ClCG10G001600 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS Homology
BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_038905810.1 (uncharacterized protein LOC120091761 [Benincasa hispida]) HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49 Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0
BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_008448684.1 (PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo] >KAA0053043.1 uncharacterized protein E6C27_scaffold344G001590 [Cucumis melo var. makuwa] >TYK11498.1 uncharacterized protein E5676_scaffold139G001620 [Cucumis melo var. makuwa]) HSP 1 Score: 181.8 bits (460), Expect = 3.2e-42 Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_031737872.1 (uncharacterized protein LOC116402546 [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40 Identity = 86/119 (72.27%), Postives = 99/119 (83.19%), Query Frame = 0
BLAST of ClCG10G001600 vs. NCBI nr
Match: KAE8650028.1 (hypothetical protein Csa_011525 [Cucumis sativus]) HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36 Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27 Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42 Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42 Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0
BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41 Identity = 86/115 (74.78%), Postives = 99/115 (86.09%), Query Frame = 0
BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27 Identity = 74/119 (62.18%), Postives = 85/119 (71.43%), Query Frame = 0
BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 7.8e-26 Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 0
BLAST of ClCG10G001600 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
BLAST of ClCG10G001600 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 5.0e-09 Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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