ClCG10G007490 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G007490
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein root UVB sensitive 6
Location	CG_Chr10: 11119651 .. 11120122 (+)
RNA-Seq Expression	ClCG10G007490
Synteny	ClCG10G007490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGATCAAGCTCAAGCAATCCCCCAATTCCGCTGCCACATCTGTTGCTTCCTCCACTGAAGCGCGCATTCTCGTTCGGGAATCTCTGCGCATTACTGCTACTTTGGCTTCTGCTCCTCCTCTTGATCCTGTCCCCCCCACGCTCTCCCTCGCTGGGCCGCAGCCGAGCAACCCTGGTATTGTGGATAATCAGTTTCTTGATTCCACCTTGAGGTTCATTTGCTGCGAGGAAATCGATGGCCGCAGGTGGAATTATGTTGCTGACAATGAGCCATCCGGAAGGTCGAAGAACGGCTCGATCCGCGCTGTTTGCTTGCGTTGTAAAGGTTTTAATTTCGTTACGATCTTATTCATTTTTTTCATCGACATCTTTCCATCCATAATTGTAATTAAAATTCTTTAATTGTTTGTTAATGGGGTTTTAAATGCTATTTATTAAAATGAATGAAGATATGGTTGAGAGGTAA

mRNA sequence

ATGGCTCCGATCAAGCTCAAGCAATCCCCCAATTCCGCTGCCACATCTGTTGCTTCCTCCACTGAAGCGCGCATTCTCGTTCGGGAATCTCTGCGCATTACTGCTACTTTGGCTTCTGCTCCTCCTCTTGATCCTGTCCCCCCCACGCTCTCCCTCGCTGGGCCGCAGCCGAGCAACCCTGGTATTGTGGATAATCAGTTTCTTGATTCCACCTTGAGGTTCATTTGCTGCGAGGAAATCGATGGCCGCAGGTGGAATTATGTTGCTGACAATGAGCCATCCGGAAGGTCGAAGAACGGCTCGATCCGCGCTGTTTGCTTGCGTTGTAAAGATATGGTTGAGAGGTAA

Coding sequence (CDS)

ATGGCTCCGATCAAGCTCAAGCAATCCCCCAATTCCGCTGCCACATCTGTTGCTTCCTCCACTGAAGCGCGCATTCTCGTTCGGGAATCTCTGCGCATTACTGCTACTTTGGCTTCTGCTCCTCCTCTTGATCCTGTCCCCCCCACGCTCTCCCTCGCTGGGCCGCAGCCGAGCAACCCTGGTATTGTGGATAATCAGTTTCTTGATTCCACCTTGAGGTTCATTTGCTGCGAGGAAATCGATGGCCGCAGGTGGAATTATGTTGCTGACAATGAGCCATCCGGAAGGTCGAAGAACGGCTCGATCCGCGCTGTTTGCTTGCGTTGTAAAGATATGGTTGAGAGGTAA

Protein sequence

MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNPGIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLRCKDMVER

Homology

[Close]

BLAST of ClCG10G007490 vs. NCBI nr
Match: XP_038905746.1 (protein root UVB sensitive 6 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A+LAS PP+D VPPTLSLAGPQ  N 
Sbjct: 1   MAPIKLKQSPNSAAKSVASSTEARILVRETLRISASLASVPPVDSVPPTLSLAGPQARNL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQFLDS+LR ICCEEIDGRRWNYVADNEPSGRSKN SIRAVCL+
Sbjct: 61  GIVENQFLDSSLRLICCEEIDGRRWNYVADNEPSGRSKNASIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. NCBI nr
Match: XP_022942405.1 (protein root UVB sensitive 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVENQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. NCBI nr
Match: KAG6600704.1 (Protein root UVB sensitive 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVENQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. NCBI nr
Match: KAG7031340.1 (Protein root UVB sensitive 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVENQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. NCBI nr
Match: XP_023514744.1 (protein root UVB sensitive 6-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVENQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. ExPASy Swiss-Prot
Match: Q93YU2 (Protein root UVB sensitive 6 OS=Arabidopsis thaliana OX=3702 GN=RUS6 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-16
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 6   LKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNPGIVDN 65
           +K + +S   ++AS +  R+L RE+LRI+A+LAS PP+D +P         P +P   D+
Sbjct: 4   VKLTHHSPPDTIASDS-VRLLSRETLRISASLAS-PPVDDLP---------PHSPPPPDS 63

Query: 66  QFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL 108
           QFL STLR ICCEEIDGRR+ YVA+++ SGR K  S+RA+ L
Sbjct: 64  QFLHSTLRLICCEEIDGRRFKYVAESDGSGRFKKNSVRAISL 94

[Close]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL
Match: A0A6J1FW90 (protein root UVB sensitive 6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447460 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV+NQF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVENQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL
Match: A0A6J1C4P7 (protein root UVB sensitive 6 OS=Momordica charantia OX=3673 GN=LOC111008348 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A+LASA P D VPP LSLAGPQ    
Sbjct: 1   MAPIKLKQSPNSAAKSVASSTEARILVRETLRISASLASA-PADSVPPALSLAGPQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV++QFLDS+LR ICCEEIDGRRWNYVADNEPSGR+KNG+IRA+CL+
Sbjct: 61  GIVEDQFLDSSLRLICCEEIDGRRWNYVADNEPSGRTKNGAIRAICLQ 107

[Close]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL
Match: A0A6J1JPB1 (protein root UVB sensitive 6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486482 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.9e-39
Identity = 88/108 (81.48%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKLKQSPNSAA SVASSTEARILVRE+LRI+A LASAPP D V PT SLA  Q    
Sbjct: 1   MAPIKLKQSPNSAANSVASSTEARILVRETLRISANLASAPPADSVSPTFSLAESQARKL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GIV++QF+DS+LR ICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL+
Sbjct: 61  GIVEDQFIDSSLRLICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLQ 108

[Close]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL
Match: A0A5A7V3S8 (Protein root UVB sensitive 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00130 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.0e-37
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKL QSPNSAA SVASSTEARILVRE+LR+TA LAS PPLDP+ PT+S A P  +N 
Sbjct: 1   MAPIKLNQSPNSAAKSVASSTEARILVRETLRVTANLAS-PPLDPLLPTISPAAPHATNL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GI++NQFLDST R ICCEEIDGRRWNYVAD +PSG+SKNGSIRA+CL+
Sbjct: 61  GILENQFLDSTSRLICCEEIDGRRWNYVADIQPSGKSKNGSIRALCLQ 107

[Close]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL
Match: A0A1S3BT93 (protein root UVB sensitive 6 OS=Cucumis melo OX=3656 GN=LOC103493294 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.0e-37
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPIKLKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNP 60
           MAPIKL QSPNSAA SVASSTEARILVRE+LR+TA LAS PPLDP+ PT+S A P  +N 
Sbjct: 1   MAPIKLNQSPNSAAKSVASSTEARILVRETLRVTANLAS-PPLDPLLPTISPAAPHATNL 60

Query: 61  GIVDNQFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCLR 109
           GI++NQFLDST R ICCEEIDGRRWNYVAD +PSG+SKNGSIRA+CL+
Sbjct: 61  GILENQFLDSTSRLICCEEIDGRRWNYVADIQPSGKSKNGSIRALCLQ 107

[Close]

BLAST of ClCG10G007490 vs. TAIR 10
Match: AT5G49820.1 (Protein of unknown function, DUF647 )

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-17
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 6   LKQSPNSAATSVASSTEARILVRESLRITATLASAPPLDPVPPTLSLAGPQPSNPGIVDN 65
           +K + +S   ++AS +  R+L RE+LRI+A+LAS PP+D +P         P +P   D+
Sbjct: 4   VKLTHHSPPDTIASDS-VRLLSRETLRISASLAS-PPVDDLP---------PHSPPPPDS 63

Query: 66  QFLDSTLRFICCEEIDGRRWNYVADNEPSGRSKNGSIRAVCL 108
           QFL STLR ICCEEIDGRR+ YVA+++ SGR K  S+RA+ L
Sbjct: 64  QFLHSTLRLICCEEIDGRRFKYVAESDGSGRFKKNSVRAISL 94

The following BLAST results are available for this feature:

BLAST of ClCG10G007490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905746.1	1.5e-42	86.11	protein root UVB sensitive 6 [Benincasa hispida]	[more]
XP_022942405.1	2.7e-39	82.41	protein root UVB sensitive 6-like isoform X1 [Cucurbita moschata]	[more]
KAG6600704.1	2.7e-39	82.41	Protein root UVB sensitive 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031340.1	2.7e-39	82.41	Protein root UVB sensitive 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023514744.1	2.7e-39	82.41	protein root UVB sensitive 6-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG10G007490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YU2	5.6e-16	49.02	Protein root UVB sensitive 6 OS=Arabidopsis thaliana OX=3702 GN=RUS6 PE=2 SV=1	[more]

BLAST of ClCG10G007490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW90	1.3e-39	82.41	protein root UVB sensitive 6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1C4P7	3.7e-39	81.48	protein root UVB sensitive 6 OS=Momordica charantia OX=3673 GN=LOC111008348 PE=3...	[more]
A0A6J1JPB1	4.9e-39	81.48	protein root UVB sensitive 6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7V3S8	6.0e-37	77.78	Protein root UVB sensitive 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BT93	6.0e-37	77.78	protein root UVB sensitive 6 OS=Cucumis melo OX=3656 GN=LOC103493294 PE=3 SV=1	[more]

BLAST of ClCG10G007490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49820.1	4.0e-17	49.02	Protein of unknown function, DUF647	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12770:SF20	PROTEIN ROOT UVB SENSITIVE 6	coord: 8..109
IPR006968	Root UVB sensitive family	PANTHER	PTHR12770	RUS1 FAMILY PROTEIN C16ORF58	coord: 8..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G007490.1	ClCG10G007490.1	mRNA