ClCG10G011995 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCAATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCAATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA ATGTCTTCTCTCGAAACCGCTTCTACCTTCCGCTTCAGTCTCCGCCGCCACGACGCCACCGACGATCAATCTCTCCTAATCCGATTGGGGTTTTCGCAACGTAAGCTCTCCCGATCGCCGTCCGCCGGACTTCCCTACCAAATCCTCCATGAATCTCCCACGATTCCAATGCGAATCACTATATTCCCTCTCCCGTTGCGAGAACTCGAACATCCGTTGCTCTGTCATGCTTACGTCGTTCAATTGCTCTCTTACTTGGACCTCACCGCCGGAACCTGCGATATAATCGCTAAGGATATCACGTCTCTCGTTGGTGAGTTGTTGGCCGCCGGAAACTTCGAGGTTAAGTTCCGCATCGTGGCGTTAATCTATCATATCCAATTGTCCTGGGGTGACCAGATAGGTGAAAGCAGGCAAAGTGTTGCGGCGGAGCAGACGGTGATTTTGGAAGAAGCTCCGGCGAGGAAGACGGCGGCGGAGAAGGCGATTGAGAGGTTGAAGAGGGAGAAATTCGATGGGTTTGTGGGAGAAGAATTGGGAGATTGCTGTGTTTGTTACGAAGAATTGAAGGAAGGGGGGAAGGAGGTGAGTAGAATCGGGTGCGGTCATGTCTATCATAAGTCCTGTATTCTCACTTGGGTTCAAAGAAGTGATTCTTGTCCTTTGTGCAGAATGAAAATAGAATAA MSSLETASTFRFSLRRHDATDDQSLLIRLGFSQRKLSRSPSAGLPYQILHESPTIPMRITIFPLPLRELEHPLLCHAYVVQLLSYLDLTAGTCDIIAKDITSLVGELLAAGNFEVKFRIVALIYHIQLSWGDQIGESRQSVAAEQTVILEEAPARKTAAEKAIERLKREKFDGFVGEELGDCCVCYEELKEGGKEVSRIGCGHVYHKSCILTWVQRSDSCPLCRMKIE Homology
BLAST of ClCG10G011995 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]) HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96 Identity = 181/228 (79.39%), Postives = 200/228 (87.72%), Query Frame = 0
BLAST of ClCG10G011995 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida]) HSP 1 Score: 269.6 bits (688), Expect = 2.4e-68 Identity = 139/233 (59.66%), Postives = 172/233 (73.82%), Query Frame = 0
BLAST of ClCG10G011995 vs. NCBI nr
Match: KAA0052771.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 250.0 bits (637), Expect = 2.0e-62 Identity = 130/228 (57.02%), Postives = 165/228 (72.37%), Query Frame = 0
BLAST of ClCG10G011995 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 220.7 bits (561), Expect = 1.3e-53 Identity = 118/228 (51.75%), Postives = 155/228 (67.98%), Query Frame = 0
BLAST of ClCG10G011995 vs. NCBI nr
Match: KAE8650076.1 (hypothetical protein Csa_011336 [Cucumis sativus]) HSP 1 Score: 216.5 bits (550), Expect = 2.4e-52 Identity = 126/236 (53.39%), Postives = 157/236 (66.53%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07 Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07 Identity = 18/47 (38.30%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07 Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07 Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy Swiss-Prot
Match: Q5M974 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07 Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 9.6e-63 Identity = 130/228 (57.02%), Postives = 165/228 (72.37%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49 Identity = 110/222 (49.55%), Postives = 151/222 (68.02%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48 Identity = 112/222 (50.45%), Postives = 152/222 (68.47%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 9.7e-47 Identity = 113/225 (50.22%), Postives = 149/225 (66.22%), Query Frame = 0
BLAST of ClCG10G011995 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45 Identity = 112/222 (50.45%), Postives = 145/222 (65.32%), Query Frame = 0
BLAST of ClCG10G011995 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 9.3e-10 Identity = 40/139 (28.78%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of ClCG10G011995 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 9.3e-10 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of ClCG10G011995 vs. TAIR 10
Match: AT5G67120.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 2.7e-09 Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 0
BLAST of ClCG10G011995 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08 Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 0
BLAST of ClCG10G011995 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08 Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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