ClCG10G010300 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G010300
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 23006561 .. 23006857 (-)
RNA-Seq ExpressionClCG10G010300
SyntenyClCG10G010300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAGCAAGAAGCTGGTCGTGTTAGTAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

mRNA sequence

ATGGAGATGAGCAAGAAGCTGGTCGTGTTAGTAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

Coding sequence (CDS)

ATGGAGATGAGCAAGAAGCTGGTCGTGTTAGTAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

Protein sequence

MEMSKKLVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKNRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL
Homology
[Close]
BLAST of ClCG10G010300 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_014977 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-24
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0 

Query: 3  MSKK-LVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKN- 62
          MSKK LVVL M  VLLV +SV  T+  TI EA EV+SDEVN+    EM+  PRK+ L+N 
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKA-GLEMIFAPRKLKLRNG 60

Query: 63 --RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
            R+GVCL VGKPC SDADCPSGCYCKP+PL++ GYCGFL
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]
BLAST of ClCG10G010300 vs. NCBI nr
Match: KAA0044331.1 (hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 12 MAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN---RVGVCLF 71
          MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN   R+GVCL 
Sbjct: 1  MAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKNGGPRLGVCLL 60

Query: 72 VGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
          VGKPC SDADCPSGCYCKP+PL+D GYCGFL
Sbjct: 61 VGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 90

[Close]
BLAST of ClCG10G010300 vs. NCBI nr
Match: TYK29460.1 (hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 3  MSKK-LVVLVMAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN 62
          MSKK LVVL MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN
Sbjct: 1  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKN 60

Query: 63 ---RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAG 94
             R+GVCL VGKPC SDADCPSGCYCKP+PL+D G
Sbjct: 61 GGPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIG 95

[Close]
BLAST of ClCG10G010300 vs. NCBI nr
Match: TYK29461.1 (hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 3   MSKKLVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+ +L MAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGLLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]
BLAST of ClCG10G010300 vs. NCBI nr
Match: KAA0044332.1 (hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-08
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 0 

Query: 3   MSKKLVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+  L MAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGFLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match: A0A0A0KY29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0 

Query: 3  MSKK-LVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKN- 62
          MSKK LVVL M  VLLV +SV  T+  TI EA EV+SDEVN+    EM+  PRK+ L+N 
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKA-GLEMIFAPRKLKLRNG 60

Query: 63 --RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
            R+GVCL VGKPC SDADCPSGCYCKP+PL++ GYCGFL
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match: A0A5A7TRX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00540 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.0e-22
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 12 MAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN---RVGVCLF 71
          MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN   R+GVCL 
Sbjct: 1  MAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKNGGPRLGVCLL 60

Query: 72 VGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
          VGKPC SDADCPSGCYCKP+PL+D GYCGFL
Sbjct: 61 VGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 90

[Close]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match: A0A5D3E1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00540 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 3  MSKK-LVVLVMAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN 62
          MSKK LVVL MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN
Sbjct: 1  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKN 60

Query: 63 ---RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAG 94
             R+GVCL VGKPC SDADCPSGCYCKP+PL+D G
Sbjct: 61 GGPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIG 95

[Close]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match: A0A5D3E1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00550 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-08
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 3   MSKKLVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+ +L MAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGLLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match: A0A5A7TM06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00550 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 0 

Query: 3   MSKKLVVLVMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+  L MAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGFLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

The following BLAST results are available for this feature:
BLAST of ClCG10G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52756.14.6e-2465.00hypothetical protein Csa_014977 [Cucumis sativus][more]
KAA0044331.11.2e-2164.84hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa][more]
TYK29460.14.0e-2064.58hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa][more]
TYK29461.12.1e-0841.84hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa][more]
KAA0044332.13.5e-0841.84hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa][more]
BLAST of ClCG10G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY292.2e-2465.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1[more]
A0A5A7TRX66.0e-2264.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E1P71.9e-2064.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E1J31.0e-0841.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TM061.7e-0841.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of ClCG10G010300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G010300.1ClCG10G010300.1mRNA