ClCG10G011710 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G011710
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 25549862 .. 25550248 (-)
RNA-Seq ExpressionClCG10G011710
SyntenyClCG10G011710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGGAGAATGAGGAGGAGGAAGCAGACATCGAGAAATTCAGCGAGATCGTCGAGAAATTTCGCGCTCCTTACAATTGGTTTAGGGCTAAAATCTCCAGTAATTCCGCCGCTGCAACTAATAATGGCGACGATCGGAAGAAGAAGGTGAGGATTATCGTTGAAGACGATTCGCGGAATTCAGGCGGCGACGATGATGTTTGGATGCCCTGTTTTCTTCTGCAAGATTTCGAGGAAGAGGAAGTCATCAAGTCCTGGAAAGCCAGAGCGGTGCAGAGCTCAGAGACGGCGGCTCCGGCGGCGGAATTTGAAACCATCGACGGCGGAGGGGAAGAGAAGAAGAACAGTGATAATAACGAAGAGTTAAACCTCCGTCTCTCTCTTTAG

mRNA sequence

AGGAAGGAGAATGAGGAGGAGGAAGCAGACATCGAGAAATTCAGCGAGATCGTCGAGAAATTTCGCGCTCCTTACAATTGGTTTAGGGCTAAAATCTCCAGTAATTCCGCCGCTGCAACTAATAATGGCGACGATCGGAAGAAGAAGGTGAGGATTATCGTTGAAGACGATTCGCGGAATTCAGGCGGCGACGATGATGTTTGGATGCCCTGTTTTCTTCTGCAAGATTTCGAGGAAGAGGAAGTCATCAAGTCCTGGAAAGCCAGAGCGGTGCAGAGCTCAGAGACGGCGGCTCCGGCGGCGGAATTTGAAACCATCGACGGCGGAGGGGAAGAGAAGAAGAACAGTGATAATAACGAAGAGTTAAACCTCCGTCTCTCTCTTTAG

Coding sequence (CDS)

AGGAAGGAGAATGAGGAGGAGGAAGCAGACATCGAGAAATTCAGCGAGATCGTCGAGAAATTTCGCGCTCCTTACAATTGGTTTAGGGCTAAAATCTCCAGTAATTCCGCCGCTGCAACTAATAATGGCGACGATCGGAAGAAGAAGGTGAGGATTATCGTTGAAGACGATTCGCGGAATTCAGGCGGCGACGATGATGTTTGGATGCCCTGTTTTCTTCTGCAAGATTTCGAGGAAGAGGAAGTCATCAAGTCCTGGAAAGCCAGAGCGGTGCAGAGCTCAGAGACGGCGGCTCCGGCGGCGGAATTTGAAACCATCGACGGCGGAGGGGAAGAGAAGAAGAACAGTGATAATAACGAAGAGTTAAACCTCCGTCTCTCTCTTTAG

Protein sequence

RKENEEEEADIEKFSEIVEKFRAPYNWFRAKISSNSAAATNNGDDRKKKVRIIVEDDSRNSGGDDDVWMPCFLLQDFEEEEVIKSWKARAVQSSETAAPAAEFETIDGGGEEKKNSDNNEELNLRLSL
Homology
BLAST of ClCG10G011710 vs. NCBI nr
Match: KGN58537.1 (hypothetical protein Csa_002705 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-36
Identity = 84/125 (67.20%), Postives = 97/125 (77.60%), Query Frame = 0

Query: 4   NEEEEADIEKFSEIVEKFRAPYNWFRAKISSNSAAATNNGDDRKKKVRIIVEDDSRNSGG 63
           N+ EE +I+KFSEIVEKFRAPYNWFRA++S++SAAAT+NG DRKKK +            
Sbjct: 13  NQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHSAAATHNGGDRKKKKKKPSGSGEDEDDD 72

Query: 64  DDDVWMPCFLLQDFEEEEVIKSWKARAVQSSETAAPAAEFETIDGGGEEKKNSDNNEELN 123
           DDDVWMPCFLLQDFEEEEVIKSWKARAV   ETA PAAEFE++DGG  E +     E+LN
Sbjct: 73  DDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAEFESVDGGRVEGEKGKKEEKLN 132

Query: 124 LRLSL 129
           LRLSL
Sbjct: 133 LRLSL 137

BLAST of ClCG10G011710 vs. NCBI nr
Match: KAG6606917.1 (hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 4   NEEEEADIEKFSEIVEKFRAPYNWFRAKISSNSAAATNNGDD---RKKKVRIIVEDDSRN 63
           NE +EAD+EKF EIVEKFRAPY+WFRAK+S + A    NG+D   +KKK + IVEDDS+ 
Sbjct: 17  NESDEADVEKFMEIVEKFRAPYDWFRAKMSGSVA----NGEDQRMKKKKKKKIVEDDSKR 76

Query: 64  SGGDDDVWMPCFLLQDFEEEEVIKSWKARAVQSSETAAPAAEFETIDGGGEEKKNSDNNE 123
                DVWMP FLL+DFEEEEVIK WK+ A++ SET A A    T+DGG EEK   +NNE
Sbjct: 77  G----DVWMPFFLLEDFEEEEVIKFWKSTALRKSETTATATAATTMDGGSEEK---ENNE 133

Query: 124 ELNLRLSL 129
            L+LRL L
Sbjct: 137 GLDLRLCL 133

BLAST of ClCG10G011710 vs. NCBI nr
Match: KAG6581317.1 (hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = 0

Query: 1   RKEN---EEEEADIEKFSEIVEKFRAPYNWFRAKISSNSAAATNNGDDRKKKVRIIVEDD 60
           RKE+   + ++ +IEKFSEIV+ FRAPYNWFRAKI+   + +  NG D  K  +I+  D 
Sbjct: 9   RKESDRIDSDDTEIEKFSEIVDNFRAPYNWFRAKIT--GSGSLTNGHDLNKNHKIVHRDS 68

Query: 61  SRNSGGDDDVWMPCFLLQDFEEEEVIKSWKARAVQSSETAAP-----AAEFETIDGGGEE 120
           +R   G D VWMPCFL++DFEE+EVIKSWKARA+  S+TA P     AA FE ID GGEE
Sbjct: 69  NR---GVDGVWMPCFLVEDFEEQEVIKSWKARALPKSQTADPAAAAAAAAFEAID-GGEE 128

Query: 121 KKNSDNNEELNLRLSL 129
            K  D+++EL+LRLSL
Sbjct: 129 AKKKDDHKELDLRLSL 138

BLAST of ClCG10G011710 vs. ExPASy TrEMBL
Match: A0A0A0LCY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 84/125 (67.20%), Postives = 97/125 (77.60%), Query Frame = 0

Query: 4   NEEEEADIEKFSEIVEKFRAPYNWFRAKISSNSAAATNNGDDRKKKVRIIVEDDSRNSGG 63
           N+ EE +I+KFSEIVEKFRAPYNWFRA++S++SAAAT+NG DRKKK +            
Sbjct: 13  NQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHSAAATHNGGDRKKKKKKPSGSGEDEDDD 72

Query: 64  DDDVWMPCFLLQDFEEEEVIKSWKARAVQSSETAAPAAEFETIDGGGEEKKNSDNNEELN 123
           DDDVWMPCFLLQDFEEEEVIKSWKARAV   ETA PAAEFE++DGG  E +     E+LN
Sbjct: 73  DDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAEFESVDGGRVEGEKGKKEEKLN 132

Query: 124 LRLSL 129
           LRLSL
Sbjct: 133 LRLSL 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN58537.12.3e-3667.20hypothetical protein Csa_002705 [Cucumis sativus][more]
KAG6606917.12.0e-2760.16hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6581317.12.2e-2655.88hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCY61.1e-3667.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G011710.1ClCG10G011710.1mRNA