum OX=160510 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1  MNTAVSSSSSVKL---ITILSIDGGGIRGLIPATILTFLESELQ 42
          M  A +SS+  +L   +T+LSIDGGGIRG+IPATIL FLE +LQ
Sbjct: 13 MILATTSSTFAQLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQ 56

[Close]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL
Match: A0A0Q3FHI6 (Patatin OS=Brachypodium distachyon OX=15368 GN=BRADI_3g38310v3 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 4   AVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
           A++SS  VKLIT+LSIDGGG+RG+IPAT+L FLE EL+
Sbjct: 72  ALNSSDKVKLITVLSIDGGGVRGIIPATVLAFLEEELK 109

[Close]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL
Match: A0A7I8KEW5 (Patatin OS=Spirodela intermedia OX=51605 GN=SI8410_05006427 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          KLITILSIDGGG+RG+IPATILTFLESELQ
Sbjct: 5  KLITILSIDGGGVRGIIPATILTFLESELQ 34

[Close]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL
Match: A0A7I8INU5 (Patatin OS=Spirodela intermedia OX=51605 GN=SI7747_05005872 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          KLITILSIDGGG+RG+IPATILTFLESELQ
Sbjct: 5  KLITILSIDGGGVRGIIPATILTFLESELQ 34

[Close]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL
Match: A0A251TTS6 (Patatin OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0245981 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1  MNTAVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQGRARQEWKRI 52
          M    S  +S KLIT+LSIDGGGIRGLIPATIL FLE++L+  A  E  RI
Sbjct: 1  MERTKSIPASGKLITVLSIDGGGIRGLIPATILDFLETQLKELANDEGARI 51

[Close]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL
Match: A0A6P5TNJ1 (Patatin OS=Prunus avium OX=42229 GN=LOC110769556 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 2  NTAVSSSSSVKLITILSIDGGGIRGLIPATILTFLESELQ 42
          N+ V   S  K+ITILSIDGGGIRGLIPATIL+FLESELQ
Sbjct: 5  NSIVVPPSYGKMITILSIDGGGIRGLIPATILSFLESELQ 44

[Close]

BLAST of ClCG10G020250 vs. TAIR 10
Match: AT2G26560.1 (phospholipase A 2A )

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-07
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 13 LITILSIDGGGIRGLIPATILTFLESELQ 42
          L+TILSIDGGGIRGLIPA IL FLESELQ
Sbjct: 18 LVTILSIDGGGIRGLIPAVILGFLESELQ 46

[Close]

BLAST of ClCG10G020250 vs. TAIR 10
Match: AT4G37050.1 (PATATIN-like protein 4 )

HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 12 KLITILSIDGGGIRGLIPATILTFLESELQ 42
          +L+TILSIDGGGIRG+IP TIL +LES+LQ
Sbjct: 33 QLVTILSIDGGGIRGIIPGTILAYLESQLQ 62

[Close]

BLAST of ClCG10G020250 vs. TAIR 10
Match: AT4G37070.2 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 13 LITILSIDGGGIRGLIPATILTFLESELQ 42
          L+TILS+DGGG+RG+I   IL FLE +LQ
Sbjct: 18 LVTILSLDGGGVRGIIAGVILAFLEKQLQ 46

[Close]

BLAST of ClCG10G020250 vs. TAIR 10
Match: AT4G37070.3 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 13 LITILSIDGGGIRGLIPATILTFLESELQ 42
          L+TILS+DGGG+RG+I   IL FLE +LQ
Sbjct: 18 LVTILSLDGGGVRGIIAGVILAFLEKQLQ 46

[Close]

BLAST of ClCG10G020250 vs. TAIR 10
Match: AT4G37070.1 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 13 LITILSIDGGGIRGLIPATILTFLESELQ 42
          L+TILS+DGGG+RG+I   IL FLE +LQ
Sbjct: 18 LVTILSLDGGGVRGIIAGVILAFLEKQLQ 46

The following BLAST results are available for this feature:

BLAST of ClCG10G020250 vs. NCBI nr


Match Name	E-value	Identity	Description
KQJ98662.1	3.2e-05	71.05	hypothetical protein BRADI_3g38310v3 [Brachypodium distachyon]	[more]
XP_003574632.2	3.2e-05	71.05	patatin-like protein 2 [Brachypodium distachyon] >XP_014757106.1 patatin-like pr...	[more]
CAA7395764.1	3.2e-05	93.33	unnamed protein product [Spirodela intermedia]	[more]
CAA2619703.1	3.2e-05	93.33	unnamed protein product [Spirodela intermedia]	[more]
XP_009370175.1	4.2e-05	90.00	PREDICTED: patatin-like protein 2 [Pyrus x bretschneideri]	[more]

BLAST of ClCG10G020250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YW91	1.6e-07	72.22	Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1	[more]
Q6ZJD3	1.6e-07	72.22	Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=...	[more]
O48723	3.0e-06	89.66	Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1	[more]
O23181	6.7e-06	76.67	Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2	[more]
Q8LPW4	2.0e-05	61.36	Patatin-17 OS=Solanum cardiophyllum OX=160510 PE=1 SV=1	[more]

BLAST of ClCG10G020250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0Q3FHI6	1.6e-05	71.05	Patatin OS=Brachypodium distachyon OX=15368 GN=BRADI_3g38310v3 PE=3 SV=1	[more]
A0A7I8KEW5	1.6e-05	93.33	Patatin OS=Spirodela intermedia OX=51605 GN=SI8410_05006427 PE=3 SV=1	[more]
A0A7I8INU5	1.6e-05	93.33	Patatin OS=Spirodela intermedia OX=51605 GN=SI7747_05005872 PE=3 SV=1	[more]
A0A251TTS6	2.0e-05	62.75	Patatin OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0245981 PE=3 SV=1	[more]
A0A6P5TNJ1	2.0e-05	77.50	Patatin OS=Prunus avium OX=42229 GN=LOC110769556 PE=3 SV=1	[more]

BLAST of ClCG10G020250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26560.1	2.1e-07	89.66	phospholipase A 2A	[more]
AT4G37050.1	4.8e-07	76.67	PATATIN-like protein 4	[more]
AT4G37070.2	7.6e-05	65.52	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]
AT4G37070.3	7.6e-05	65.52	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]
AT4G37070.1	7.6e-05	65.52	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1090.10	Cytosolic phospholipase A2 catalytic domain	coord: 2..56 e-value: 3.9E-10 score: 41.5
IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	SUPERFAMILY	52151	FabD/lysophospholipase-like	coord: 14..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G020250.1	ClCG10G020250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
molecular_function	GO:0047372	acylglycerol lipase activity
molecular_function	GO:0004620	phospholipase activity