ClCG10G004250 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G004250
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 5442385 .. 5442711 (-)
RNA-Seq Expression	ClCG10G004250
Synteny	ClCG10G004250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGGTACACGAAGGGGGACTATGAGAAAATGGAGGAAGGTAAGTTGGATTTGCTTCTCAAACAATATGGACTCTGTTTTGATGGTACCCTTGAGGAGAAAAGGGCATTTGCTATTGGGACCTTCTTGTGGCCTGACCAACTTTGA

mRNA sequence

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGGTACACGAAGGGGGACTATGAGAAAATGGAGGAAGGTAAGTTGGATTTGCTTCTCAAACAATATGGACTCTGTTTTGATGGTACCCTTGAGGAGAAAAGGGCATTTGCTATTGGGACCTTCTTGTGGCCTGACCAACTTTGA

Coding sequence (CDS)

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGGTACACGAAGGGGGACTATGAGAAAATGGAGGAAGGTAAGTTGGATTTGCTTCTCAAACAATATGGACTCTGTTTTGATGGTACCCTTGAGGAGAAAAGGGCATTTGCTATTGGGACCTTCTTGTGGCCTGACCAACTTTGA

Protein sequence

MGLKWILNSAFTQVLGLTEKQHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL

Homology

[Close]

BLAST of ClCG10G004250 vs. NCBI nr
Match: XP_038904207.1 (uncharacterized protein LOC120090553 [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-50
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLT+K QHNQKE  EGI+NVEQVKEA+DCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTDKQQHNQKEAGEGIENVEQVKEAQDCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYEKMEEGKLDLLLKQYGLCFDGTLEEKRAF IGTFLWPDQL
Sbjct: 61  YPRYTKEDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFTIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. NCBI nr
Match: XP_022965232.1 (uncharacterized protein LOC111465146 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEKQH-NQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEKQH NQ E  EGIKNVEQVKEAEDCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYEKMEEGKLDLLLKQYGL F+GTLEEKRAFAIGTFLWPDQL
Sbjct: 61  YPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. NCBI nr
Match: XP_022932392.1 (uncharacterized protein LOC111438758 [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEK QHNQ E  EG KNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGTKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYEKME+GKLDLLLKQYGL F+GTLEEKRAFAIGTFLWPDQL
Sbjct: 61  YPRYTKADYEKMEDGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. NCBI nr
Match: XP_023553399.1 (uncharacterized protein LOC111810825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEK QHN+ E  EGIKNVEQVKE+E+CFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQHNRNEAREGIKNVEQVKESENCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYE+MEEGKLDLLLKQYGL F+GTLEEKRAFAIGTFLWPDQL
Sbjct: 61  YPRYTKADYERMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. NCBI nr
Match: XP_008449025.1 (PREDICTED: uncharacterized protein LOC103491021 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-46
Identity = 99/111 (89.19%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
           MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNFESGFQMP
Sbjct: 1   MGLKWILNSAFTQVLGLTEKLQQNQKEAGGEGIKNVEQVKEGRDCFYGGGLNFESGFQMP 60

Query: 61  LHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           LHYPRYTK DYE+MEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL
Sbjct: 61  LHYPRYTKRDYEEMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 111

[Close]

BLAST of ClCG10G004250 vs. ExPASy TrEMBL
Match: A0A6J1HJS9 (uncharacterized protein LOC111465146 OS=Cucurbita maxima OX=3661 GN=LOC111465146 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.8e-50
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEKQH-NQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEKQH NQ E  EGIKNVEQVKEAEDCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYEKMEEGKLDLLLKQYGL F+GTLEEKRAFAIGTFLWPDQL
Sbjct: 61  YPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. ExPASy TrEMBL
Match: A0A6J1EWJ7 (uncharacterized protein LOC111438758 OS=Cucurbita moschata OX=3662 GN=LOC111438758 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEK QHNQ E  EG KNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGTKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61  YPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           YPRYTK DYEKME+GKLDLLLKQYGL F+GTLEEKRAFAIGTFLWPDQL
Sbjct: 61  YPRYTKADYEKMEDGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 109

[Close]

BLAST of ClCG10G004250 vs. ExPASy TrEMBL
Match: A0A5D3CPN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00090 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.0e-47
Identity = 99/111 (89.19%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
           MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNFESGFQMP
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQQNQKEAGGEGIKNVEQVKEGRDCFYGGGLNFESGFQMP 60

Query: 61  LHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           LHYPRYTK DYE+MEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL
Sbjct: 61  LHYPRYTKRDYEEMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 111

[Close]

BLAST of ClCG10G004250 vs. ExPASy TrEMBL
Match: A0A1S3BM13 (uncharacterized protein LOC103491021 OS=Cucumis melo OX=3656 GN=LOC103491021 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.0e-47
Identity = 99/111 (89.19%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
           MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNFESGFQMP
Sbjct: 1   MGLKWILNSAFTQVLGLTEKLQQNQKEAGGEGIKNVEQVKEGRDCFYGGGLNFESGFQMP 60

Query: 61  LHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           LHYPRYTK DYE+MEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL
Sbjct: 61  LHYPRYTKRDYEEMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 111

[Close]

BLAST of ClCG10G004250 vs. ExPASy TrEMBL
Match: A0A0A0L4U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047750 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 97/111 (87.39%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
           MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNF+SGFQMP
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQQNQKEAGGEGIKNVEQVKEGRDCFYGGDLNFQSGFQMP 60

Query: 61  LHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           LHYPRYTK DYE+MEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTF+WPDQL
Sbjct: 61  LHYPRYTKRDYEEMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFIWPDQL 111

[Close]

BLAST of ClCG10G004250 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-23
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEKQHNQKEVAEGIKN--VEQVKEAEDCFYRSLNFESGFQMPL 60
           M +K +  SAFTQ+ G +    +Q    +  +N  ++ +K+ E        F SGFQ+PL
Sbjct: 1   MEMKLLFTSAFTQMFGYSNHM-DQASNCQSTRNKIIKMMKKEE--------FPSGFQVPL 60

Query: 61  HYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQL 109
           HYP+Y+K DYE M++ +LDLLLKQYG  F+G+LE+KR FAI +FLWPDQL
Sbjct: 61  HYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of ClCG10G004250 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-18
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 52  SGFQMPLHYPRYTKGDYEKMEEGKLDLLLKQYGLC--FDGTLEEKRAFAIGTFLWP 106
           SGF+MPLHYPRYTK DYE+MEE +LDLLL +YGL    D TL EKRAFAI TF+WP
Sbjct: 34  SGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of ClCG10G004250 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 49  NFESGFQMPLHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLWPDQ 108
           N  S FQ+PLHYP+YTK DYEKM E +LD LL++YGL   G   EKR FAIG FLW  +
Sbjct: 40  NQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of ClCG10G004250 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-13
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 52  SGFQMPLHYPRYTKGDYEKMEEGKLDLLLKQYGLCFDGTLEEKRAFAIGTFLW 105
           S F+MPLHYPRY+K DY+ M E KLD +L  YGL   G L  KR FAIG FLW
Sbjct: 30  SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of ClCG10G004250 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 52  SGFQMPLHYPRYTKGDYEKMEEGKLDLLLKQYGLCFD-GTLEEKRAFAIGTFLW 105
           S FQMPL YP Y K  Y+ M E +LD LLK YGL  D G L  K+ FA+G FLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:

BLAST of ClCG10G004250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904207.1	3.1e-50	90.83	uncharacterized protein LOC120090553 [Benincasa hispida]	[more]
XP_022965232.1	1.2e-49	91.74	uncharacterized protein LOC111465146 [Cucurbita maxima]	[more]
XP_022932392.1	2.2e-48	88.99	uncharacterized protein LOC111438758 [Cucurbita moschata]	[more]
XP_023553399.1	8.5e-48	88.07	uncharacterized protein LOC111810825 [Cucurbita pepo subsp. pepo]	[more]
XP_008449025.1	1.2e-46	89.19	PREDICTED: uncharacterized protein LOC103491021 [Cucumis melo]	[more]

BLAST of ClCG10G004250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G004250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJS9	5.8e-50	91.74	uncharacterized protein LOC111465146 OS=Cucurbita maxima OX=3661 GN=LOC111465146...	[more]
A0A6J1EWJ7	1.1e-48	88.99	uncharacterized protein LOC111438758 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A5D3CPN0	6.0e-47	89.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BM13	6.0e-47	89.19	uncharacterized protein LOC103491021 OS=Cucumis melo OX=3656 GN=LOC103491021 PE=...	[more]
A0A0A0L4U1	2.3e-46	87.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047750 PE=4 SV=1	[more]

BLAST of ClCG10G004250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55620.1	5.9e-23	48.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G09950.1	3.4e-18	73.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41761.1	1.6e-15	61.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G55570.1	5.6e-13	62.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11405.1	1.5e-10	57.41	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	OS06G0523300 PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004250.1	ClCG10G004250.1	mRNA