ClCG10G016130 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G016130
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 30710774 .. 30710974 (-)
RNA-Seq Expression	ClCG10G016130
Synteny	ClCG10G016130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGGGACAATACCAGTAACAACAGGAGAGTAGAAAATCAGCGCAAACCCGTCAGGAGAGAGGCTGGGGCGGCACGAGCGGAGGAAAGACGACGGCGGCGGCAATACTGAACGGGAGAGAGGCGGCGGCGACACTAAGCTGCTGAAAAGGAGGAGGAGACGGAGTGAATGTGAAGAAAAAGAAGGTGTTGTGTAG

mRNA sequence

ATGGAGATTGGGACAATACCAAAAATCAGCGCAAACCCGTCAGGAGAGAGGCTGGGGCGGCACGAGCGGAGGAAAGACGACGGCGGCGGCAATACTGAACGGGAGAGAGGCGGCGGCGACACTAAGCTGCTGAAAAGGAGGAGGAGACGGAGTGAATGTGAAGAAAAAGAAGGTGTTGTGTAG

Coding sequence (CDS)

ATGGAGATTGGGACAATACCAAAAATCAGCGCAAACCCGTCAGGAGAGAGGCTGGGGCGGCACGAGCGGAGGAAAGACGACGGCGGCGGCAATACTGAACGGGAGAGAGGCGGCGGCGACACTAAGCTGCTGAAAAGGAGGAGGAGACGGAGTGAATGTGAAGAAAAAGAAGGTGTTGTGTAG

Protein sequence

MEIGTIPKISANPSGERLGRHERRKDDGGGNTERERGGGDTKLLKRRRRRSECEEKEGVV

Homology

[Close]

BLAST of ClCG10G016130 vs. NCBI nr
Match: KGN59455.1 (hypothetical protein Csa_001719 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 13 PSGERLGRHERRKD---DGGGNTERERGGGDTKLLKRRRRRSECEEKEGVV 61
          P+GERLGRHE+RKD   +GG +TERERGGGD +LLK R+RRSE EE+ GVV
Sbjct: 40 PAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVV 90

[Close]

BLAST of ClCG10G016130 vs. ExPASy TrEMBL
Match: A0A0A0LBR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821580 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 13 PSGERLGRHERRKD---DGGGNTERERGGGDTKLLKRRRRRSECEEKEGVV 61
          P+GERLGRHE+RKD   +GG +TERERGGGD +LLK R+RRSE EE+ GVV
Sbjct: 40 PAGERLGRHEQRKDGDGNGGSSTERERGGGDNELLKERKRRSEEEEEGGVV 90

The following BLAST results are available for this feature:

BLAST of ClCG10G016130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59455.1	3.1e-07	70.59	hypothetical protein Csa_001719 [Cucumis sativus]	[more]

BLAST of ClCG10G016130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G016130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBR5	1.5e-07	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821580 PE=4 SV=1	[more]

BLAST of ClCG10G016130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G016130.1	ClCG10G016130.1	mRNA