ClCG10G008230 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G008230
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr10: 15497207 .. 15497419 (-)
RNA-Seq ExpressionClCG10G008230
SyntenyClCG10G008230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGACTCTTTGCTTGCCCGACCGCTGCTTATGTACTCCGGAGCCATGTACCCAAATGTTCCGACCAACCCGGGTCTTTTTGAGTTGAGTTCATGCTTCATGAGCCTCGCTAATCCGAAGTCGCCCAGCTTTGCAGTAAAATCGGAATCAAGTAGCACATTGCTTGATTTGATATCTCGGTGGATGACGCTATGCTCTCGTTCTTCGTGA

mRNA sequence

ATGTCTGACTCTTTGCTTGCCCGACCGCTGCTTATGTACTCCGGAGCCATGTACCCAAATGTTCCGACCAACCCGGGTCTTTTTGAGTTGAGTTCATGCTTCATGAGCCTCGCTAATCCGAAGTCGCCCAGCTTTGCAGTAAAATCGGAATCAAGTAGCACATTGCTTGATTTGATATCTCGGTGGATGACGCTATGCTCTCGTTCTTCGTGA

Coding sequence (CDS)

ATGTCTGACTCTTTGCTTGCCCGACCGCTGCTTATGTACTCCGGAGCCATGTACCCAAATGTTCCGACCAACCCGGGTCTTTTTGAGTTGAGTTCATGCTTCATGAGCCTCGCTAATCCGAAGTCGCCCAGCTTTGCAGTAAAATCGGAATCAAGTAGCACATTGCTTGATTTGATATCTCGGTGGATGACGCTATGCTCTCGTTCTTCGTGA

Protein sequence

MSDSLLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISRWMTLCSRSS
Homology
BLAST of ClCG10G008230 vs. NCBI nr
Match: KAG4400825.1 (hypothetical protein GLYMA_07G135650v4 [Glycine max])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 2   SDSLLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISR 61
           S+ ++A P+L  SGA YPNVPT   +  L+ C  +LANPKSPS    S+SSSTLL   S 
Sbjct: 136 SELVVAFPVLGNSGAKYPNVPTTLVVLGLAPCSYNLANPKSPSLPFSSKSSSTLLAFTSL 195

Query: 62  WMTLCS 68
            +T CS
Sbjct: 196 CITTCS 201

BLAST of ClCG10G008230 vs. NCBI nr
Match: CAA7399540.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 36/69 (52.17%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 2  SDSLLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISR 61
          SDSLLA P++  SGA YP VP    +        SLA PKSP+ A+K  SS TLLD  S 
Sbjct: 19 SDSLLALPVVAVSGAKYPIVPATAVVSMPPPWSTSLARPKSPNLALKLTSSITLLDFTSL 78

Query: 62 WMTLCSRSS 71
          W T CS SS
Sbjct: 79 WTTHCSDSS 87

BLAST of ClCG10G008230 vs. NCBI nr
Match: AFK41482.1 (unknown [Lotus japonicus])

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 5   LLARPLLMYSGAMYPNVPTNPGLFELSSCFM---SLANPKSPSFAVKSESSSTLLDLISR 63
           ++ARPLL YSGA YP VPT   + + S  F+   S ANPKS  FA+K  SS  LL LISR
Sbjct: 55  VVARPLLKYSGARYPYVPTTL-VVDTSPSFVFPTSFANPKSEIFALKEASSKMLLVLISR 114

BLAST of ClCG10G008230 vs. ExPASy TrEMBL
Match: A0A0V0GXT8 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 5   LLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISRWMT 64
           ++ARP+L  SGA YPNVPT   +  L  C  +LA+PKSP+    S SS+TLL LISR  T
Sbjct: 49  VVARPVLGNSGARYPNVPTTLVVDGLDPCSYNLASPKSPNLPFNSPSSNTLLALISRCTT 108

Query: 65  LCS 68
            CS
Sbjct: 109 TCS 111

BLAST of ClCG10G008230 vs. ExPASy TrEMBL
Match: A0A7I8KP06 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.7e-06
Identity = 36/69 (52.17%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 2  SDSLLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISR 61
          SDSLLA P++  SGA YP VP    +        SLA PKSP+ A+K  SS TLLD  S 
Sbjct: 19 SDSLLALPVVAVSGAKYPIVPATAVVSMPPPWSTSLARPKSPNLALKLTSSITLLDFTSL 78

Query: 62 WMTLCSRSS 71
          W T CS SS
Sbjct: 79 WTTHCSDSS 87

BLAST of ClCG10G008230 vs. ExPASy TrEMBL
Match: A0A0A9U247 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-05
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 2  SDSLLARPLLMYSGAMYPNVPTNPGLFELSSCFMSLANPKSPSFAVKSESSSTLLDLISR 61
          S + +A P+ + SGA YP+VPT   +  L+    SLA+PKSPS A  S S STLL   SR
Sbjct: 19 SAAAVAFPVRVSSGARYPSVPTTRVVLGLAPRSWSLASPKSPSRADMSASRSTLLAFTSR 78

Query: 62 WMTLCSRSS 71
          W T CS  S
Sbjct: 79 WRTTCSHPS 87

BLAST of ClCG10G008230 vs. ExPASy TrEMBL
Match: I3SMJ0 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 5   LLARPLLMYSGAMYPNVPTNPGLFELSSCFM---SLANPKSPSFAVKSESSSTLLDLISR 63
           ++ARPLL YSGA YP VPT   + + S  F+   S ANPKS  FA+K  SS  LL LISR
Sbjct: 55  VVARPLLKYSGARYPYVPTTL-VVDTSPSFVFPTSFANPKSEIFALKEASSKMLLVLISR 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG4400825.16.9e-0651.52hypothetical protein GLYMA_07G135650v4 [Glycine max][more]
CAA7399540.12.0e-0552.17unnamed protein product [Spirodela intermedia][more]
AFK41482.12.9e-0455.74unknown [Lotus japonicus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0V0GXT83.3e-0653.97Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
A0A7I8KP069.7e-0652.17Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010210 PE=4 SV... [more]
A0A0A9U2478.2e-0549.28Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
I3SMJ01.4e-0455.74Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G008230.1ClCG10G008230.1mRNA