ClCG10G015700 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G015700
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	tRNA_int_end_N2 domain-containing protein
Location	CG_Chr10: 30237608 .. 30239919 (+)
RNA-Seq Expression	ClCG10G015700
Synteny	ClCG10G015700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGTTGAGAACTCAAAGAATTTACACTGCTCCGAATCCTTCAATGGTATTACCCGACTGCTTATTTTTAAGTGTTTGTTTCAATATTTTATCTGTCTCTCTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAATTATGATTTTATTATGGTTTTTTTATCCCTATTGTTTTTCATATTGGCCACTTCTCTTTCACATTGTCTTAACTTAATTTGATCACTTTAAAGTAGTAGGGTAATCTCATGAAAAAGAAAAGAAGTTGGAAGTGTTTCCAAGCCAAGGCCAGGAAATGGCCTATGAGAGCCGCATTAGGTGCTTCTTGGCAATTACCTTGGTCGCCTCTTGGTCAGTTTTTTATTGCTTTTTGGTTGTCTTTGGGGCTGTATTTTGAACGTTACATTTTGAATAAAGGGAAGGAATTCAAACTTAAAATATATAAGAAGAAATACTAGTAGCCTTTTGTGTCTTAGTAAAAGTAGGAAGTCATCATTTTTTAAATTCATTTTTAACTGTAGTTTTCTTCCTATCATTATCTTTTGGAAATAAGTAAGCTTGCTTGTGTCCAACTGTATAATTCATTTTATGTATCACTTATTCTTCTTTACTATTTCCAATATATTCTAGTCTATTTACAATAAATATGCACATCTATTGTTTTGCATTCTCTTGGGCAATGTTTTTTTTAAATATTTTTTTTGTGTCTCTTTTCTTAGGAAAGTTAGAGGCGTGTTGCCTTAAAGTGTGTCTTGTACTTTGTAAATGTTGATTGTAATATGAACTTTGGCTCTAAAGTAGAGTTGTACTAATTAAAGCAGAAAAATATTCTCTTTTTAATTTTTTAATTTTATAAATAGAGATATTAAGGTTCATAATCTCTTTTGAGACATTCGGATGATAATATTTATGTACACTATCAAATTTTCTTTTCTATATTTTCAGATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTTATAATAAAATCCATGCAACTTCCTTCCTAGTCTGTGCCTGGCTAGGGTTTTTTATTTTCAGTTTTATTTTTAACTACTTGGAAAGGCATAATTTGCACCTCACCTGACTTTTTAATAGTTTTCTTAATCTAAACAAGTTCAGTATTCTCAACACCAGCCCCAACTAGAGGACACGTGTTGACTGATCCTAAGATCGTGTGCACTATTTCTAGTGTTCAAAATTTTGTAAACTACACTTAGCGTGCCTTTTGGAAAAGGTGTTTTTCAAGCGAGCACATATGATGGAAGCAGTTTTGGAAGAAAATTAGTTAAATGGTTCCTCTGTAAGCACTCTATGTACTTTTTAGTCAAATGCTTTTAGTTGGTCGAAAACACTTTTTACCATAACATTGTAATCCAAATCCTGCCCATCTCTAAATAAATACTTTCAGTCATCCACAAGGACTTTAAAGGCATGTTAAACACACTTGGATTAGTACTCAATTCTATGGTTGTGAATTGTTTGCCCAATGTATCAATTTCATTTTTAGCCATTCTTGTAGTAATAGGCTTCAACGTCTATCGTTTCTTTCTTCTGGAAAATTTTATACACTACTTTTGAATTTATCTTATCTTTTAATTCCTGTGATGTAAATTGTTTCTTTTATAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGA

mRNA sequence

ATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGA

Coding sequence (CDS)

ATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGA

Protein sequence

MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIPMKY

Homology

[Close]

BLAST of ClCG10G015700 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 217/243 (89.30%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEA  WESSSGGASGD+DNY +DI +EEECLCASGYLRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEAVDWESSSGGASGDEDNYEEDINNEEECLCASGYLRKLQFRKHASTARWNDRMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSL+DVYKK+AEGKNG
Sbjct: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLEDVYKKIAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWSLKSVR+GS+ISSPSSIENKGASD KSEDERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSLKSVRDGSNISSPSSIENKGASDVKSEDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELLD IQL EV PIF VFLPHNKFRKSS GDPNFMV LTR YPPSKKD+EVL RTSRGIP
Sbjct: 181 ELLDGIQLEEVMPIFDVFLPHNKFRKSSPGDPNFMVYLTRGYPPSKKDLEVLARTSRGIP 240

Query: 241 MKY 244
           MKY
Sbjct: 241 MKY 243

[Close]

BLAST of ClCG10G015700 vs. NCBI nr
Match: XP_011653726.1 (uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus] >KGN54460.1 hypothetical protein Csa_012673 [Cucumis sativus])

HSP 1 Score: 428.7 bits (1101), Expect = 3.3e-116
Identity = 214/245 (87.35%), Postives = 226/245 (92.24%), Query Frame = 0


Query: 1   MEATVWESSSGGAS--GDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT WESSSGGAS  GD+DNY QDI DEEECL ASG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 NGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERS 180
           +G LWEQFEVYRHLKSLG+ VGKH+VPWSLK+VRN  DISSPSS ENKGASD KS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 IFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRG 240
           I  LL+AIQL+EVTPIF VFLPHNKFRKSS GDPNFMVCLTR YPPSK++IEVLERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKY 244
           IPMKY
Sbjct: 241 IPMKY 245

[Close]

BLAST of ClCG10G015700 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 419.1 bits (1076), Expect = 2.6e-113
Identity = 206/243 (84.77%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WESSSGGASGDD+ Y QD++DEEECLCASG +RKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LEN+GSLWTT GIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWS+K VRNGSDIS  SSIEN+GA D +S+DERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL +IQL++V PIF VFLPH+KFRKSS GDPNFMVCLTR YPP KKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 241 MKY 244
           +KY
Sbjct: 241 IKY 243

[Close]

BLAST of ClCG10G015700 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.3 bits (1074), Expect = 4.5e-113
Identity = 204/243 (83.95%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKY 244
           MKY
Sbjct: 241 MKY 243

[Close]

BLAST of ClCG10G015700 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418.3 bits (1074), Expect = 4.5e-113
Identity = 204/243 (83.95%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 272 MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 331

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 332 LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 391

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D  SEDE+SI 
Sbjct: 392 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 451

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 452 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 511

Query: 241 MKY 244
           MKY
Sbjct: 512 MKY 514

[Close]

BLAST of ClCG10G015700 vs. ExPASy Swiss-Prot
Match: O74908 (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen54 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-06
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 37  LRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTIGIVRC-GKIYCSIEETLFLIEVGAL 96
           + +L   KHA  A WN Q GM+ V +  G L+ T+G      +++   EETL+L+E G++
Sbjct: 74  VERLISAKHAIIATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSM 133

Query: 97  HLLDHDNSSLSLKDVYKKVAEGKNGYLWEQFEVYRHLKSLGFTV 140
                +   +SL+ VY   +    G L E + VY HL+  GF+V
Sbjct: 134 ECWSEEGLPMSLQAVY-SASIPLCGSL-ENYLVYAHLRRCGFSV 175

[Close]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL
Match: A0A0A0KXV5 (tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.6e-116
Identity = 214/245 (87.35%), Postives = 226/245 (92.24%), Query Frame = 0


Query: 1   MEATVWESSSGGAS--GDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT WESSSGGAS  GD+DNY QDI DEEECL ASG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 NGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERS 180
           +G LWEQFEVYRHLKSLG+ VGKH+VPWSLK+VRN  DISSPSS ENKGASD KS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 IFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRG 240
           I  LL+AIQL+EVTPIF VFLPHNKFRKSS GDPNFMVCLTR YPPSK++IEVLERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKY 244
           IPMKY
Sbjct: 241 IPMKY 245

[Close]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 206/243 (84.77%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WESSSGGASGDD+ Y QD++DEEECLCASG +RKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LEN+GSLWTT GIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWS+K VRNGSDIS  SSIEN+GA D +S+DERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL +IQL++V PIF VFLPH+KFRKSS GDPNFMVCLTR YPP KKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 241 MKY 244
           +KY
Sbjct: 241 IKY 243

[Close]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.8e-113
Identity = 203/243 (83.54%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  +NG DISS SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKY 244
           MKY
Sbjct: 241 MKY 243

[Close]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL
Match: A0A1S4E447 (uncharacterized protein LOC103501474 OS=Cucumis melo OX=3656 GN=LOC103501474 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.4e-112
Identity = 206/245 (84.08%), Postives = 221/245 (90.20%), Query Frame = 0


Query: 1   MEATVWESSSGGAS--GDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT W+SSSGGAS  GD+DNY QDI DEEECL AS  LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT GIVRCGKIYC+IEETLFLIEVGALHLLDHDNS+LSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCTIEETLFLIEVGALHLLDHDNSTLSLKDVYKKVAEGR 120

Query: 121 NGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERS 180
           +G +WEQFEVYRHLKSLG+ VGKHKVPWSLK+VRN  D+SSPSS E KG SD KSEDE+ 
Sbjct: 121 SGCIWEQFEVYRHLKSLGYIVGKHKVPWSLKNVRNDCDLSSPSSTEKKGVSDVKSEDEQL 180

Query: 181 IFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRG 240
           I  LL+AIQL+EVTPIF VFLPHNKFRKSS GDPNFMVCL R YPPSK++IEVLERTSRG
Sbjct: 181 ISGLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLARGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKY 244
           IPMKY
Sbjct: 241 IPMKY 245

[Close]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 201/243 (82.72%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECL +SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D +SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL+A+QLNE+TPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKY 244
           MKY
Sbjct: 241 MKY 243

[Close]

BLAST of ClCG10G015700 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-48
Identity = 98/235 (41.70%), Postives = 149/235 (63.40%), Query Frame = 0


Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME   WE+SS       +N      D++E   + G + KLQFR  +S ARW  ++GMAEV
Sbjct: 1   MEEKDWEASS-----SSENEGGFPNDDDEEFHSGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVAEGKN 120
              +G LWTT GI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+AE K+
Sbjct: 61  EVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKS 120

Query: 121 GYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSI 180
           G  WE +EVYR+LK LG+ +G+H V W+LK      D + P+  E    + +   D  ++
Sbjct: 121 GCSWENYEVYRYLKGLGYILGRHGVSWTLK------DAARPNGEEESACAGECPADNDTV 180

Query: 181 FELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLER 235
            +LL  +Q+ +   +F V+LP+++F+KSS G+P+F+ C +   PPSK+DI+VL++
Sbjct: 181 TKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQK 224

[Close]

BLAST of ClCG10G015700 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 79/175 (45.14%), Postives = 118/175 (67.43%), Query Frame = 0


Query: 57  MAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSED 176
           EGK G  WE +EVYR+LK LG+ +G+H VPW+ K   N    ++PS  +    + +  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN----TTPSDEDESLCAAEFFQD 120

Query: 177 ERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIE 231
             S+ +LL  + + +  P+F V+LP+++F+KSS G+P+F+ C +   PPSK++I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]

BLAST of ClCG10G015700 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 7.3e-37
Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 57  MAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSED 176
           EGK G  WE +EVYR+LK LG+ +G+H VPW+ K   N    ++PS  +    + +  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN----TTPSDEDESLCAAEFFQD 120

Query: 177 ERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLT 220
             S+ +LL  + + +  P+F V+LP+++F+KSS G+P+F+ C +
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFS 160

The following BLAST results are available for this feature:

BLAST of ClCG10G015700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883355.1	1.4e-119	89.30	uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 unchara...	[more]
XP_011653726.1	3.3e-116	87.35	uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus] >KGN54460.1 hy...	[more]
XP_022156818.1	2.6e-113	84.77	uncharacterized protein LOC111023660 [Momordica charantia]	[more]
KAG7028441.1	4.5e-113	83.95	tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6596967.1	4.5e-113	83.95	Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of ClCG10G015700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74908	3.8e-06	34.62	Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (...	[more]

BLAST of ClCG10G015700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV5	1.6e-116	87.35	tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G33...	[more]
A0A6J1DRN3	1.3e-113	84.77	uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1FKK4	4.8e-113	83.54	tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S4E447	5.4e-112	84.08	uncharacterized protein LOC103501474 OS=Cucumis melo OX=3656 GN=LOC103501474 PE=...	[more]
A0A6J1I8D9	2.0e-111	82.72	tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of ClCG10G015700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57360.1	3.2e-48	41.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.2	1.2e-39	45.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02370.1	7.3e-37	45.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024336	tRNA-splicing endonuclease, subunit Sen54, N-terminal	PFAM	PF12928	tRNA_int_end_N2	coord: 41..97 e-value: 5.6E-10 score: 39.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..172
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 1..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G015700.1	ClCG10G015700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0000379	tRNA-type intron splice site recognition and cleavage
cellular_component	GO:0000214	tRNA-intron endonuclease complex
molecular_function	GO:0004519	endonuclease activity