ClCG10G006640 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G006640
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	CG_Chr10: 9158065 .. 9158873 (+)
RNA-Seq Expression	ClCG10G006640
Synteny	ClCG10G006640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACGAATGGATCCAATGAACAGGAGATAACACTAACCGTGGGCTTGCGCCCTCTCTCTCCGATCTCATATACTTTGGTCTCAAGCCCAAACAATCATACTGTCTCAAACATATTGCCATCTCCTAACCAATCAGACACATTAAAAGATAGTCTTGTTAACAGAAATTATGAGAAATATGACAATATGTTAAAAATGGAGCGTAAATTCTGTAAAAGAAGCTTTCAAAAAAGAACTTATTGTTTGGCTTAGAACCACAATCTTAGATTGACTCCAGCCAACAAACATGAAGCCAGAGAAATTGAAATCAATGAGAAAGAAGCAATAAAATAGGAAAATTTAAACAACTTGCACTTGGGGTCTTTTGGTCCTACATGAAGATTTTAACTTGGAATGTACGTGGGTTAGGTTCTCCCTCCAAAAGAGCCTTAATAAAAAATTTTATTTCCAGTTATTGCCCTGACTTTGTTATTCTTACTGAAATTAAACTTCAAAATGTCTCCAAAAGAACCATCAAATCAATTTGGAGCTTAATTAGTATAAATTGGCTATTCTTAAAAGCTAACGGCAGATCTGGTGATATCATCCTTATGTGGGATGATCTTCGACATTCTGTGACAAATTACATTGAGAAAGAATATTCGATTTCAACAAATGTTATTATGTTTGATGGTTTCAGCTGGTTGATAACGAATGTTTATGGGCTTGCCAAAAGAAAAGATAGGAACAAATTCTTGACGGAGATCTCCAACCTTGACAACACTTGCTCCCCCAATTGGTTATTGGGAGGAGACTTCAATGTCATC

mRNA sequence

ATGATCACGAATGGATCCAATGAACAGGAGATAACACTAACCGTGGGCTTGCGCCCTCTCTCTCCGATCTCATATACTTTGGTCTCAAGCCCAAACAATCATACTGTCTCAAACATATTGCCATCTCCTAACCAATCAGACACATTAAAAGATAGTCTTGTTAACAGAAATTATGAGAAATATGACAATATGTTAAAAATGGAGCGTTCTCCCTCCAAAAGAGCCTTAATAAAAAATTTTATTTCCAGTTATTGCCCTGACTTTGTTATTCTTACTGAAATTAAACTTCAAAATGTCTCCAAAAGAACCATCAAATCAATTTGGAGCTTAATTAGTATAAATTGGCTATTCTTAAAAGCTAACGGCAGATCTGGTGATATCATCCTTATGTGGGATGATCTTCGACATTCTGTGACAAATTACATTGAGAAAGAATATTCGATTTCAACAAATGTTATTATGTTTGATGGTTTCAGCTGGTTGATAACGAATGTTTATGGGCTTGCCAAAAGAAAAGATAGGAACAAATTCTTGACGGAGATCTCCAACCTTGACAACACTTGCTCCCCCAATTGGTTATTGGGAGGAGACTTCAATGTCATC

Coding sequence (CDS)

ATGATCACGAATGGATCCAATGAACAGGAGATAACACTAACCGTGGGCTTGCGCCCTCTCTCTCCGATCTCATATACTTTGGTCTCAAGCCCAAACAATCATACTGTCTCAAACATATTGCCATCTCCTAACCAATCAGACACATTAAAAGATAGTCTTGTTAACAGAAATTATGAGAAATATGACAATATGTTAAAAATGGAGCGTTCTCCCTCCAAAAGAGCCTTAATAAAAAATTTTATTTCCAGTTATTGCCCTGACTTTGTTATTCTTACTGAAATTAAACTTCAAAATGTCTCCAAAAGAACCATCAAATCAATTTGGAGCTTAATTAGTATAAATTGGCTATTCTTAAAAGCTAACGGCAGATCTGGTGATATCATCCTTATGTGGGATGATCTTCGACATTCTGTGACAAATTACATTGAGAAAGAATATTCGATTTCAACAAATGTTATTATGTTTGATGGTTTCAGCTGGTTGATAACGAATGTTTATGGGCTTGCCAAAAGAAAAGATAGGAACAAATTCTTGACGGAGATCTCCAACCTTGACAACACTTGCTCCCCCAATTGGTTATTGGGAGGAGACTTCAATGTCATC

Protein sequence

MITNGSNEQEITLTVGLRPLSPISYTLVSSPNNHTVSNILPSPNQSDTLKDSLVNRNYEKYDNMLKMERSPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIILMWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCSPNWLLGGDFNVI

Homology

[Close]

BLAST of ClCG10G006640 vs. NCBI nr
Match: XP_011650214.1 (uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetical protein Csa_022537 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-34
Identity = 71/132 (53.79%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           S  KR  IK+ IS Y PDFV L+E KL NV+ + +KSIWS ISI ++F + +GRSG I+L
Sbjct: 13  STQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIFKQVSGRSGGILL 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           MWDDL+H + NY+  E++ISTN +  DG++W IT+VY L  R  R  F  E+ NL  TC 
Sbjct: 73  MWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSFWQELMNLAQTCG 132

Query: 190 PNWLLGGDFNVI 202
            NWLL GDFN I
Sbjct: 133 SNWLLAGDFNAI 144

[Close]

BLAST of ClCG10G006640 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-26
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           S SKRA IK+ I+S CPD VIL+E K  +++ + IKS+WS ISI W  L A+G SG IIL
Sbjct: 13  SASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIIL 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD L  S    I   +SIS +  + D F+W +T VY   K+K R  F  E+ +L+  C 
Sbjct: 73  LWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCG 132

Query: 190 PNWLLGGDFNV 201
           P WLLG DFN+
Sbjct: 133 PIWLLGEDFNI 143

[Close]

BLAST of ClCG10G006640 vs. NCBI nr
Match: TYJ97060.1 (hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-24
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRA IKN ISSY  D VI+TE KL   S   ++SIW+   + +  L +NG SG I++
Sbjct: 13  SPSKRAQIKNLISSYDTDLVIVTETKLHISSSFNLRSIWNKAGVKFPSLNSNGYSGGILI 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           + +D+   V +Y E+ +S+S N++  DG SW I+++YG +  KDR  F  E+  L +   
Sbjct: 73  LRNDINFKVASYKEENHSLSVNILNLDGTSWWISSIYGPSSNKDRVNFWDELKQLQSLSL 132

Query: 190 PNWLLGGDFNVI 202
           PNW+L  DFN++
Sbjct: 133 PNWMLASDFNIV 144

[Close]

BLAST of ClCG10G006640 vs. NCBI nr
Match: TYK11012.1 (uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-24
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRALIKN I SY PDFVILTE  L+  +KR IKS W   SINW+   A+G SG I++
Sbjct: 484 SPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIVKNASGSSGGILI 543

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD   HS+ +  E  +S+S N  + +  SW +T +YG  KR+ R  F  ++ NL +  S
Sbjct: 544 LWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHFWADLHNLQHLNS 603

Query: 190 PNWLLGGDFNVI 202
             W L  D NVI
Sbjct: 604 FPWSLERDLNVI 615

[Close]

BLAST of ClCG10G006640 vs. NCBI nr
Match: KAA0058980.1 (uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-24
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRALIKN I SY PDFVILTE  L+  +KR IKS W   SINW+   A+G SG I++
Sbjct: 484 SPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIVKNASGSSGGILI 543

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD   HS+ +  E  +S+S N  + +  SW +T +YG  KR+ R  F  ++ NL +  S
Sbjct: 544 LWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHFWADLHNLQHLNS 603

Query: 190 PNWLLGGDFNVI 202
             W L  D NVI
Sbjct: 604 FPWSLERDLNVI 615

[Close]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           S SKRA IK+ I+S CPD VIL+E K  +++ + IKS+WS ISI W  L A+G SG IIL
Sbjct: 13  SASKRATIKDTITSLCPDIVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIIL 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD L  S    I   +SIS +  + D F+W +T VY   K+K R  F  E+ +L+  C 
Sbjct: 73  LWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCG 132

Query: 190 PNWLLGGDFNV 201
           P WLLG DFN+
Sbjct: 133 PIWLLGEDFNI 143

[Close]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL
Match: A0A5D3BB44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001280 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRA IKN ISSY  D VI+TE KL   S   ++SIW+   + +  L +NG SG I++
Sbjct: 13  SPSKRAQIKNLISSYDTDLVIVTETKLHISSSFNLRSIWNKAGVKFPSLNSNGYSGGILI 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           + +D+   V +Y E+ +S+S N++  DG SW I+++YG +  KDR  F  E+  L +   
Sbjct: 73  LRNDINFKVASYKEENHSLSVNILNLDGTSWWISSIYGPSSNKDRVNFWDELKQLQSLSL 132

Query: 190 PNWLLGGDFNVI 202
           PNW+L  DFN++
Sbjct: 133 PNWMLASDFNIV 144

[Close]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL
Match: A0A5A7UV84 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001710 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRALIKN I SY PDFVILTE  L+  +KR IKS W   SINW+   A+G SG I++
Sbjct: 484 SPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIVKNASGSSGGILI 543

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD   HS+ +  E  +S+S N  + +  SW +T +YG  KR+ R  F  ++ NL +  S
Sbjct: 544 LWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHFWADLHNLQHLNS 603

Query: 190 PNWLLGGDFNVI 202
             W L  D NVI
Sbjct: 604 FPWSLERDLNVI 615

[Close]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL
Match: A0A5D3CI86 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00540 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           SPSKRALIKN I SY PDFVILTE  L+  +KR IKS W   SINW+   A+G SG I++
Sbjct: 484 SPSKRALIKNAIISYSPDFVILTETMLKITNKRIIKSFWPSNSINWIVKNASGSSGGILI 543

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +WD   HS+ +  E  +S+S N  + +  SW +T +YG  KR+ R  F  ++ NL +  S
Sbjct: 544 LWDAQSHSLLSQEEAIFSLSANFFLNNNSSWWLTGLYGPDKRRKRIHFWADLHNLQHLNS 603

Query: 190 PNWLLGGDFNVI 202
             W L  D NVI
Sbjct: 604 FPWSLERDLNVI 615

[Close]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL
Match: A0A6P5T1U8 (uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.8e-19
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 70  SPSKRALIKNFISSYCPDFVILTEIKLQNVSKRTIKSIWSLISINWLFLKANGRSGDIIL 129
           S  KR ++K  ++   PD VIL E K Q + +R + S+W     +W+F+ + GRSG I++
Sbjct: 13  SKRKRLVLKEQLTRLRPDIVILQETKKQEIDRRLVASVWCSRFRDWVFVPSTGRSGGIVI 72

Query: 130 MWDDLRHSVTNYIEKEYSISTNVIMFDGFSWLITNVYGLAKRKDRNKFLTEISNLDNTCS 189
           +W+    SV +    E+S+S  +    G  W ++ +YG  +++DR +F  E++ L   C 
Sbjct: 73  IWNTQFVSVIDSEIAEFSVSIKIRGTSGADWWLSGIYGPCRQRDRGRFWVELAALYGLCG 132

Query: 190 PNWLLGGDFNVI 202
            NW +GGDFNV+
Sbjct: 133 ENWCIGGDFNVV 144

The following BLAST results are available for this feature:

BLAST of ClCG10G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650214.1	5.9e-34	53.79	uncharacterized protein LOC105434766 [Cucumis sativus] >KAE8652281.1 hypothetica...	[more]
XP_022145142.1	5.9e-26	48.09	uncharacterized protein LOC111014657 [Momordica charantia]	[more]
TYJ97060.1	2.5e-24	43.18	hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa]	[more]
TYK11012.1	4.2e-24	47.73	uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]	[more]
KAA0058980.1	4.2e-24	47.73	uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG10G006640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G006640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVN2	2.8e-26	48.09	uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5D3BB44	1.2e-24	43.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UV84	2.0e-24	47.73	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CI86	2.0e-24	47.73	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6P5T1U8	5.8e-19	34.85	uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE...	[more]

BLAST of ClCG10G006640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 62..201 e-value: 2.5E-14 score: 55.6
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 71..200
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 70..200
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 70..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006640.1	ClCG10G006640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity