ClCG10G017877 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATTTCTTTCATGGAATGTTCGTGGACTCAACTGTTGGAGGAAACGTACTATGGTTAAAAAGCTCATTCAACAACAAAACTCGGATATTGTGCTTTTACAAGAAACAAAGCTGTCTTCTGTGGTTTCCCTTGTGATTAAAACAATATGGAGCTCTGCTTACATTGGTTGGACATCCTTGGATGCAATTGATTCTTTAGCGGTATTCTCATTCTTTGGAGTGAACCAGACATCTCCGTCAATGAAGTTATTCAAGGAAAATTTTTGGTCTCTATTCAGGTATCTTTGGCTGATGGTTTCTCTTTTAAACTTACGGCTATTTATGGCCCGTCCTATAATGCCTACCATGCTGATTTTTGGCAAGAGCTTGATGACTTGGCTGGTTTTGGTGTGATAATTGGGTTATTGGTGGTGATTTTAATGTCACTCGCTGGACATGGGAGAAATCACATGACTGAATGATTTCATCTAGTATGCGTGCTTTTAATCATTGGATAACTAACTATCAGCTCTGTGATATTCCTTTATCAAATGGCCGCTTTACATGGTCCAGTTCTTTTTCCTCACGGAAAATTGTCTACAAAAGTTCAGAATTGTTACCCTTAAACGATTGGAGAGAACAACATCGGATCACTTTCCTTTGGCTTTATCTTCGGGAAGCATTGTTTGGGGCCCCTGCCCTTTCAGATTTGAAAATTCATGGCTGCAAAACCCTTCTTTTCGTTCTATGGTTGAGGTTTGGTGGAGTCAAACACCCCATTACAGATTGGCCAGGACATGGTTTAATGATGAAATTGCATGGTTTGAAATTGGCTATGCGGGAATGGAATAACTCATATCATAGAGAGACTGTTACTCTTTCGGATCTTGTGAGACTCAATTATCACAACTAGATAACTTAGAGGGTATAGTTTGCTTGAATGAAGATCAGATTAATAGACGTCGATTGCTTCGCGAACAGATTGAAAATTTGACGATCCAAGACCACATTCATTGGCAGCAACGTTGTAAACTTAAGTGGCTTATTGAGGGGGATGAAAATACTAGATTTTTCACCGTATTGTTGTTGCCTGCTGCAGAAAATCTCCATAACGAAAATATTAACCAGGGATGGTATTAATCTTTTGACTGCTCAAGCCATTGAAACGGAATTTCTATCTTTCTATTTAGCTCTTTTTACGAAAGATGGCAACCAACGGTTTCTTCTGACTAATCTAGACTGGAGAACTATTTCTCATGCTTAAGCTACTGATCTAGAGCGGCCTTTTACAGAAGAGGAGATTTATTTAGCTGTTTGTTCTCTTGGAACTAATAAATCTCCTGGCCCTGACGGCTTTACTGTTGAATTCTTCAAGTGCTTCTAGTCTACTTTCAAATATGATATGATGTTATTATTTAACGGCTTCTACAATTTTGGGGTTATTAATGTTAAGTTAAATGAAACTTATCTGCCTAATCCCCAAGAAAGTGGACTCTAAAACGGTTTCCGATTACAGGCCTATCAGCTTTATTCCTTGCGCATATATGATTGTTGCTCGTGTTCTCTCCAACCGACTTAAATAGGTCCTACCTTTCACTATTGCACCAAATCAGTTAGCTTTTGTGGCCAATAGACAAATTCTCGATGCCTCTCTGATGGCGAATGAACTCATTGATGATTGGAGCTCTTCTCAGAAATCAGGGATTGTTCTTAAGCTGGATCTTGAAAAGGCTTTTGACATGGTTGATTAGGAGTTTCTTGATATCGTTTTGCGTATTAAAGGCTTCGGTTCTCTTTGGCGTAATTGGATTAACGGTTGTCTCTCTAGTGCAAACTATTCCATTATTTTAAATGGTCGTCCTCGTGGCAAGATCATCCCTACTCGTCGTATTAGACAGGGAGATCCCCTTTCTCCCTTTTTATTTATCATTGTTGCAAACTGCTTGAGTCGTCTTCTTGCTCACAGTTCCTCTTTGGGCCTCACTATTGCTCGTCCTATTGGTCAGTCATCCTTTTCGATTAATCATATACAGTTTGCAGACGATACATTGCTCTTTAATTTATTTGATGTGATTCACATTTTTGAATGTGCTTCTGGACTCAAAATCAACCTTGCTAAGAGTGAGCTCCTTGGGATACACATCTCTGATATTGAGATAGATAAATGGTTGAACACTTTTGGTTGTAAAAGAGGTTTTTGGCCTTCTTCTTATCTTGGTCTTCCGTTGGGTGGTAACTCTTCATCTGTAGCTTTTTGGCAGCCTGTGGTCAAACGATTTCAGCATAAACTTCACAACTGGAAGTATGCTTATATAACGAAAGGGGGGAGACATACGCTTATTCAAGCTACTCTTTCTAGCCTCCCTACTTATTACTTGTCGTTGTTTCGTGCTCCCTCCTCTGTTATTAGTTGCCTTGATAAGCTGACGCGTGATTTCTTTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATGTTAATTGGGCCATTTTGCAGCGGCCCCAATTATATCAAGTGGCATGGGGATTGGTAACTATAAATGTCGTAATTCTGCTCTTCTTGCAAAATGGACGTGGTGTTTCATTATTGAATTGGATTCCTTATGGAGACAACTTATTTCAAAGTTCTATTCACCTGATTGTATTTGGCCCTCTCCGATATCTCGTGGGTCATCTAAAGCACCTTGGAGATCCATTTGCCATTATATGGATTTGGTTGTGGATCGGGTCTCCCGTCGCCTTGGAGATGGTGTTTCTACATCTTTTTGGCATGATTCTTGGCTCAGATGTGGTGTACTAG ATGAAATTTCTTTCATGGAATGTTCGTGGACTCAACTGTTGGAGGAAACGTACTATGGTTAAAAAGCTCATTCAACAACAAAACTCGGATATTGTGCTTTTACAAGAAACAAAGCTGTCTTCTGTGGTTTCCCTTGTGATTAAAACAATATGGAGCTCTGCTTACATTGGTTGGACATCCTTGGATGCAATTGATTCTTTAGCGGTATCTTTGGCTGATGGTTTCTCTTTTAAACTTACGGCTATTTATGGCCCGTCCTATAATGCCTACCATGCTGATTTTTGGCAAGAGCTTGATGACTTGGCTGGTTTTGGTGTGATAATTGGGTTATTGGTGCTCTGTGATATTCCTTTATCAAATGGCCGCTTTACATGGTCCAGTTCTTTTTCCTCACGGAAAATTGTCTACAAAAGTTCAGAATTGTTACCCTTAAACGATTGGAGAGAACAACATCGGATCACTTTCCTTTGGCTTTATCTTCGGGAAGCATTGTTTGGGGCCCCTGCCCTTTCAGATTTGAAAATTCATGGCTGCAAAACCCTTCTTTTCGTTCTATGGTTGAGGTTTGGTGGAGTCAAACACCCCATTACAGATTGGCCAGGACATGGTTTAATGATGAAATTGCATGGTTTGAAATTGGCTATGCGGGAATGGAATAACTCATATCATAGAGAGACTGTTACTCTTTCGGATCTTGAGTTTCTTGATATCGTTTTGCGTATTAAAGGCTTCGGTTCTCTTTGGCGTAATTGGATTAACGGTTGTCTCTCTAGTGCAAACTATTCCATTATTTTAAATGGTCGTCCTCGTGGCAAGATCATCCCTACTCGTCGTATTAGACAGGGAGATCCCCTTTCTCCCTTTTTATTTATCATTGTTGCAAACTGCTTGAGTCGTCTTCTTGCTCACAGTTCCTCTTTGGGCCTCACTATTGCTCGTCCTATTGGTCAGTCATCCTTTTCGATTAATCATATACAGTTTGCAGACGATACATTGCTCTTTAATTTATTTGATGTGATTCACATTTTTGAATGTGCTTCTGGACTCAAAATCAACCTTGCTAAGAGTGAGCTCCTTGGGATACACATCTCTGATATTGAGATAGATAAATGGTTGAACACTTTTGGTTGTAAAAGAGGTTTTTGGCCTTCTTCTTATCTTGGTCTTCCGTTGGGTGGTAACTCTTCATCTGTAGCTTTTTGGCAGCCTGTGGTCAAACGATTTCAGCATAAACTTCACAACTGGAAGTATGCTTATATAACGAAAGGGGGGAGACATACGCTTATTCAAGCTACTCTTTCTAGCCTCCCTACTTATTACTTGTCGTTGTTTCGTGCTCCCTCCTCTGTTATTAGTTGCCTTGATAAGCTGACGCGTGATTTCTTTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATGTTAATTGGGCCATTTTGCAGCGGCCCCAATTATATCAAGTGGCATGGGGATTGGTAACTATAAATGTCGTAATTCTGCTCTTCTTGCAAAATGGACGTGGTGTTTCATTATTGAATTGGATTCCTTATGGAGACAACTTATTTCAAAGTTCTATTCACCTGATTGTATTTGGCCCTCTCCGATATCTCGTGGGTCATCTAAAGCACCTTGGAGATCCATTTGCCATTATATGGATTTGGTTGTGGATCGGGTCTCCCGTCGCCTTGGAGATGGTGTTTCTACATCTTTTTGGCATGATTCTTGGCTCAGATGTGGTGTACTAG ATGAAATTTCTTTCATGGAATGTTCGTGGACTCAACTGTTGGAGGAAACGTACTATGGTTAAAAAGCTCATTCAACAACAAAACTCGGATATTGTGCTTTTACAAGAAACAAAGCTGTCTTCTGTGGTTTCCCTTGTGATTAAAACAATATGGAGCTCTGCTTACATTGGTTGGACATCCTTGGATGCAATTGATTCTTTAGCGGTATCTTTGGCTGATGGTTTCTCTTTTAAACTTACGGCTATTTATGGCCCGTCCTATAATGCCTACCATGCTGATTTTTGGCAAGAGCTTGATGACTTGGCTGGTTTTGGTGTGATAATTGGGTTATTGGTGCTCTGTGATATTCCTTTATCAAATGGCCGCTTTACATGGTCCAGTTCTTTTTCCTCACGGAAAATTGTCTACAAAAGTTCAGAATTGTTACCCTTAAACGATTGGAGAGAACAACATCGGATCACTTTCCTTTGGCTTTATCTTCGGGAAGCATTGTTTGGGGCCCCTGCCCTTTCAGATTTGAAAATTCATGGCTGCAAAACCCTTCTTTTCGTTCTATGGTTGAGGTTTGGTGGAGTCAAACACCCCATTACAGATTGGCCAGGACATGGTTTAATGATGAAATTGCATGGTTTGAAATTGGCTATGCGGGAATGGAATAACTCATATCATAGAGAGACTGTTACTCTTTCGGATCTTGAGTTTCTTGATATCGTTTTGCGTATTAAAGGCTTCGGTTCTCTTTGGCGTAATTGGATTAACGGTTGTCTCTCTAGTGCAAACTATTCCATTATTTTAAATGGTCGTCCTCGTGGCAAGATCATCCCTACTCGTCGTATTAGACAGGGAGATCCCCTTTCTCCCTTTTTATTTATCATTGTTGCAAACTGCTTGAGTCGTCTTCTTGCTCACAGTTCCTCTTTGGGCCTCACTATTGCTCGTCCTATTGGTCAGTCATCCTTTTCGATTAATCATATACAGTTTGCAGACGATACATTGCTCTTTAATTTATTTGATGTGATTCACATTTTTGAATGTGCTTCTGGACTCAAAATCAACCTTGCTAAGAGTGAGCTCCTTGGGATACACATCTCTGATATTGAGATAGATAAATGGTTGAACACTTTTGGTTGTAAAAGAGGTTTTTGGCCTTCTTCTTATCTTGGTCTTCCGTTGGGTGGTAACTCTTCATCTGTAGCTTTTTGGCAGCCTGTGGTCAAACGATTTCAGCATAAACTTCACAACTGGAAGTATGCTTATATAACGAAAGGGGGGAGACATACGCTTATTCAAGCTACTCTTTCTAGCCTCCCTACTTATTACTTGTCGTTGTTTCGTGCTCCCTCCTCTGTTATTAGTTGCCTTGATAAGCTGACGCGTGATTTCTTTTGGGAAGGTACTAGAGGTGATGGTGGCATGCACAATGTTAATTGGGCCATTTTGCAGCGGCCCCAATTATATCAAGTGGCATGGGGATTGGTAACTATAAATGTCGTAATTCTGCTCTTCTTGCAAAATGGACGTGGTGTTTCATTATTGAATTGGATTCCTTATGGAGACAACTTATTTCAAAGTTCTATTCACCTGATTGTATTTGGCCCTCTCCGATATCTCGTGGGTCATCTAAAGCACCTTGGAGATCCATTTGCCATTATATGGATTTGGTTGTGGATCGGGTCTCCCGTCGCCTTGGAGATGGTGTTTCTACATCTTTTTGGCATGATTCTTGGCTCAGATGTGGTGTACTAG MKFLSWNVRGLNCWRKRTMVKKLIQQQNSDIVLLQETKLSSVVSLVIKTIWSSAYIGWTSLDAIDSLAVSLADGFSFKLTAIYGPSYNAYHADFWQELDDLAGFGVIIGLLVLCDIPLSNGRFTWSSSFSSRKIVYKSSELLPLNDWREQHRITFLWLYLREALFGAPALSDLKIHGCKTLLFVLWLRFGGVKHPITDWPGHGLMMKLHGLKLAMREWNNSYHRETVTLSDLEFLDIVLRIKGFGSLWRNWINGCLSSANYSIILNGRPRGKIIPTRRIRQGDPLSPFLFIIVANCLSRLLAHSSSLGLTIARPIGQSSFSINHIQFADDTLLFNLFDVIHIFECASGLKINLAKSELLGIHISDIEIDKWLNTFGCKRGFWPSSYLGLPLGGNSSSVAFWQPVVKRFQHKLHNWKYAYITKGGRHTLIQATLSSLPTYYLSLFRAPSSVISCLDKLTRDFFWEGTRGDGGMHNVNWAILQRPQLYQVAWGLVTINVVILLFLQNGRGVSLLNWIPYGDNLFQSSIHLIVFGPLRYLVGHLKHLGDPFAIIWIWLWIGSPVALEMVFLHLFGMILGSDVVY Homology
BLAST of ClCG10G017877 vs. NCBI nr
Match: RVW33074.1 (putative ribonuclease H protein [Vitis vinifera]) HSP 1 Score: 269.2 bits (687), Expect = 8.1e-68 Identity = 195/674 (28.93%), Postives = 288/674 (42.73%), Query Frame = 0
BLAST of ClCG10G017877 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]) HSP 1 Score: 256.1 bits (653), Expect = 7.1e-64 Identity = 122/256 (47.66%), Postives = 167/256 (65.23%), Query Frame = 0
BLAST of ClCG10G017877 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis]) HSP 1 Score: 249.2 bits (635), Expect = 8.6e-62 Identity = 117/256 (45.70%), Postives = 164/256 (64.06%), Query Frame = 0
BLAST of ClCG10G017877 vs. NCBI nr
Match: VVA21938.1 (Hypothetical predicted protein, partial [Prunus dulcis]) HSP 1 Score: 249.2 bits (635), Expect = 8.6e-62 Identity = 117/256 (45.70%), Postives = 164/256 (64.06%), Query Frame = 0
BLAST of ClCG10G017877 vs. NCBI nr
Match: VVA13439.1 (Hypothetical predicted protein, partial [Prunus dulcis]) HSP 1 Score: 249.2 bits (635), Expect = 8.6e-62 Identity = 117/256 (45.70%), Postives = 164/256 (64.06%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 4.0e-09 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 9.7e-08 Identity = 58/244 (23.77%), Postives = 101/244 (41.39%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 3.7e-07 Identity = 25/81 (30.86%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy Swiss-Prot
Match: Q03274 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 5.0e-04 Identity = 41/124 (33.06%), Postives = 59/124 (47.58%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy TrEMBL
Match: A0A438DC91 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_96 PE=4 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 3.9e-68 Identity = 195/674 (28.93%), Postives = 288/674 (42.73%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 6.2e-66 Identity = 123/260 (47.31%), Postives = 169/260 (65.00%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 2.0e-64 Identity = 124/262 (47.33%), Postives = 170/262 (64.89%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 8.3e-02 Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 0
HSP 2 Score: 256.1 bits (653), Expect = 3.4e-64 Identity = 119/262 (45.42%), Postives = 172/262 (65.65%), Query Frame = 0
BLAST of ClCG10G017877 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 3.2e-62 Identity = 117/256 (45.70%), Postives = 167/256 (65.23%), Query Frame = 0
BLAST of ClCG10G017877 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 64.7 bits (156), Expect = 2.8e-10 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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