ClCG10G002250 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G002250
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem II CP47 reaction center protein
Location	CG_Chr10: 2508818 .. 2509255 (+)
RNA-Seq Expression	ClCG10G002250
Synteny	ClCG10G002250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCATACTTGCCCGACTGCCATCATACTATGATCATAGTATGAATAGTTTTTTGAAATTGTCAATATAAATATAATGGACTAATATGATGCAATTCTGTAGCATATTTCTATGCGAGTCTTAGCAAAATAGGATTAAGTTATTTCAGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

ATGGGGGCATACTTGCCCGACTGCCATCATACTATGATCATATTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Coding sequence (CDS)

ATGGGGGCATACTTGCCCGACTGCCATCATACTATGATCATATTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Protein sequence

MGAYLPDCHHTMIILLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

Homology

[Close]

BLAST of ClCG10G002250 vs. NCBI nr
Match: OMP12453.1 (Photosystem antenna protein-like protein [Corchorus olitorius])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 15  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Sbjct: 130 LVYFWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRR 185

[Close]

BLAST of ClCG10G002250 vs. NCBI nr
Match: ALO21850.1 (PsbB [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. NCBI nr
Match: YP_009752607.1 (photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem II 47 kDa protein [Trichosanthes kirilowii] >QJD26496.1 PsbB [Trichosanthes kirilowii var. japonica] >QJD26670.1 PsbB [Trichosanthes rosthornii] >QIT05003.1 photosystem II 47 kDa protein [Trichosanthes homophylla] >QJD26321.1 PsbB [Trichosanthes kirilowii])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. NCBI nr
Match: YP_009751764.1 (photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QJR52983.1 photosystem II CP47 chlorophyll apoprotein [Herpetospermum pedunculosum])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. NCBI nr
Match: ADM63359.1 (photosystem II cp47 protein, partial [Scaevola auriculata])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 445 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 496

[Close]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot
Match: A4QK44 (Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot
Match: P56777 (Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=psbB PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot
Match: Q7FNS4 (Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL
Match: A0A1R3KZB8 (Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_03185 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 15  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Sbjct: 130 LVYFWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRR 185

[Close]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL
Match: A0A6H0ERV3 (Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL
Match: G3ETS3 (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=412675 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL
Match: A0A1S4EU40 (Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL
Match: A0A249RZY7 (Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis OX=3658 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of ClCG10G002250 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

The following BLAST results are available for this feature:

BLAST of ClCG10G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP12453.1	1.4e-22	92.86	Photosystem antenna protein-like protein [Corchorus olitorius]	[more]
ALO21850.1	1.5e-21	100.00	PsbB [Cucurbita argyrosperma subsp. sororia]	[more]
YP_009752607.1	1.5e-21	100.00	photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem...	[more]
YP_009751764.1	1.5e-21	100.00	photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosys...	[more]
ADM63359.1	1.5e-21	100.00	photosystem II cp47 protein, partial [Scaevola auriculata]	[more]

BLAST of ClCG10G002250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJE1	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJM5	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]
A4QK44	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB P...	[more]
P56777	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=p...	[more]
Q7FNS4	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psb...	[more]

BLAST of ClCG10G002250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3KZB8	6.7e-23	92.86	Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO...	[more]
A0A6H0ERV3	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
G3ETS3	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=41267...	[more]
A0A1S4EU40	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3...	[more]
A0A249RZY7	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis O...	[more]

BLAST of ClCG10G002250 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	4.2e-25	100.00	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 18..65 e-value: 2.6E-19 score: 69.3
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 18..70
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 18..70
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G002250.1	ClCG10G002250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity