ClCG09G022780 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G022780
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDefensin-like protein 3
LocationCG_Chr09: 39797193 .. 39797520 (+)
RNA-Seq ExpressionClCG09G022780
SyntenyClCG09G022780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGTACTAGATCTCATCCGATGCGATCCTCCTGGTTGTTTAATTTTGTGGTTTAATATCTTTATTATAATAATGAAAATAGAGAGTAATAGAAGTTGTGTTGTGTTGTTGCTTACAGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

mRNA sequence

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Coding sequence (CDS)

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Protein sequence

MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSCICTVPC
Homology
BLAST of ClCG09G022780 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

BLAST of ClCG09G022780 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 5  EEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSC 64
          E WRKLT+VLFI LSLASGWMVAETEGR CYRPSP  KG CSS++DCI VCDGFC+HG C
Sbjct: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63

Query: 65 ICTVPC 71
          +C VPC
Sbjct: 64 MCEVPC 69

BLAST of ClCG09G022780 vs. NCBI nr
Match: KAA0062795.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 3  GSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHG 62
          G E  RKLT+VL I LS+ASGWMVAETEGR C+RP P+ KG CSSDEDCI VCDGFC+ G
Sbjct: 2  GEEGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLG 61

Query: 63 SCICTVPC 71
           C+C VPC
Sbjct: 62 KCMCAVPC 69

BLAST of ClCG09G022780 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-19
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG E WRKLT+VLFIFL+LASGWMV ETEG+ C++ SPSF+G+C+S+ +C+G CD    
Sbjct: 1  MAG-EGWRKLTVVLFIFLALASGWMVVETEGKTCFKQSPSFRGQCTSNNECVGACDNDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G+C++G CIC V C
Sbjct: 61 YNGYCSNGLCICAVHC 75

BLAST of ClCG09G022780 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G C++G CICTV C
Sbjct: 61 YNGVCSNGLCICTVIC 74

BLAST of ClCG09G022780 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.6e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

BLAST of ClCG09G022780 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 3  GSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHG 62
          G E  RKLT+VL I LS+ASGWMVAETEGR C+RP P+ KG CSSDEDCI VCDGFC+ G
Sbjct: 2  GEEGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLG 61

Query: 63 SCICTVPC 71
           C+C VPC
Sbjct: 62 KCMCAVPC 69

BLAST of ClCG09G022780 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G C++G CICTV C
Sbjct: 61 YNGVCSNGLCICTVIC 74

BLAST of ClCG09G022780 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1  MAGSEEWRKLTIVLFIF-LSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG   W+KLT V FIF L++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAGG--WKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

BLAST of ClCG09G022780 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0

Query: 3  GSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC------- 62
          G E  RKLT+V+ IFL  ASGWMV +TEG  CY+PS +F+G C+S E+C  VC       
Sbjct: 2  GGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWD 61

Query: 63 DGFCNHGSCICTVPC 71
          DGFC+   CICT  C
Sbjct: 62 DGFCSGDKCICTEKC 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AHA50469.11.6e-34100.00defensin-like protein 3 [Citrullus lanatus][more]
XP_031744629.12.5e-2478.79defensin-1-like [Cucumis sativus][more]
KAA0062795.13.4e-2172.06defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like pro... [more]
XP_038887289.15.4e-1960.53defensin-like protein 2 [Benincasa hispida][more]
KAA0062794.12.5e-1655.26defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W5RQN17.6e-35100.00Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BEY41.6e-2172.06Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCI91.2e-1655.26Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4479.6e-1453.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
A0A5A7V3H51.6e-1353.33Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 26..70
e-value: 9.2E-7
score: 30.6
IPR008176Defensin, plantPROSITEPS00940GAMMA_THIONINcoord: 32..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G022780.1ClCG09G022780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response