ClCG10G004370 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G004370
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	CG_Chr10: 5554559 .. 5561041 (+)
RNA-Seq Expression	ClCG10G004370
Synteny	ClCG10G004370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGTTCTATTTCCCATACCAGCGCTTAAACCCTCCCCTCCCGCTAAAACCTCCTCAGCCGTGCTCTTGAGTGCCGCCGCCGCCTTCTTTCTCGATTTTGCTTCTCCCCCGCGCAGCTCTTCCGACTTTTGGTCTCAGGTATTCTATCTGCCGGCAACTTTGCCTTACAAAGTCTTGTCTTGGAGCTCTCTCTTTCTAATTATTTTTCTTATTCCGTTGGAAGCAAGTTTCTTAAAGCCTAATTTAACCCCTATCTGTCTGATTTTGTTCCCGTCTCCTTGTTTAAAGTTACAGCCCAGCCCAACGACCAAATAACTGTGCGCATACTGAATCGAAGGTTGATAATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGATGGTCTTGGCAAAGAAGGCATTGAATTTATTATGAACCTTCCAGACGTACCCATGAAGCTTCCGCCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATGTACTCTTCTTTTCCATTTCCCATATTTTGATTGTTTCATTATCTCGCTCTTTCTTATTCAAATTCTAAGAATTCTTTTCAATTCATGGAAGTACAAATTTTGTATTGTTTTATTGCTCGAGCTTAGTAGAAGCTCGAGGAAATATCCTTTTTAGCATGTTTGCTGTTGTTGAATGTTAAATATGAACCTATTAAATTACGTTTCATGCTTCTGGAGAGAAGTGAATTTAATGGAATCTGTGTACTTTACTTGATTTGTATTCATAGTACGTGTACTCGCTATTTTTTATATTTTAATTGGCTTACTTTATTTTTCTTCTCATGGTCCTTGTGGAAAACGTGGACTTCTGTAGACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGTGTTGATAACAGTCTACGTCTGGATTATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTCAAAGAGGATGATATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTAGGTAATCAAGCACAATGAATTAAAACTATAAACAGTTGATTATTTAGTGAGACTTTGCTGAGTTCTTGGTGTTTACTTCCTTGTCACTGACTCACTACTATTGGTGTTGTATTGTGTGTCCAATATATCAAAACACTTGAGATTTAGCCCAAGCTACAAGCTCTTGGTTTTCTTTGCTTCATCTGAAGCTTGTGCTTTGTAGGGAAGAGACATATGCTTTCTATGACAATGTATGAGTGTTTGGAGTCTTTGTGGCTTATGAATTGGTGATAAGAATTATGTTGGTTGTTGTCTATTGTTCCAAATTTGAAGTTTGTTCATGTATTCAAAGCTAATAAAATAGGGATATTGGTGATGATGGCTTGGGATGTTTAGAGTTTGTCTTGTCAGACATGGCCGAGGGTGCAAGCCCACACCTTGGTTAAAAAGAAAAATCATTTTGTGTTGCAATCGCTTATTATTCCATTTACCACTTTAGCTTATCGAAACACTATTGACATGACAAACATTAGGAATGAGACAACCCTGTTAACTTTAATGATGATGATATTGAGAATGCCTGTCAGAATCTTCATTTTAAGATGTGAAAATTGAAGGTTCTAATTTTCTCTTTAACATTAGAATTTAGAACTATCAATTTCAGTGGTTTACGTTTTAGGGTGAGATTGAGCAGATATGGCCCTCATCCTTTTGTTTCAGGTGCAAGTGGTGGTTTAAGAGGCCTTTGCAAAAACTTCTGGAAAGCTATCCCCTTTGTTTTCCTTTATTCTCTCACTTTATCACTTGCTCTGTTGGTGAAGGCTTGAAGTTTTATTTTTGGGAAGATCCCTAGTGGGGGAAGAACCTTTTTGTGCTTTGTTTTGGAGGCAATATTGCCTTTTGAATAAGAGGTTGCAGTATGTGGCCTTCAATAAACCCTTCTTCATCAATTCCTTTAGGGTTTCAGCGTCCTTACTATGATAGGGAGTCATTGAAGTTGGCTGATCTTTTCCCTTTTTTGAGGCCAGCATGTCATTCCAAGGAGAAGGGATTTTAGTATTTGGCCCTCCAATCCTTATAGGGGTTTCTTTTGCCATTCCTTTTCTTTTCGTATTTTGTCCTCACCTTCTCAACCTCTTGTTGCCTCTTTTTTTCTCTCTCTTCCTATGTTTTGTTCCCGCAACGGTGCACTCTCTATAAGAGGTATGAGTAGGGCCTGTTTCCTTTTTTTTTGGGATTGCTAGTTTACTCACTAGCCTTGGAGTTGTTGGTTGAGAGTGTTCGGTGTTTGTTTGGTTTGGAATAGAAATGGCACCCAGGTGGAAGAGGTGCTTTCATGCTCTCTTTTCAACGAGCAGGGCAAAGTTCTGTGGCATGTTAGCTTTTTTGTAGTTTTGTGGGGCATTTGGATTGAGATGAACAGTATAATTTTTACAGAGGTGGAGAGATAGGTGAGGAAGTTTGGCAGGTGGCTGGGTTCAATATTGTGGGCATCAGTCACTAGCCTTTTTGTAATTATGAGTCTAGTCTTGTTCTTTTCGATTGGAGTCCTTTTTTGAAGTTAAGGTCAATCTCCCATTTTTATTGTGGGGGCTTGTCTTTCTTGTGTGTCCTTTGTATATTCTTTCATTTCTCTCAATGAAACCACAATTTATTACCAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAGAAAAAAATGAGGTTGGAAATTGAAAAAAAAAAGTGAGGCTTTTATTTATTTACTTATATAATTTTATAAAATAATTATTATTATATCATAGAGTATTTTTTTAGTCTTTTAGAGCATTCCTTGTGGTTAGGGATGGTTAATAATGAATTGAAATATATGTTCTTTTGTTTGCATTTTCTCATTGATTTCTTTCTACGTTAACTATTCCCTGTGGGTTTGATCTGTATTTTTTTATGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCGAGGCTTTTTGAGTACTCAGGTATTTTGGTGTATATATATGTAAATTTAAGGTGCTTATGCATCCTGATGCTGAAAACTTCTAATGGTTGTTGTCAAATACTTTAGATTTGATTCTTATCCTTGAACTTTCGAGCATACTTAACTAATAATTTTGGTTTAAAATTAGATAAAGACACGCCAAATGAGAAGAATACAATTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACGTCTTACAGGTATTTTTCTTGTTTCTTTTGGAGTTCATGCCCTATTCATAACTTTTCTTAATTATCAACTTATTTGACAACAATTTTCTTTTATCATTACTGATGATGAATGTATAATTGGTGATTCAGTGATGTCAAAAGCATTGACGTGGTTGCCGAATGGCAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTACACTTCTTTTAGTTGCAGCCAAGACTCACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGTAACTGAACTCTAAATTTTATTTCTTATATGTTGAAAATGAAAGATAGGGAAGAAGTGGGTTTTTCTGGGCTTGGTTTTCTTGTAGGCCCTTGTATTATTTCATTTTTTTCTCAATTGAAGCCATTGTTTTTATTAAAAAGAAGAAAAAAAAAAAAAACTGAAAGATAGGGAAGAAGTGGTTTGCATGGGTAGATGACTGAAGCTGATGAGTTATGCTTAGAATAACATGTTTTGAATATGAAATTGTGATTTATGTGCTTGTCGTAAAATTATTACACATGAATAGATTCATTATTTTATTTTATAAGAACAAATTTTATTAATGTATGAAATTTACAAAAGAAGGCTGATCCTAAGCCAATGGAGTTACGAAAGATCTTTCTAATTGGTCAAAAGAGAAATGAGAGAATAAGATCTATAAAAAAGTAGTGCATATACACCAAGTCATAGCAAGGAAAATAATATGTTCAAAGAAGCTATCAAAAGTATTTTCCTTATCTTGAAAGAGGCGGTTGCGATCCCCCCCAAGTTTTCCCTGAGAAAGCCTGAATGAGACTCATCCAAAGGCTTCTTTTCCCCTCAGTGTAAGGGTGGTCACTGAGAGACTAGTTGAGAAGACAGTTGATGTCTCTTGAAAAAATAAGGTGCCAATTTGTTGCTGCGATCATTTCTTTCTAGAATCTATTGGCAAACTGACAACTGATAAATAAGTGATCTTGTGACTTATGGGGAGCTTTACAGATAATGCAGCAATGGGGGATAGGGACATGTATGGGGCACAATGCTGCATTCTATCATGGGTATTGGTGGCGATGACATTGTGGCTAAGCTCTCAAAGGAAGAATCTGACTTTCTTCGATTAATAATCAATCCAAATGGCTTCATGTTGAGTGTGAATGCTGCCCAATGTAGAAAAAGAGCCTTTTGTAGTCAACCTCCAAGCCCATTGGTCTCTTTGTGTGTCAAGTGGGCTTTATTCAGTGGGTTCGTGATGCTAAGCCATTCCTTCAATTTCTCATTAGAGAGAGTTTGCCTCGAAATCGAATAGGAATTGGACATATAATTTATAACTGGAGTTGATATCACTTCCAAAATAAGAAATTCTTTTTTTATAGATTTTTTTTATGCTATAGTTGATATAGTTGTTTCTTGGAGCAATGCTCCCCTCTCTTATATCGTTATAGCTATTCTTCTCTCCTCTCCAATAAGAGAGGCCTTTTGTAAATCTTCTGTTTGGAGGCTTCCCTCCCTTTTGTTCATACCATCAATGAAATTGTTTTTTATCTCGAAAGAGATATCACTTTGAATGTGGTGCTTGTGCGCTAAGGCTAATTGTTTCAGTTCATAATGGGATATTGTTGCTCAGTAGTTCCAGGTGTACGTTTCTTAATTTTTGCTTCAAATACTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTGAGTAATTATGTTACTGTGTTACTCAAAGATTCATTGATATTTTGAACTAATGAAATTTGTGATATTAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAGAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTTAGTTTCCTTCTTAAATTTGCTATTAATTATGTACGTACTTGGAACGTTATGATGATGATGATTTGGAGATGGGAAGGTTTCCTTGAAAAATAAAATTGTCATGTATATGACTAAGTTCCTACTTTGGTAGTCTTCTTTATATCCTTGATGGAGTAATAAGCCTCGTAACCTTTCAAATATGAAAGGCGTGTTACCATGTAAAAGAAAAAGAGGGGTAATCTCTACCCCTTACCTTTAGGCTGTTCTTTGGTTCTTTTGAAGAATAGACGTCTGTTTCTGATAAAAATTGTAATAGGAGAAGAGAGTTAAGATTTTGTCCTCTCCGGATGAATAAATGAAGAAGTAATTGTTGTTTCTGATACTCAAAAATCGGATTCCAAGTTGTTGCATGCTGTTGGCCTCTTTTTGCTGAATTCAAATTGCATTCATTTTTATCAATAATTTTTATTTTGTAGGTAGGAAAAGGGCAACGGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGGGATGCATGGGAGAAACGTGTCGCATTGCGTCGCGTGAAAGATCATTTCATTTGTAAGTAATGCTTGGTTCTACATTTTTTAAGATGCTTTAAGTGCCTTTTTTGGCCAAAACCCTGTACTAGTACGTTTTTTTCTTTTGTGTAATTTTTATGAGAACTCTACTAGTATTTCCTCGCATAGTACTTCTGCTTCAAGTGACTTTTAACTTCTATCTATAAAAAAACACCTACAAATTACTTTCAAACATAATAAGTCTAAGTAGGTATGTGTTTTTGTCAGGAAAAAAGTTCTTTTAGTTGTGCCAAACATGCTCCCAAATAAAAATAAACTTAGTTATCTTATTTTTGTTTTTGATTATTATTATTATCTTTTTTAGTCCAACAACAAGCTAGGGATTTGAATCTTTAACCTTTAAGTCAAAGATATAATGTCTTAACTAATTGAGTTGACATAGTAATGCTCAAGTTGACTCTTAGTTGTCTTTGTTAGAACTTAAAAGAACATATTTAACAATGTTTGAAGAAACTCATTTTTCATTGAGATTAGGTTTATATTTTCATTCATTTCCTCTGTGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCCCAGGTGCTCTTCACTGAAGCTGTAAAGATTTTGGAAGAT

mRNA sequence

CCAGTTCTATTTCCCATACCAGCGCTTAAACCCTCCCCTCCCGCTAAAACCTCCTCAGCCGTGCTCTTGAGTGCCGCCGCCGCCTTCTTTCTCGATTTTGCTTCTCCCCCGCGCAGCTCTTCCGACTTTTGGTCTCAGCCCAACGACCAAATAACTGTGCGCATACTGAATCGAAGGTTGATAATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGATGGTCTTGGCAAAGAAGGCATTGAATTTATTATGAACCTTCCAGACGTACCCATGAAGCTTCCGCCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGTGTTGATAACAGTCTACGTCTGGATTATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTCAAAGAGGATGATATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCGAGGCTTTTTGAGTACTCAGATAAAGACACGCCAAATGAGAAGAATACAATTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACGTCTTACAGTGATGTCAAAAGCATTGACGTGGTTGCCGAATGGCAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTACACTTCTTTTAGTTGCAGCCAAGACTCACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAGAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAGGAAAAGGGCAACGGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGGGATGCATGGGAGAAACGTGTCGCATTGCGTCGCGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCCCAGGTGCTCTTCACTGAAGCTGTAAAGATTTTGGAAGAT

Coding sequence (CDS)

CCAGTTCTATTTCCCATACCAGCGCTTAAACCCTCCCCTCCCGCTAAAACCTCCTCAGCCGTGCTCTTGAGTGCCGCCGCCGCCTTCTTTCTCGATTTTGCTTCTCCCCCGCGCAGCTCTTCCGACTTTTGGTCTCAGCCCAACGACCAAATAACTGTGCGCATACTGAATCGAAGGTTGATAATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGATGGTCTTGGCAAAGAAGGCATTGAATTTATTATGAACCTTCCAGACGTACCCATGAAGCTTCCGCCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGTGTTGATAACAGTCTACGTCTGGATTATTTTCGCAACAACTTTAAAATTGAAGTTATTGATCTCAAAGAGGATGATATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATCCTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCGAGGCTTTTTGAGTACTCAGATAAAGACACGCCAAATGAGAAGAATACAATTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACGTCTTACAGTGATGTCAAAAGCATTGACGTGGTTGCCGAATGGCAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTACACTTCTTTTAGTTGCAGCCAAGACTCACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCGGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAGAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAGGAAAAGGGCAACGGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGGGATGCATGGGAGAAACGTGTCGCATTGCGTCGCGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCCCAGGTGCTCTTCACTGAAGCTGTAAAGATTTTGGAAGAT

Protein sequence

PVLFPIPALKPSPPAKTSSAVLLSAAAAFFLDFASPPRSSSDFWSQPNDQITVRILNRRLIMSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKRLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILED

Homology

[Close]

BLAST of ClCG10G004370 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 728.8 bits (1880), Expect = 2.8e-206
Identity = 364/381 (95.54%), Postives = 375/381 (98.43%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSGKDKSLHNMS+SESEQ+G+ KEGIE+IMNLPDVPMKLPPHLELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGL+PIHVDPRLFEYSDKDTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
            CERGK RLTV SKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQD+LPEFSNNPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK+KCPVNVFDIEDIA G+KRATVARPRACTLCRECIRGD WEKRVALRRVKDHFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 380

[Close]

BLAST of ClCG10G004370 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 719.9 bits (1857), Expect = 1.3e-203
Identity = 365/438 (83.33%), Postives = 390/438 (89.04%), Query Frame = 0


Query: 5   PIPALKPSPPAKTSSAVLLSAAAAFFLDFASPPRSSSDFWSQPNDQITVRILNRRLIMSG 64
           P P     PP+ + S +LL  AA+FF+D                    +  L  R IMSG
Sbjct: 244 PQPCRSVPPPSSSFSILLLRRAASFFVDL-------------------LPSLGLRFIMSG 303

Query: 65  KDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTI 124
           KDK+LHNMSES+SEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHTDTI
Sbjct: 304 KDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTI 363

Query: 125 QYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVP 184
           QYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIAEVP
Sbjct: 364 QYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVP 423

Query: 185 TMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCE 244
           TMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH RCE
Sbjct: 424 TMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCE 483

Query: 245 RGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKD 304
           RGK RLT  SKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQD+LPEF+NNPIGPKD
Sbjct: 484 RGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGPKD 543

Query: 305 SDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK 364
            DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAEELK
Sbjct: 544 GDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEELK 603

Query: 365 EKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIEST 424
            KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKIEST
Sbjct: 604 NKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIEST 662

Query: 425 GALPPQVLFTEAVKILED 442
           GALPP+VLFTEAVKILED
Sbjct: 664 GALPPEVLFTEAVKILED 662

[Close]

BLAST of ClCG10G004370 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 709.5 bits (1830), Expect = 1.8e-200
Identity = 350/381 (91.86%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSGKDK+LHNMSES+SEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
           RCERGK RLT  SKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQD+LPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 708.8 bits (1828), Expect = 3.0e-200
Identity = 350/381 (91.86%), Postives = 368/381 (96.59%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSGKDK+LHNMSES+SE + +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
           RCERGK RLT  SKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQD+LPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. NCBI nr
Match: XP_023005438.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima])

HSP 1 Score: 706.8 bits (1823), Expect = 1.1e-199
Identity = 349/381 (91.60%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSG+DK+LH+MSES+SEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
           RCERGK RLT  S+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQD+LPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.1e-75
Identity = 160/352 (45.45%), Postives = 213/352 (60.51%), Query Frame = 0


Query: 104 LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFD 163
           +E  RTRV        +  T  + G ++  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 164 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 223
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 224 SDK--DTPNEKNTIVFRLHARCERGKRLT--------------VMSKALTWLPNGSEFPL 283
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186

Query: 284 VSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 343
                                     F    I P   DI++A+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 344 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVAR 403
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL       V ++++I  G+K A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVAN 306

Query: 404 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKIL 440
           PR  T  RE  R +  +K V L RV+DHFIF +ESTG LPP VL +EA+K+L
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVL 329

[Close]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.6e-74
Identity = 157/352 (44.60%), Postives = 213/352 (60.51%), Query Frame = 0


Query: 104 LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFD 163
           +E  R+RV        +  T  + G ++  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 164 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 223
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 224 SDK--DTPNEKNTIVFRLHARCERGKRLT--------------VMSKALTWLPNGSEFPL 283
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 284 VSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 343
                                     F    I P   DI++A+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 344 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVAR 403
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL       V +++++  G+K A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306

Query: 404 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKIL 440
           PR  T  RE  R +  +K V L RV+DH+IF +ESTG LPP VL +EA+K+L
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVL 329

[Close]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 276.9 bits (707), Expect = 3.8e-73
Identity = 160/352 (45.45%), Postives = 212/352 (60.23%), Query Frame = 0


Query: 104 LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFD 163
           +E  RTRV        +  T  + G +A  G D++   + F  NF+++V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 164 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 223
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 224 SD--KDTPNEKNTIVFRLHARCERGKRLT--------------VMSKALTWLPNGSEFPL 283
            +  ++   E +T+ FRL  RC R                   V ++ +TW+P G++   
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQ--- 186

Query: 284 VSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 343
                                D  PE     I P   DI++A+L PGQEI+L  H VKG+
Sbjct: 187 --------------------ADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGI 246

Query: 344 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVAR 403
           GK HAK+SPVATA YR+LP + LLE +E E AEEL +     V ++E++  G+K A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVAN 306

Query: 404 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKIL 440
            R  T  RE  R +  +K V L RV+DH+IF +ESTG LPP VL +EA+KIL
Sbjct: 307 ARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKIL 329

[Close]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.2e-71
Identity = 149/347 (42.94%), Postives = 211/347 (60.81%), Query Frame = 0


Query: 102 PHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIE 161
           P+LE +RT+V        +     YSGA+ S+G DNS  L+ F+ NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 162 FDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLF 221
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 222 EYSDKDTPNE----KNTIVFRLHARCER----GKRL--TVMSKALTWLPNGSEFPLVSDK 281
            +     PN+    ++T++F+L  +CE+    GK +  T +SK L W+P   +       
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ------- 192

Query: 282 SVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTH 341
                           ++  P   + P  P + DI + +L PGQ I+++ +  K +G+ H
Sbjct: 193 ----------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 342 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVARPRAC 401
            KWSPV TA YR+ P + + + I+ + A +L EKCP  VFDIED      +   ARP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLDC 312

Query: 402 TLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKI 439
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL  + +F EA+KI
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKI 328

[Close]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-63
Identity = 137/357 (38.38%), Postives = 208/357 (58.26%), Query Frame = 0


Query: 104 LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFD 163
           ++  RT +   +D      ++ + G +     DN   LD F+ N K+ +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 164 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 223
           + GID S+ANAFRRILIAE+PT+A E V + NNTSI+QDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 224 SDKDTPNEK------NTIVFRLHARCERG----------KRLTVMSKA----LTWLPNGS 283
                P ++      +T+VF L+ +CE            KRL V S+     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 284 EFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHA 343
           +                             F++NPI   + DI++A+L PGQEI+LEAHA
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 344 VKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRA 403
           + G+G+ HAK+SPVATA YR+LP + +L  IE E A + ++  P  V ++E+  DG+K+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 404 TVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILE 441
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P VLF +++ +L+
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLK 332

[Close]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 709.5 bits (1830), Expect = 8.6e-201
Identity = 350/381 (91.86%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSGKDK+LHNMSES+SEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
           RCERGK RLT  SKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQD+LPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 5.6e-200
Identity = 349/381 (91.60%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSG+DK+LH+MSES+SEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGA+AS+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIG 301
           RCERGK RLT  S+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQD+LPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 302 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 361
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 362 ELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 421
           ELK KCPVNVFDIEDIA+G+KRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 422 ESTGALPPQVLFTEAVKILED 442
           ESTGALPP+VLFTEAVKILED
Sbjct: 361 ESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 699.1 bits (1803), Expect = 1.2e-197
Identity = 352/382 (92.15%), Postives = 368/382 (96.34%), Query Frame = 0


Query: 62  MSGKDKSLHNMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 121
           MSGKDK+LHNMSESESEQ+G+ KEGIE+IMNLPDVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 122 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIA 181
           DTIQYSGAFASMG DNSLRLD FRNNFKIEVIDLKEDDIEFDMIGIDP+LANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 182 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 241
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PI VDPRLF+YSDKD PNE NTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 242 RCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSL-PEFSNNPI 301
            CERGK RLTV SKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ++L  EFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 302 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 361
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 362 EELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 421
           EEL++KCPVNVFDIEDIA G+KRATVARPR CTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 422 IESTGALPPQVLFTEAVKILED 442
           IESTGALPP+VLFTEAVKILED
Sbjct: 361 IESTGALPPEVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 9.2e-195
Identity = 348/382 (91.10%), Postives = 362/382 (94.76%), Query Frame = 0


Query: 62  MSGKDKSLH-NMSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIH 121
           MSGKDK+LH  M+ESESEQ+ +GKEGIE+IMNLPDVPMKLPPH+ELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 122 TDTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILI 181
           TDTIQYSGAFASMG DNSLRLD FRNNFKIEVI+LK DDIEFDMIGIDP+LANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 182 AEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLH 241
           AEVPTMAIEKVL ANNTSIVQDEVLAHRLGLIPI VDPRLF+YSDKD PNE NTIVFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 242 ARCERGK-RLTVMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPI 301
           ARCERGK RLTV S+ALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQD LPEFS N I
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKLPEFSKNSI 240

Query: 302 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 361
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDELA 300

Query: 362 EELKEKCPVNVFDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 421
           EELK KCPVNVFDIEDIA G+KRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELKRKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 422 IESTGALPPQVLFTEAVKILED 442
           IESTGALPP VLFTEAVKILED
Sbjct: 361 IESTGALPPNVLFTEAVKILED 381

[Close]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 4.6e-194
Identity = 341/371 (91.91%), Postives = 360/371 (97.04%), Query Frame = 0


Query: 72  MSESESEQDGLGKEGIEFIMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFA 131
           MS+SESEQ   GKEGIE+IMNLPDVPMKLPPHLE+QRTRVECKADAPIHTDTIQYSGA+A
Sbjct: 1   MSDSESEQVA-GKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 132 SMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKV 191
           SMGVDNSLRLDYFRNNFKIEVIDL EDDIEFDMIGIDP+LANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 192 LVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGK-RLT 251
           LVANNTS++QDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGK RLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 252 VMSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILAR 311
           V SK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQD+LPEFSNN IGPKD+DII+AR
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIAR 240

Query: 312 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNV 371
           LGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK+KCPV+V
Sbjct: 241 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDV 300

Query: 372 FDIEDIADGRKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQV 431
           FDIEDIA+G+KRA VARPR+CTLCRECIRG+AWEKRV+LRRVKDHFIFKIESTGALPP+V
Sbjct: 301 FDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 360

Query: 432 LFTEAVKILED 442
           LFTEAVKILED
Sbjct: 361 LFTEAVKILED 370

[Close]

BLAST of ClCG10G004370 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 485.3 bits (1248), Expect = 5.1e-137
Identity = 245/355 (69.01%), Postives = 287/355 (80.85%), Query Frame = 0


Query: 90  IMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFK 149
           I +LPDVP  LPPHLELQRTRV CK D+ IH   I +SGA++SMGVDNS+RL+ F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 150 IEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRL 209
           ++VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS++QDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 210 GLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERG-KRLTVMSKALTWLPNGSEFPL 269
           GLIPI  DPRLFEY S+ D PNEKNTIVF+LH +C +G  R  V++  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 270 VSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 329
           + +   S + PKTYTSF+ SQDS PEF+ NPI P   DI++A+LGPGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 330 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVAR 389
           GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL + CP  VFDIED+  GRKRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 390 PRACTLCRECIR-GDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILED 442
           PR C+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PP+VLF EAVKILED
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILED 375

[Close]

BLAST of ClCG10G004370 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 459.5 bits (1181), Expect = 3.0e-129
Identity = 234/354 (66.10%), Postives = 280/354 (79.10%), Query Frame = 0


Query: 90  IMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 149
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 150 KIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 209
           K++V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 210 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGK-RLTVMSKALTWLPNGSEFP 269
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + + RL V++  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 270 LVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 329
           L+ +     SKPKTYTSFSCSQDSLPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 330 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVA 389
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  G+KRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 390 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILE 441
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILE 366

[Close]

BLAST of ClCG10G004370 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 459.5 bits (1181), Expect = 3.0e-129
Identity = 234/354 (66.10%), Postives = 280/354 (79.10%), Query Frame = 0


Query: 90  IMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 149
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 150 KIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 209
           K++V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 210 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGK-RLTVMSKALTWLPNGSEFP 269
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + + RL V++  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 270 LVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 329
           L+ +     SKPKTYTSFSCSQDSLPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 330 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKEKCPVNVFDIEDIADGRKRATVA 389
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  G+KRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 390 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILE 441
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILE 366

[Close]

BLAST of ClCG10G004370 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 336.3 bits (861), Expect = 3.8e-92
Identity = 171/262 (65.27%), Postives = 208/262 (79.39%), Query Frame = 0


Query: 90  IMNLPDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 149
           I +LPDVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 150 KIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 209
           K++V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 210 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGK-RLTVMSKALTWLPNGSEFP 269
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C + + RL V++  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 270 LVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 329
           L+ +     SKPKTYTSFSCSQDSLPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 330 MGKTHAKWSPVATAWYRMLPEV 349
           +GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of ClCG10G004370 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-34
Identity = 103/306 (33.66%), Postives = 163/306 (53.27%), Query Frame = 0


Query: 149 KIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 208
           KI++ +LK+D  +F++   D S+ANA RR++I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 209 LGLIPIHVD-------PRLFEYSDKDTPNEKNTIVFRLHARCERGKRLTVMSKALTWLPN 268
           LGLIP+  +        R  +  D D   E  ++ FRL ++C   + L V S+ L     
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDL----- 130

Query: 269 GSEFPLVSDKSVSNSKPKTYTSFSCSQDSLPEFSNNPIGPKDSDIILARLGPGQEIELEA 328
                  +D +V+   P  +T  S   DS           +   II+ +L  GQE++L A
Sbjct: 131 -----YSADPTVT---PVDFTIDSSVSDS----------SEHKGIIIVKLRRGQELKLRA 190

Query: 329 HAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK----EKCPVNVFDIEDIA 388
            A KG+GK HAKWSP AT  +   P++++ E++ D L++E K    E  P  VF ++ + 
Sbjct: 191 IARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVT 250

Query: 389 DGRKRATVARPRACTLCRECI-RGDAWEK--RVALRRVKDHFIFKIESTGALPPQVLFTE 441
              ++  V  P A T   E I + +A  K   + +    D FIF +ESTGA+    L   
Sbjct: 251 ---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLN 290

The following BLAST results are available for this feature:

BLAST of ClCG10G004370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903474.1	2.8e-206	95.54	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
KAG6596753.1	1.3e-203	83.33	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]
XP_022936430.1	1.8e-200	91.86	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	3.0e-200	91.86	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]
XP_023005438.1	1.1e-199	91.60	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima]	[more]

BLAST of ClCG10G004370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	3.1e-75	45.45	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	1.6e-74	44.60	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	3.8e-73	45.45	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	1.2e-71	42.94	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	1.2e-63	38.38	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of ClCG10G004370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDA3	8.6e-201	91.86	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	5.6e-200	91.60	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L637	1.2e-197	92.15	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A1S4DX61	9.2e-195	91.10	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DXI7	4.6e-194	91.91	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]

BLAST of ClCG10G004370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	5.1e-137	69.01	RNA polymerase I subunit 43	[more]
AT1G60850.2	3.0e-129	66.10	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	3.0e-129	66.10	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	3.8e-92	65.27	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	2.8e-34	33.66	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 159..441 e-value: 3.6E-99 score: 345.4
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 161..441 e-value: 3.2E-24 score: 85.6
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 185..332 e-value: 5.1E-105 score: 352.8
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 184..336
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 150..440 e-value: 5.1E-105 score: 352.8
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 146..441
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 192..335 e-value: 1.4E-22 score: 80.2
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 84..441
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 84..441
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 173..213
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 148..439 e-value: 1.34964E-138 score: 396.965

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004370.1	ClCG10G004370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity