ClCG10G004425 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G004425
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
LocationCG_Chr10: 5643896 .. 5644411 (+)
RNA-Seq ExpressionClCG10G004425
SyntenyClCG10G004425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAGTAAGATTTTAAAAAACAAAATCTACCTTTACGTGTTAATTATGTAAATATTAATAATGTGTACGTGTGTAAATGTAGAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGTACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

mRNA sequence

ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGTACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

Coding sequence (CDS)

ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGTACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

Protein sequence

MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVEM
Homology
BLAST of ClCG10G004425 vs. NCBI nr
Match: XP_038899910.1 (uncharacterized protein LOC120087100 [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 113/146 (77.40%), Postives = 126/146 (86.30%), Query Frame = 0

Query: 1   MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQS 60
           ML Q GFGWNEEFKCVQV++EIF+   RSH +AK MWNKSFPHYDDLSTVF KDR VGQS
Sbjct: 1   MLSQSGFGWNEEFKCVQVEKEIFN---RSHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQS 60

Query: 61  SEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRAT-PAE 120
           SEDP+VMA NAF+EFEDEIRLG+Q C+T EVRQT+SPLN D +DEE  EQST RA+ P E
Sbjct: 61  SEDPYVMAKNAFREFEDEIRLGSQDCRTAEVRQTESPLNQDEIDEEPAEQSTGRASVPVE 120

Query: 121 SSRGSKRKRPSFQPEMIDIMRSTVEM 146
           +S+GSKRKRPSFQ EMIDIMRSTVEM
Sbjct: 121 TSQGSKRKRPSFQAEMIDIMRSTVEM 143

BLAST of ClCG10G004425 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-52
Identity = 106/132 (80.30%), Postives = 117/132 (88.64%), Query Frame = 0

Query: 1   MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQS 60
           ML Q GF WNEEFKCVQV+REIFDLWV SH +AKRMWNK FPHYDD STVF KDRVVG+S
Sbjct: 82  MLSQSGFDWNEEFKCVQVEREIFDLWVLSHPNAKRMWNKPFPHYDDFSTVFGKDRVVGKS 141

Query: 61  SEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRAT-PAE 120
           SEDP+VMA+NAF+EFEDEIRLG+Q CQTPEVRQT+SPLN D +DEE  EQST RA+ PA+
Sbjct: 142 SEDPYVMATNAFREFEDEIRLGSQDCQTPEVRQTESPLNQDEIDEEPAEQSTGRASVPAK 201

Query: 121 SSRGSKRKRPSF 132
           SSRGSKRKRPSF
Sbjct: 202 SSRGSKRKRPSF 213

BLAST of ClCG10G004425 vs. NCBI nr
Match: XP_038904322.1 (uncharacterized protein LOC120090676 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 6.1e-49
Identity = 103/130 (79.23%), Postives = 111/130 (85.38%), Query Frame = 0

Query: 1   MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQS 60
           ML Q GFGWNEEFKCVQV+REIFDLWVRSH +AK MWNK F HYDDLSTVF KDR VGQS
Sbjct: 1   MLSQSGFGWNEEFKCVQVEREIFDLWVRSHPNAKGMWNKPFLHYDDLSTVFGKDRAVGQS 60

Query: 61  SEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRAT-PAE 120
           SEDP VMA+NAF EFEDEIRLG+Q C TPEVRQT+SPLN D +DE   EQS SRA+ PAE
Sbjct: 61  SEDPQVMATNAFIEFEDEIRLGSQDCHTPEVRQTESPLNQDEIDEGPAEQSISRASVPAE 120

Query: 121 SSRGSKRKRP 130
           SSRGSK+KRP
Sbjct: 121 SSRGSKKKRP 130

BLAST of ClCG10G004425 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 97/144 (67.36%), Postives = 106/144 (73.61%), Query Frame = 0

Query: 1   MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQS 60
           ML Q G GWNEEFKCV V+REIFDLWV SH +AKRMWNK FPHYDDLST+F KDR VGQS
Sbjct: 128 MLSQSGLGWNEEFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDDLSTIFGKDRAVGQS 187

Query: 61  SEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRAT-PAE 120
           SE+P+VM                  C TPEVRQT+SPLN D +DEE  EQST RA+ PAE
Sbjct: 188 SENPYVMD-----------------CHTPEVRQTESPLNQDEIDEEPAEQSTGRASVPAE 247

Query: 121 SSRGSKRKRPSFQPEMIDIMRSTV 144
           SSR +KR R SFQ EMIDIMRSTV
Sbjct: 248 SSRSNKRNRSSFQVEMIDIMRSTV 254

BLAST of ClCG10G004425 vs. NCBI nr
Match: XP_038875070.1 (uncharacterized protein LOC120067596 [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 0

Query: 1   MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQS 60
           ML Q  F WNEEFKCVQV+REIF+LWV+SH + K MWNKSF HYDDLSTVF KDR VGQS
Sbjct: 82  MLSQSRFDWNEEFKCVQVEREIFNLWVQSHPNLKGMWNKSFSHYDDLSTVFRKDRAVGQS 141

Query: 61  SEDPHVMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVE 110
           SEDP+VMA+NAF+EFEDEIRLG+Q C TPEVRQT+SPLN D +DEE  E
Sbjct: 142 SEDPYVMATNAFREFEDEIRLGSQDCHTPEVRQTESPLNQDEIDEEPAE 190

BLAST of ClCG10G004425 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-19
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 0

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN++ KC++ ++E+FD WV+SH +AK + NK  PHYDDL+  F KDR  G + + P 
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 66  VMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGSK 125
            MAS+A     ++     Q    P+    ++    D ++E+     TS+ T   SS GSK
Sbjct: 64  DMASSAAATIAEDAHFEAQDFYIPDPPMFNT--TEDAIEEDLPNTPTSKPTIGTSSGGSK 123

Query: 126 RKRPSFQPEMIDIMRSTVEM 146
           RKR  +  EM+D++R+ + M
Sbjct: 124 RKRSGYTSEMVDVVRTNMRM 140

BLAST of ClCG10G004425 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 0

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWNEEF+C+  +R++FD W++SH +AK + +KSFP+YDDLS VF KDR  G  SE   
Sbjct: 91  GFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFP 150

Query: 66  VMASNAFKEFEDEIRLGTQYCQ-TPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGS 125
            + SN    F D I LG  + +  P +      ++PD M      Q++ R      S  S
Sbjct: 151 NVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASER---RNCSSVS 210

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKR S + E ++++RS +E
Sbjct: 211 KRKRGSERYETVEVIRSVME 227

BLAST of ClCG10G004425 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 0

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWNEEF+C+  +R++FD W++SH +AK + +KSFP+YDDLS VF KDR  G  SE   
Sbjct: 91  GFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFP 150

Query: 66  VMASNAFKEFEDEIRLGTQYCQ-TPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGS 125
            + SN    F D I LG  + +  P +      ++PD M      Q++ R      S  S
Sbjct: 151 NVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASER---RNCSSVS 210

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKR S + E ++++RS +E
Sbjct: 211 KRKRGSERYETVEVIRSVME 227

BLAST of ClCG10G004425 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 0

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+ V++E+FD WV+SH +AK + NKSF HYD+LS VF KDR  G  +E   
Sbjct: 90  GFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFA 149

Query: 66  VMASNAFKEFEDEIRLGTQYCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAES-SRGS 125
            + SN    ++            P +      ++PD    + +E  T+R +   + S GS
Sbjct: 150 DIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPD----DLMETRTARVSERRNVSSGS 209

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKRP    +  DI+R+ +E
Sbjct: 210 KRKRPGHATDSGDIVRTAIE 225

BLAST of ClCG10G004425 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWNEEF+C+  +R++FD WV+SH + K + +KSFP+YDDLS VF KDR  G  SE   
Sbjct: 373 GFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATGARSETFV 432

Query: 66  VMASNAFKEFEDEIRLGTQYCQ-TPEVRQTDSPLNPDGM 104
            + SN    F D I LG  + +  P +      ++PD M
Sbjct: 433 DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEM 471

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899910.16.3e-5477.40uncharacterized protein LOC120087100 [Benincasa hispida][more]
XP_038902479.12.6e-5280.30uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038904322.16.1e-4979.23uncharacterized protein LOC120090676 [Benincasa hispida][more]
XP_038892629.11.1e-4267.36uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038875070.11.0e-4076.15uncharacterized protein LOC120067596 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW737.1e-1938.57uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7U0H72.7e-1841.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L32.7e-1841.43uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3C1M02.8e-1538.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DG228.1e-1545.45Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..119
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G004425.1ClCG10G004425.1mRNA